Wall clock time and date at job start Tue Mar 31 2020 00:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85556 * 336.19726 * 10 9 7 12 12 C 1.53788 * 113.61090 * 107.50380 * 10 9 7 13 13 C 1.53779 * 87.08079 * 89.11615 * 12 10 9 14 14 H 1.09003 * 113.61336 * 270.88803 * 13 12 10 15 15 C 1.53004 * 113.69416 * 139.98946 * 13 12 10 16 16 N 1.46503 * 109.46753 * 87.46458 * 15 13 12 17 17 C 1.34774 * 120.00027 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00247 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.52610 * 325.49890 * 19 17 16 21 21 C 1.53000 * 117.45981 * 110.95938 * 19 17 16 22 22 H 1.08998 * 119.30220 * 356.28760 * 21 19 17 23 23 C 1.54270 * 118.19696 * 201.21815 * 21 19 17 24 24 C 1.54891 * 104.19000 * 272.20766 * 23 21 19 25 25 C 1.54885 * 102.75079 * 37.94491 * 24 23 21 26 26 C 1.52998 * 117.46185 * 180.02562 * 19 17 16 27 27 H 1.09004 * 119.29998 * 4.64228 * 26 19 17 28 28 C 1.53780 * 113.61432 * 204.99886 * 10 9 7 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.09004 * 113.61068 * 203.65633 * 12 10 9 32 32 H 1.08996 * 113.61416 * 334.56660 * 12 10 9 33 33 H 1.09000 * 109.47372 * 207.46485 * 15 13 12 34 34 H 1.09004 * 109.46747 * 327.46458 * 15 13 12 35 35 H 0.97003 * 119.99795 * 359.97438 * 16 15 13 36 36 H 1.08999 * 110.48585 * 153.53350 * 23 21 19 37 37 H 1.08998 * 110.60024 * 30.94054 * 23 21 19 38 38 H 1.09001 * 110.75706 * 279.62125 * 24 23 21 39 39 H 1.09009 * 110.75634 * 156.26153 * 24 23 21 40 40 H 1.08999 * 110.48370 * 203.37873 * 25 24 23 41 41 H 1.08993 * 110.60058 * 80.79052 * 25 24 23 42 42 H 1.09003 * 113.61267 * 25.43590 * 28 10 9 43 43 H 1.09004 * 113.61818 * 156.25397 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9992 -4.4020 1.3444 13 6 0.7206 -5.0791 0.8232 14 1 -0.1901 -4.5239 1.0479 15 6 0.6179 -6.5617 1.1870 16 7 -0.0140 -6.6992 2.5016 17 6 -0.2093 -7.9232 3.0306 18 8 0.1375 -8.9110 2.4181 19 6 -0.8587 -8.0647 4.3831 20 1 -0.6264 -7.2775 5.1003 21 6 -2.2626 -8.6711 4.4317 22 1 -2.7682 -8.9214 3.4991 23 6 -3.1382 -8.3840 5.6690 24 6 -2.7598 -9.5037 6.6701 25 6 -1.2345 -9.6581 6.4497 26 6 -1.0517 -9.4811 4.9284 27 1 -0.6518 -10.3271 4.3693 28 6 1.2604 -4.8287 -0.5949 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.8281 -5.0933 1.4970 32 1 1.8293 -3.7478 2.1995 33 1 0.0166 -7.0785 0.4390 34 1 1.6161 -6.9986 1.2160 35 1 -0.2910 -5.9092 2.9915 36 1 -4.1953 -8.4446 5.4106 37 1 -2.9038 -7.4045 6.0857 38 1 -3.2808 -10.4302 6.4285 39 1 -2.9730 -9.1951 7.6936 40 1 -0.9024 -10.6485 6.7611 41 1 -0.6886 -8.8860 6.9917 42 1 0.4940 -4.5189 -1.3055 43 1 1.8872 -5.6360 -0.9738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086332486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:27 Heat of formation + Delta-G solvation = 6.424251 kcal Electronic energy + Delta-G solvation = -20944.989186 eV Core-core repulsion = 17798.056604 eV Total energy + Delta-G solvation = -3146.932582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.53842 -39.02073 -38.10548 -34.62934 -33.20672 -32.06298 -30.18514 -28.56078 -27.63241 -25.07339 -24.35445 -23.41371 -21.67918 -21.00284 -20.20339 -19.94017 -18.45010 -17.61052 -17.17003 -16.15284 -15.48907 -15.28000 -15.09168 -14.74423 -14.10064 -14.03861 -13.54629 -13.48619 -13.28184 -13.00025 -12.89121 -12.28819 -11.93895 -11.79091 -11.61106 -11.46464 -11.39510 -11.18171 -11.05757 -10.85549 -10.50844 -10.37895 -10.20623 -10.16120 -10.03287 -9.72844 -9.70779 -9.44812 -8.98775 -8.89560 -7.02125 -5.82746 -3.11857 2.39876 3.08529 3.40388 3.45861 3.47452 3.49476 4.23824 4.39521 4.44578 4.54008 4.84877 4.88435 4.90702 5.04860 5.08105 5.10621 5.14038 5.23651 5.28273 5.40135 5.43599 5.51590 5.61807 5.68794 5.70515 5.74848 5.78732 5.86633 5.95613 5.97185 6.07505 6.10211 6.20356 6.36120 6.43451 6.58414 6.73147 6.88973 7.02950 7.53216 7.67182 8.22298 8.36532 9.47164 10.04672 10.38890 11.39709 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002817 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.410942 B = 9938.904287 C =10579.025799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.541 3.459 18 O -0.547 6.547 19 C -0.164 4.164 20 H 0.120 0.880 21 C -0.137 4.137 22 H 0.114 0.886 23 C -0.097 4.097 24 C -0.123 4.123 25 C -0.098 4.098 26 C -0.132 4.132 27 H 0.121 0.879 28 C -0.148 4.148 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -18.138 11.490 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.327 3.673 18 O -0.425 6.425 19 C -0.185 4.185 20 H 0.138 0.862 21 C -0.156 4.156 22 H 0.132 0.868 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.135 4.135 26 C -0.150 4.150 27 H 0.139 0.861 28 C -0.188 4.188 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.173 -18.656 11.002 22.057 hybrid contribution 0.006 1.385 0.219 1.402 sum -4.167 -17.271 11.221 21.014 Atomic orbital electron populations 1.69663 1.05139 1.25796 1.57498 1.24766 0.95550 0.97803 1.02788 0.86166 0.78677 0.83666 0.77536 1.21679 1.20685 1.21742 1.19294 0.91129 0.83969 1.42928 0.90986 1.42174 1.05683 0.99443 1.87146 1.21056 0.95108 0.85587 0.92750 0.91952 1.23890 0.95667 0.99617 1.01759 1.22713 0.99588 0.92916 0.98619 0.88880 1.21490 0.97559 0.97037 0.83130 1.46002 1.61849 1.08034 1.21019 1.19585 0.78388 0.83246 0.86107 1.90683 1.51565 1.37811 1.62461 1.22387 1.00292 0.99109 0.96686 0.86186 1.23241 0.88350 1.03642 1.00321 0.86802 1.22008 0.99074 0.99053 0.93296 1.22699 0.95458 0.98844 0.99071 1.22008 0.96246 1.02211 0.93064 1.23240 1.02008 0.93689 0.96076 0.86062 1.23446 1.00504 0.99702 0.95121 0.93431 0.78114 0.91415 0.91507 0.91886 0.91594 0.76209 0.90825 0.90996 0.91147 0.91141 0.90891 0.91181 0.91327 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.30 5.31 -52.64 -0.28 -17.58 16 10 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 11 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 12 C -0.17 -2.79 7.43 -25.92 -0.19 -2.99 16 13 C -0.12 -1.79 3.63 -89.80 -0.33 -2.12 16 14 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 15 C 0.13 1.79 5.52 -4.04 -0.02 1.77 16 16 N -0.72 -9.04 5.56 -60.29 -0.33 -9.37 16 17 C 0.54 7.29 7.61 -10.99 -0.08 7.21 16 18 O -0.55 -9.32 16.33 5.55 0.09 -9.23 16 19 C -0.16 -1.69 5.73 -91.77 -0.53 -2.22 16 20 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 21 C -0.14 -1.27 6.64 -89.48 -0.59 -1.86 16 22 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.10 -0.70 6.63 -25.07 -0.17 -0.86 16 24 C -0.12 -0.79 6.91 -24.74 -0.17 -0.96 16 25 C -0.10 -0.72 6.62 -25.09 -0.17 -0.88 16 26 C -0.13 -1.27 6.39 -89.49 -0.57 -1.85 16 27 H 0.12 1.35 7.79 -51.93 -0.40 0.94 16 28 C -0.15 -2.37 7.39 -25.92 -0.19 -2.57 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.96 7.90 -40.82 -0.32 9.64 16 31 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -31.19 351.60 -10.44 -41.63 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.35 Total: 10.78 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.56 Total: -11.61 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.11 Total: -53.93 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.19 -10.44 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086332486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.056 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds