Wall clock time and date at job start Tue Mar 31 2020 00:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84942 * 25.32959 * 10 9 7 12 12 C 1.53781 * 113.61562 * 156.52648 * 10 9 7 13 13 C 1.53786 * 87.07827 * 89.11795 * 12 10 9 14 14 H 1.09003 * 113.61117 * 270.88595 * 13 12 10 15 15 C 1.52995 * 113.61162 * 140.06748 * 13 12 10 16 16 N 1.46500 * 109.47088 * 174.99724 * 15 13 12 17 17 C 1.34777 * 120.00084 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00070 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.64065 * 299.58297 * 19 17 16 21 21 C 1.53020 * 109.64378 * 59.99842 * 19 17 16 22 22 C 1.50069 * 110.15057 * 169.12104 * 21 19 17 23 23 C 1.29441 * 124.07032 * 342.87303 * 22 21 19 24 24 C 1.50061 * 124.07950 * 0.49037 * 23 22 21 25 25 C 1.53040 * 110.14063 * 342.83335 * 24 23 22 26 26 C 1.53783 * 113.61722 * 254.13752 * 10 9 7 27 27 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.09000 * 113.61420 * 203.66386 * 12 10 9 30 30 H 1.08993 * 113.61235 * 334.48750 * 12 10 9 31 31 H 1.09002 * 109.47334 * 294.99840 * 15 13 12 32 32 H 1.08999 * 109.47308 * 55.00001 * 15 13 12 33 33 H 0.97000 * 120.00181 * 0.02562 * 16 15 13 34 34 H 1.09006 * 109.36323 * 289.33089 * 21 19 17 35 35 H 1.09000 * 109.35698 * 49.05242 * 21 19 17 36 36 H 1.07998 * 117.96268 * 162.84593 * 22 21 19 37 37 H 1.08010 * 117.96060 * 180.46610 * 23 22 21 38 38 H 1.09004 * 109.36324 * 103.05338 * 24 23 22 39 39 H 1.09005 * 109.36043 * 222.77086 * 24 23 22 40 40 H 1.09002 * 109.65304 * 289.77720 * 25 24 23 41 41 H 1.09003 * 109.63689 * 169.14400 * 25 24 23 42 42 H 1.09008 * 113.61277 * 25.42740 * 26 10 9 43 43 H 1.08992 * 113.61683 * 156.33587 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0559 -3.5694 0.4303 12 6 1.2467 -4.8365 0.5618 13 6 0.7400 -5.0678 -0.8716 14 1 -0.1654 -4.5095 -1.1101 15 6 0.6459 -6.5453 -1.2574 16 7 0.0447 -6.6653 -2.5880 17 6 -0.1382 -7.8822 -3.1376 18 8 0.1945 -8.8780 -2.5305 19 6 -0.7562 -8.0056 -4.5066 20 1 -1.7581 -7.5764 -4.4963 21 6 0.1091 -7.2671 -5.5300 22 6 -0.3409 -7.5987 -6.9227 23 6 -1.0880 -8.6127 -7.2213 24 6 -1.6172 -9.5924 -6.2153 25 6 -0.8279 -9.4841 -4.9086 26 6 2.0325 -4.3829 -1.3548 27 1 -0.4849 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 1.8648 -5.6494 0.9429 30 1 0.4651 -4.5362 1.2595 31 1 1.6445 -6.9821 -1.2692 32 1 0.0275 -7.0720 -0.5305 33 1 -0.2211 -5.8689 -3.0737 34 1 0.0223 -6.1926 -5.3684 35 1 1.1496 -7.5679 -5.4075 36 1 -0.0219 -6.9507 -7.7257 37 1 -1.3469 -8.7628 -8.2591 38 1 -2.6684 -9.3790 -6.0214 39 1 -1.5208 -10.6037 -6.6104 40 1 0.1797 -9.8731 -5.0556 41 1 -1.3330 -10.0522 -4.1274 42 1 1.8837 -3.7164 -2.2045 43 1 2.8649 -5.0720 -1.4967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086306219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:37 Heat of formation + Delta-G solvation = -10.542879 kcal Electronic energy + Delta-G solvation = -21206.724457 eV Core-core repulsion = 18059.056125 eV Total energy + Delta-G solvation = -3147.668332 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28802 -38.73294 -37.66814 -34.66597 -33.23420 -31.63169 -31.03672 -30.08456 -27.34650 -25.07773 -24.23044 -23.64882 -22.88878 -21.60987 -20.29491 -18.42270 -18.18278 -17.53191 -17.10457 -16.15661 -15.76548 -15.12505 -14.94520 -14.51750 -14.13876 -14.00172 -13.81923 -13.49334 -13.36217 -13.10934 -12.92504 -12.54410 -12.44361 -12.19752 -11.92545 -11.38168 -11.23835 -11.08589 -11.00418 -10.87649 -10.61739 -10.49416 -10.16569 -10.07038 -9.71556 -9.69615 -9.43972 -9.27494 -8.98151 -8.89688 -7.02317 -5.83254 -3.12218 2.01670 2.63068 3.21464 3.39699 3.45816 3.47852 4.35406 4.41653 4.53640 4.60759 4.92567 4.95435 5.03416 5.05174 5.09781 5.17325 5.24035 5.27573 5.40168 5.43442 5.58503 5.61511 5.64923 5.68795 5.72164 5.86216 5.95026 5.96090 6.05714 6.10237 6.20067 6.35569 6.36722 6.44403 6.58474 6.66340 6.72684 6.88837 7.02639 7.53507 7.67389 8.23257 8.36021 9.46787 10.04334 10.38552 11.39289 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.003052 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.633403 B = 9171.389962 C = 9906.886585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.147 4.147 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.723 5.723 17 C 0.515 3.485 18 O -0.546 6.546 19 C -0.108 4.108 20 H 0.099 0.901 21 C -0.083 4.083 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.093 4.093 25 C -0.099 4.099 26 C -0.168 4.168 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -17.220 -11.687 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 H 0.079 0.921 12 C -0.187 4.187 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.374 5.374 17 C 0.301 3.699 18 O -0.424 6.424 19 C -0.130 4.130 20 H 0.117 0.883 21 C -0.120 4.120 22 C -0.170 4.170 23 C -0.176 4.176 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.209 4.209 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.070 -17.750 -11.212 21.097 hybrid contribution -0.083 1.406 -0.402 1.465 sum -2.153 -16.344 -11.614 20.166 Atomic orbital electron populations 1.69668 1.05138 1.25677 1.57582 1.24767 0.95547 0.97799 1.02818 0.86102 0.78826 0.83968 0.77204 1.20487 1.21838 1.21818 1.19334 0.91151 0.83953 1.42786 0.90947 1.42179 1.05682 0.99450 1.87189 1.21055 0.95016 0.85605 0.92844 0.92082 1.23419 1.00598 0.99652 0.95038 1.22754 0.99575 0.93046 0.98435 0.88921 1.21471 0.97959 0.97031 0.82843 1.46117 1.63262 1.08307 1.19736 1.20603 0.78491 0.83228 0.87611 1.90681 1.51076 1.36843 1.63784 1.21412 1.00766 0.98920 0.91871 0.88327 1.20434 0.99558 1.00375 0.91667 1.22002 0.99541 0.98266 0.97234 1.22082 0.99486 0.96526 0.99460 1.20509 0.99697 0.98622 0.94153 1.21417 1.01499 0.94006 0.96744 1.23926 0.95512 0.99565 1.01901 0.93486 0.78120 0.90462 0.91337 0.91662 0.91922 0.76356 0.90192 0.90259 0.87541 0.87914 0.90751 0.90759 0.91159 0.90673 0.91489 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.21 5.31 -52.64 -0.28 -17.49 16 10 C 0.17 3.22 4.55 -67.12 -0.31 2.91 16 11 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 12 C -0.15 -2.34 7.38 -25.92 -0.19 -2.53 16 13 C -0.12 -1.76 3.64 -89.67 -0.33 -2.08 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 16 N -0.72 -8.68 5.46 -60.30 -0.33 -9.01 16 17 C 0.51 6.57 7.14 -10.98 -0.08 6.49 16 18 O -0.55 -8.96 15.90 5.56 0.09 -8.88 16 19 C -0.11 -1.05 2.58 -91.56 -0.24 -1.29 16 20 H 0.10 0.85 8.13 -51.93 -0.42 0.43 16 21 C -0.08 -0.73 5.27 -28.18 -0.15 -0.87 16 22 C -0.15 -1.24 9.80 -35.90 -0.35 -1.59 16 23 C -0.16 -1.22 9.80 -35.90 -0.35 -1.57 16 24 C -0.09 -0.70 6.12 -28.17 -0.17 -0.87 16 25 C -0.10 -0.94 4.70 -26.51 -0.12 -1.07 16 26 C -0.17 -2.75 7.45 -25.78 -0.19 -2.94 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.38 9.91 7.90 -40.82 -0.32 9.58 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 4.18 8.14 -40.82 -0.33 3.84 16 34 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 41 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 42 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 43 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -31.02 349.28 -9.63 -40.65 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.33 Total: 10.23 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.75 Total: -10.89 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.12 Total: -53.37 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.02 -9.63 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086306219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.107 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds