Wall clock time and date at job start Tue Mar 31 2020 00:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.84739 * 336.20171 * 10 9 7 12 12 C 1.53782 * 113.61341 * 107.50054 * 10 9 7 13 13 C 1.53779 * 87.07959 * 139.98387 * 12 10 9 14 14 H 1.08997 * 113.69318 * 89.12839 * 13 12 10 15 15 C 1.52998 * 113.61668 * 220.02121 * 13 12 10 16 16 N 1.46497 * 109.47283 * 272.49720 * 15 13 12 17 17 C 1.34777 * 120.00227 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99767 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00355 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.64139 * 300.00343 * 19 17 16 21 21 C 1.53029 * 109.64056 * 60.41824 * 19 17 16 22 22 C 1.50068 * 110.14423 * 169.12415 * 21 19 17 23 23 C 1.29445 * 124.07858 * 342.86604 * 22 21 19 24 24 C 1.50066 * 124.07171 * 0.45458 * 23 22 21 25 25 C 1.52946 * 110.30323 * 343.04505 * 24 23 22 26 26 C 1.53778 * 113.61744 * 205.00147 * 10 9 7 27 27 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 29 29 H 1.08995 * 113.62216 * 254.53487 * 12 10 9 30 30 H 1.09004 * 113.61009 * 25.43814 * 12 10 9 31 31 H 1.09004 * 109.47333 * 32.50112 * 15 13 12 32 32 H 1.09006 * 109.47270 * 152.49719 * 15 13 12 33 33 H 0.96997 * 120.00223 * 0.02562 * 16 15 13 34 34 H 1.08999 * 109.36000 * 289.32992 * 21 19 17 35 35 H 1.08997 * 109.35724 * 49.05583 * 21 19 17 36 36 H 1.07998 * 117.95987 * 162.84801 * 22 21 19 37 37 H 1.07994 * 117.96358 * 180.46961 * 23 22 21 38 38 H 1.08994 * 109.36326 * 103.09672 * 24 23 22 39 39 H 1.09008 * 109.35343 * 222.81599 * 24 23 22 40 40 H 1.08998 * 109.44433 * 289.48808 * 25 24 23 41 41 H 1.09003 * 109.80191 * 168.88484 * 25 24 23 42 42 H 1.09001 * 113.61099 * 334.56839 * 26 10 9 43 43 H 1.09002 * 113.61449 * 105.46880 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 3.0655 -3.5639 -0.4046 12 6 2.0003 -4.4015 1.3458 13 6 1.8486 -5.6973 0.5317 14 1 2.7982 -6.1644 0.2710 15 6 0.8460 -6.6846 1.1324 16 7 1.5278 -7.5422 2.1049 17 6 0.8381 -8.4937 2.7647 18 8 -0.3471 -8.6403 2.5529 19 6 1.5394 -9.3755 3.7655 20 1 2.3385 -9.9276 3.2708 21 6 2.1263 -8.5151 4.8867 22 6 2.5924 -9.3861 6.0164 23 6 2.2303 -10.6181 6.1795 24 6 1.3015 -11.3506 5.2560 25 6 0.5352 -10.3598 4.3784 26 6 1.2599 -4.8290 -0.5928 27 1 -0.4849 -0.8401 0.0004 28 1 0.3557 -2.3881 0.0016 29 1 2.9287 -4.3492 1.9144 30 1 1.1223 -4.1560 1.9435 31 1 0.0476 -6.1342 1.6301 32 1 0.4226 -7.3005 0.3388 33 1 2.4756 -7.4247 2.2746 34 1 2.9698 -7.9434 4.4996 35 1 1.3627 -7.8292 5.2533 36 1 3.2725 -8.9584 6.7382 37 1 2.6208 -11.1519 7.0332 38 1 1.8792 -12.0202 4.6189 39 1 0.5929 -11.9338 5.8443 40 1 -0.1851 -9.8157 4.9892 41 1 0.0157 -10.8955 3.5838 42 1 0.1796 -4.7004 -0.5250 43 1 1.5907 -5.1218 -1.5892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086026734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:31 Heat of formation + Delta-G solvation = -32.394690 kcal Electronic energy + Delta-G solvation = -21102.622508 eV Core-core repulsion = 17954.006611 eV Total energy + Delta-G solvation = -3148.615897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31382 -40.08578 -38.55702 -36.31041 -35.23464 -32.53601 -31.89335 -31.60774 -28.56016 -26.55747 -25.78532 -24.77249 -23.73802 -22.56481 -21.44178 -20.44220 -19.36744 -18.87210 -18.28149 -17.28132 -16.82490 -16.71693 -16.14882 -15.99899 -15.69729 -15.21476 -15.09351 -14.71357 -14.52860 -14.24193 -13.96494 -13.46098 -13.35050 -13.28820 -13.15991 -13.04776 -12.64110 -12.57479 -12.08569 -11.98134 -11.82986 -11.75186 -11.66222 -11.41690 -11.32939 -11.05660 -10.85911 -10.67993 -10.10945 -9.88093 -9.09933 -8.40410 -5.33936 1.41305 1.57801 1.59197 1.69596 1.80913 2.17161 2.71490 3.37484 3.52523 3.62215 3.66136 3.69820 3.79635 3.87464 4.09078 4.19558 4.25260 4.27681 4.33446 4.39633 4.45916 4.47756 4.60716 4.70202 4.72178 4.87377 4.87865 4.90482 4.96342 5.03796 5.04895 5.13234 5.24335 5.28309 5.31683 5.40934 5.59374 5.64712 5.76782 6.05655 6.47831 6.53800 7.08802 7.22762 7.99153 8.12168 9.11552 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.002771 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.714963 B =10103.893856 C =10530.748978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.110 4.110 3 Si 1.133 2.867 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.330 4.330 8 H 0.070 0.930 9 N -0.743 5.743 10 C 0.147 3.853 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.093 4.093 14 H 0.124 0.876 15 C 0.138 3.862 16 N -0.713 5.713 17 C 0.511 3.489 18 O -0.589 6.589 19 C -0.099 4.099 20 H 0.122 0.878 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.090 4.090 25 C -0.101 4.101 26 C -0.138 4.138 27 H 0.243 0.757 28 H 0.358 0.642 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 -24.247 9.588 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.301 4.301 3 Si 0.958 3.042 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.462 4.462 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.038 3.962 11 H 0.097 0.903 12 C -0.193 4.193 13 C -0.112 4.112 14 H 0.142 0.858 15 C 0.013 3.987 16 N -0.364 5.364 17 C 0.299 3.701 18 O -0.470 6.470 19 C -0.120 4.120 20 H 0.140 0.860 21 C -0.118 4.118 22 C -0.181 4.181 23 C -0.176 4.176 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.178 4.178 27 H 0.054 0.946 28 H 0.190 0.810 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.871 -22.670 9.413 26.100 hybrid contribution -0.388 -1.241 0.057 1.301 sum 8.483 -23.911 9.470 27.081 Atomic orbital electron populations 1.70938 1.07319 1.27873 1.56637 1.27252 0.97125 1.04918 1.00793 0.82551 0.73859 0.71394 0.76416 1.19295 1.21885 1.21967 1.20524 0.92466 0.87097 1.46065 0.91175 1.42674 1.04544 1.02146 1.88895 1.21911 0.95513 0.83434 0.95372 0.90265 1.23706 1.01046 0.96129 0.98410 1.22455 0.99530 0.92904 0.96266 0.85810 1.21192 0.94744 0.91586 0.91137 1.45948 1.13959 1.34586 1.41946 1.21252 0.86907 0.80666 0.81324 1.90686 1.17761 1.71355 1.67183 1.21412 0.99538 0.96338 0.94688 0.86000 1.20429 1.00808 0.97149 0.93463 1.22073 1.01321 0.95724 0.98959 1.22263 0.98865 0.96313 1.00123 1.20491 0.97670 0.97389 0.97079 1.21392 0.96830 0.96702 0.99010 1.23347 0.99785 0.95970 0.98696 0.94641 0.81019 0.91203 0.92836 0.93898 0.91756 0.74706 0.88602 0.91957 0.86381 0.86358 0.89394 0.89895 0.93137 0.91759 0.91637 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.49 13.70 21.65 0.30 -62.19 16 2 C -0.11 -6.47 5.50 84.86 0.47 -6.00 16 3 Si 1.13 52.35 29.92 68.60 2.05 54.40 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.33 -18.58 9.97 84.03 0.84 -17.74 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.67 5.40 -320.44 -1.73 -39.40 16 10 C 0.15 5.58 4.48 45.52 0.20 5.79 16 11 H 0.08 2.96 8.10 -2.38 -0.02 2.94 16 12 C -0.15 -4.81 7.43 31.12 0.23 -4.58 16 13 C -0.09 -2.22 3.75 -10.27 -0.04 -2.25 16 14 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.42 5.51 86.38 0.48 3.90 16 16 N -0.71 -14.32 5.47 -463.05 -2.53 -16.85 16 17 C 0.51 12.05 7.13 87.66 0.63 12.67 16 18 O -0.59 -19.62 15.90 -3.05 -0.05 -19.67 16 19 C -0.10 -1.60 2.57 -11.40 -0.03 -1.63 16 20 H 0.12 1.42 8.13 -2.39 -0.02 1.40 16 21 C -0.08 -1.15 5.28 29.66 0.16 -1.00 16 22 C -0.16 -2.05 9.80 27.04 0.27 -1.78 16 23 C -0.16 -1.86 9.81 27.04 0.27 -1.59 16 24 C -0.09 -1.07 6.11 29.63 0.18 -0.89 16 25 C -0.10 -1.78 4.70 30.71 0.14 -1.64 16 26 C -0.14 -4.22 7.39 31.12 0.23 -3.99 16 27 H 0.24 15.52 6.77 -92.71 -0.63 14.89 16 28 H 0.36 19.26 6.75 -92.71 -0.63 18.63 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.96 7.90 -2.38 -0.02 1.94 16 31 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.42 5.67 8.17 -92.71 -0.76 4.92 16 34 H 0.10 1.01 7.91 -2.39 -0.02 0.99 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 41 H 0.06 1.26 7.90 -2.39 -0.02 1.24 16 42 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.73 347.73 1.80 -71.92 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.25 Total: 32.52 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 4.02 Total: -20.73 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -3.96 Total: -118.44 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.05 Total: 54.40 kcal Total: -73.73 1.80 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086026734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.530 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds