Wall clock time and date at job start Tue Mar 31 2020 00:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.84739 * 336.20171 * 10 9 7 12 12 C 1.53782 * 113.61341 * 107.50054 * 10 9 7 13 13 C 1.53779 * 87.07959 * 139.98387 * 12 10 9 14 14 H 1.08997 * 113.69318 * 89.12839 * 13 12 10 15 15 C 1.52998 * 113.61668 * 220.02121 * 13 12 10 16 16 N 1.46497 * 109.47283 * 272.49720 * 15 13 12 17 17 C 1.34777 * 120.00227 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99767 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00355 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.64139 * 300.00343 * 19 17 16 21 21 C 1.53029 * 109.64056 * 60.41824 * 19 17 16 22 22 C 1.50068 * 110.14423 * 169.12415 * 21 19 17 23 23 C 1.29445 * 124.07858 * 342.86604 * 22 21 19 24 24 C 1.50066 * 124.07171 * 0.45458 * 23 22 21 25 25 C 1.52946 * 110.30323 * 343.04505 * 24 23 22 26 26 C 1.53778 * 113.61744 * 205.00147 * 10 9 7 27 27 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 29 29 H 1.08995 * 113.62216 * 254.53487 * 12 10 9 30 30 H 1.09004 * 113.61009 * 25.43814 * 12 10 9 31 31 H 1.09004 * 109.47333 * 32.50112 * 15 13 12 32 32 H 1.09006 * 109.47270 * 152.49719 * 15 13 12 33 33 H 0.96997 * 120.00223 * 0.02562 * 16 15 13 34 34 H 1.08999 * 109.36000 * 289.32992 * 21 19 17 35 35 H 1.08997 * 109.35724 * 49.05583 * 21 19 17 36 36 H 1.07998 * 117.95987 * 162.84801 * 22 21 19 37 37 H 1.07994 * 117.96358 * 180.46961 * 23 22 21 38 38 H 1.08994 * 109.36326 * 103.09672 * 24 23 22 39 39 H 1.09008 * 109.35343 * 222.81599 * 24 23 22 40 40 H 1.08998 * 109.44433 * 289.48808 * 25 24 23 41 41 H 1.09003 * 109.80191 * 168.88484 * 25 24 23 42 42 H 1.09001 * 113.61099 * 334.56839 * 26 10 9 43 43 H 1.09002 * 113.61449 * 105.46880 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 3.0655 -3.5639 -0.4046 12 6 2.0003 -4.4015 1.3458 13 6 1.8486 -5.6973 0.5317 14 1 2.7982 -6.1644 0.2710 15 6 0.8460 -6.6846 1.1324 16 7 1.5278 -7.5422 2.1049 17 6 0.8381 -8.4937 2.7647 18 8 -0.3471 -8.6403 2.5529 19 6 1.5394 -9.3755 3.7655 20 1 2.3385 -9.9276 3.2708 21 6 2.1263 -8.5151 4.8867 22 6 2.5924 -9.3861 6.0164 23 6 2.2303 -10.6181 6.1795 24 6 1.3015 -11.3506 5.2560 25 6 0.5352 -10.3598 4.3784 26 6 1.2599 -4.8290 -0.5928 27 1 -0.4849 -0.8401 0.0004 28 1 0.3557 -2.3881 0.0016 29 1 2.9287 -4.3492 1.9144 30 1 1.1223 -4.1560 1.9435 31 1 0.0476 -6.1342 1.6301 32 1 0.4226 -7.3005 0.3388 33 1 2.4756 -7.4247 2.2746 34 1 2.9698 -7.9434 4.4996 35 1 1.3627 -7.8292 5.2533 36 1 3.2725 -8.9584 6.7382 37 1 2.6208 -11.1519 7.0332 38 1 1.8792 -12.0202 4.6189 39 1 0.5929 -11.9338 5.8443 40 1 -0.1851 -9.8157 4.9892 41 1 0.0157 -10.8955 3.5838 42 1 0.1796 -4.7004 -0.5250 43 1 1.5907 -5.1218 -1.5892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086026734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:31 Heat of formation + Delta-G solvation = -11.191103 kcal Electronic energy + Delta-G solvation = -21101.703052 eV Core-core repulsion = 17954.006611 eV Total energy + Delta-G solvation = -3147.696441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.36523 -38.80056 -37.73201 -34.81944 -33.61379 -31.70326 -31.11042 -29.99826 -27.28361 -25.18985 -24.23220 -23.62222 -22.90814 -21.22094 -20.42569 -19.09639 -18.24695 -17.55593 -17.19562 -16.24714 -15.89556 -15.28077 -14.95236 -14.81547 -14.18800 -14.02613 -13.82346 -13.56896 -13.47423 -13.35328 -13.12993 -12.54377 -12.49029 -11.99545 -11.92542 -11.56329 -11.30041 -11.09727 -10.97148 -10.75058 -10.67919 -10.36574 -10.30006 -10.05312 -9.91409 -9.70793 -9.34045 -9.14738 -9.05006 -8.88103 -7.04766 -6.12721 -3.12645 1.94987 2.55710 3.11389 3.50361 3.57148 3.66377 4.28058 4.34425 4.52829 4.65164 4.83316 4.87625 4.90139 4.96581 4.98527 5.09892 5.15419 5.20808 5.31812 5.42135 5.47257 5.52681 5.60137 5.62109 5.75786 5.78099 5.85797 5.89225 5.92028 6.00377 6.18783 6.21055 6.25871 6.30266 6.40430 6.50498 6.59654 6.71907 7.01238 7.43534 7.79904 8.15630 8.73384 9.20448 10.06787 10.21908 11.35656 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.002771 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.714963 B =10103.893856 C =10530.748978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.086 2.914 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.336 4.336 8 H 0.066 0.934 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.076 0.924 12 C -0.160 4.160 13 C -0.126 4.126 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.725 5.725 17 C 0.514 3.486 18 O -0.542 6.542 19 C -0.107 4.107 20 H 0.098 0.902 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.093 4.093 25 C -0.100 4.100 26 C -0.144 4.144 27 H 0.256 0.744 28 H 0.368 0.632 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -22.650 9.124 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.243 4.243 3 Si 0.917 3.083 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.467 4.467 8 H 0.084 0.916 9 N -0.364 5.364 10 C 0.059 3.941 11 H 0.094 0.906 12 C -0.201 4.201 13 C -0.145 4.145 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.376 5.376 17 C 0.300 3.700 18 O -0.419 6.419 19 C -0.128 4.128 20 H 0.116 0.884 21 C -0.120 4.120 22 C -0.171 4.171 23 C -0.175 4.175 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.184 4.184 27 H 0.067 0.933 28 H 0.202 0.798 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.036 -21.012 8.940 23.620 hybrid contribution 0.468 -1.645 0.203 1.723 sum 6.505 -22.658 9.143 25.284 Atomic orbital electron populations 1.70818 1.06081 1.28549 1.53458 1.25805 0.97065 1.01120 1.00339 0.83148 0.73526 0.75014 0.76641 1.22110 1.21981 1.21985 1.20159 0.92092 0.85880 1.48527 0.91609 1.42432 1.04786 1.00912 1.88277 1.21461 0.95285 0.84527 0.92800 0.90554 1.23930 1.01330 0.94972 0.99900 1.22627 0.98452 0.94406 0.99044 0.89307 1.21423 0.95241 0.91601 0.90917 1.46086 1.13260 1.35449 1.42784 1.20620 0.87394 0.80669 0.81346 1.90703 1.15548 1.69994 1.65659 1.21402 0.99425 0.96808 0.95210 0.88438 1.20429 1.00809 0.97280 0.93491 1.21997 1.00689 0.95592 0.98851 1.22086 0.99316 0.96213 0.99840 1.20487 0.97552 0.97803 0.97127 1.21410 0.96813 0.96338 0.99219 1.23462 1.00873 0.97172 0.96885 0.93272 0.79828 0.92674 0.90518 0.91354 0.91802 0.76626 0.90334 0.90154 0.87537 0.87866 0.90812 0.90676 0.91097 0.90612 0.90297 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.37 13.70 55.49 0.76 -28.61 16 2 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 3 Si 1.09 26.03 29.92 -169.99 -5.09 20.94 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.34 -9.42 9.97 -15.06 -0.15 -9.57 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -18.12 5.40 -52.63 -0.28 -18.40 16 10 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 11 H 0.08 1.49 8.10 -51.92 -0.42 1.07 16 12 C -0.16 -2.64 7.43 -25.92 -0.19 -2.83 16 13 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 14 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.72 5.51 -4.04 -0.02 1.69 16 16 N -0.72 -7.99 5.47 -60.29 -0.33 -8.32 16 17 C 0.51 6.29 7.13 -10.99 -0.08 6.21 16 18 O -0.54 -8.89 15.90 5.55 0.09 -8.80 16 19 C -0.11 -0.96 2.57 -91.56 -0.24 -1.19 16 20 H 0.10 0.73 8.13 -51.93 -0.42 0.30 16 21 C -0.08 -0.67 5.28 -28.17 -0.15 -0.82 16 22 C -0.15 -1.14 9.80 -35.90 -0.35 -1.50 16 23 C -0.16 -1.12 9.81 -35.90 -0.35 -1.47 16 24 C -0.09 -0.65 6.11 -28.22 -0.17 -0.82 16 25 C -0.10 -0.91 4.70 -26.56 -0.12 -1.04 16 26 C -0.14 -2.29 7.39 -25.92 -0.19 -2.48 16 27 H 0.26 7.84 6.77 -40.82 -0.28 7.57 16 28 H 0.37 9.54 6.75 -40.82 -0.28 9.26 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 31 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.40 8.17 -40.82 -0.33 3.07 16 34 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 41 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 42 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -33.16 347.73 -9.58 -42.74 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.22 Total: 9.42 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.75 Total: -14.21 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.15 Total: -55.33 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.16 -9.58 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086026734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds