Wall clock time and date at job start Tue Mar 31 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85556 * 336.19726 * 10 9 7 12 12 C 1.53788 * 113.61090 * 107.50380 * 10 9 7 13 13 C 1.53779 * 87.08079 * 89.11615 * 12 10 9 14 14 H 1.09003 * 113.61336 * 270.88803 * 13 12 10 15 15 C 1.53004 * 113.69416 * 139.98946 * 13 12 10 16 16 N 1.46503 * 109.46753 * 87.46458 * 15 13 12 17 17 C 1.34774 * 120.00027 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00247 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.52610 * 325.49890 * 19 17 16 21 21 C 1.53000 * 117.45981 * 110.95938 * 19 17 16 22 22 H 1.08998 * 119.30220 * 356.28760 * 21 19 17 23 23 C 1.54270 * 118.19696 * 201.21815 * 21 19 17 24 24 C 1.54891 * 104.19000 * 272.20766 * 23 21 19 25 25 C 1.54885 * 102.75079 * 37.94491 * 24 23 21 26 26 C 1.52998 * 117.46185 * 180.02562 * 19 17 16 27 27 H 1.09004 * 119.29998 * 4.64228 * 26 19 17 28 28 C 1.53780 * 113.61432 * 204.99886 * 10 9 7 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.09004 * 113.61068 * 203.65633 * 12 10 9 32 32 H 1.08996 * 113.61416 * 334.56660 * 12 10 9 33 33 H 1.09000 * 109.47372 * 207.46485 * 15 13 12 34 34 H 1.09004 * 109.46747 * 327.46458 * 15 13 12 35 35 H 0.97003 * 119.99795 * 359.97438 * 16 15 13 36 36 H 1.08999 * 110.48585 * 153.53350 * 23 21 19 37 37 H 1.08998 * 110.60024 * 30.94054 * 23 21 19 38 38 H 1.09001 * 110.75706 * 279.62125 * 24 23 21 39 39 H 1.09009 * 110.75634 * 156.26153 * 24 23 21 40 40 H 1.08999 * 110.48370 * 203.37873 * 25 24 23 41 41 H 1.08993 * 110.60058 * 80.79052 * 25 24 23 42 42 H 1.09003 * 113.61267 * 25.43590 * 28 10 9 43 43 H 1.09004 * 113.61818 * 156.25397 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9992 -4.4020 1.3444 13 6 0.7206 -5.0791 0.8232 14 1 -0.1901 -4.5239 1.0479 15 6 0.6179 -6.5617 1.1870 16 7 -0.0140 -6.6992 2.5016 17 6 -0.2093 -7.9232 3.0306 18 8 0.1375 -8.9110 2.4181 19 6 -0.8587 -8.0647 4.3831 20 1 -0.6264 -7.2775 5.1003 21 6 -2.2626 -8.6711 4.4317 22 1 -2.7682 -8.9214 3.4991 23 6 -3.1382 -8.3840 5.6690 24 6 -2.7598 -9.5037 6.6701 25 6 -1.2345 -9.6581 6.4497 26 6 -1.0517 -9.4811 4.9284 27 1 -0.6518 -10.3271 4.3693 28 6 1.2604 -4.8287 -0.5949 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.8281 -5.0933 1.4970 32 1 1.8293 -3.7478 2.1995 33 1 0.0166 -7.0785 0.4390 34 1 1.6161 -6.9986 1.2160 35 1 -0.2910 -5.9092 2.9915 36 1 -4.1953 -8.4446 5.4106 37 1 -2.9038 -7.4045 6.0857 38 1 -3.2808 -10.4302 6.4285 39 1 -2.9730 -9.1951 7.6936 40 1 -0.9024 -10.6485 6.7611 41 1 -0.6886 -8.8860 6.9917 42 1 0.4940 -4.5189 -1.3055 43 1 1.8872 -5.6360 -0.9738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086332486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:26 Heat of formation + Delta-G solvation = -12.407548 kcal Electronic energy + Delta-G solvation = -20945.805794 eV Core-core repulsion = 17798.056604 eV Total energy + Delta-G solvation = -3147.749190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45186 -40.24728 -39.19371 -36.01870 -34.95606 -32.78370 -32.02474 -29.16118 -28.94774 -26.45154 -25.91823 -24.78449 -22.97425 -21.71456 -21.12910 -20.65924 -19.84698 -19.33987 -18.43158 -17.24359 -16.72457 -16.43448 -16.23717 -15.94173 -15.55996 -15.41607 -14.71123 -14.65694 -14.54085 -14.03809 -13.83097 -13.71713 -13.30947 -12.94792 -12.92720 -12.63581 -12.47057 -12.28077 -12.17211 -12.07996 -11.99112 -11.70016 -11.56281 -11.49226 -11.14623 -11.05888 -10.93876 -10.83036 -10.57836 -10.09615 -9.00679 -7.95831 -5.24253 1.39692 1.48108 1.49111 1.57693 2.10003 2.55511 2.69744 3.36595 3.47850 3.69414 3.70390 3.75898 3.77843 3.84608 4.08394 4.15062 4.20414 4.25400 4.30954 4.38779 4.48134 4.52201 4.68247 4.70743 4.74246 4.82143 4.91405 4.97530 4.98873 5.10154 5.15365 5.21617 5.22060 5.26336 5.28392 5.33838 5.47352 5.50337 5.53831 5.64931 6.27932 6.50885 7.17994 7.32933 8.09755 8.32234 9.27463 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002817 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.410942 B = 9938.904287 C =10579.025799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.296 1.296 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.060 0.940 12 C -0.153 4.153 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.140 3.860 16 N -0.713 5.713 17 C 0.538 3.462 18 O -0.587 6.587 19 C -0.169 4.169 20 H 0.140 0.860 21 C -0.133 4.133 22 H 0.102 0.898 23 C -0.094 4.094 24 C -0.119 4.119 25 C -0.094 4.094 26 C -0.137 4.137 27 H 0.101 0.899 28 C -0.135 4.135 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -18.775 12.804 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.078 0.922 12 C -0.193 4.193 13 C -0.121 4.121 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.363 5.363 17 C 0.325 3.675 18 O -0.469 6.469 19 C -0.189 4.189 20 H 0.158 0.842 21 C -0.152 4.152 22 H 0.120 0.880 23 C -0.131 4.131 24 C -0.156 4.156 25 C -0.132 4.132 26 C -0.156 4.156 27 H 0.119 0.881 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.808 -19.317 12.329 23.231 hybrid contribution -0.051 1.494 -0.231 1.513 sum -3.859 -17.823 12.098 21.884 Atomic orbital electron populations 1.69811 1.06556 1.26091 1.59506 1.25551 0.96393 1.01054 1.03743 0.85151 0.77714 0.79547 0.77419 1.21398 1.19482 1.22291 1.19670 0.91525 0.85180 1.41057 0.90573 1.42304 1.05331 1.00549 1.87620 1.21378 0.95069 0.84907 0.95229 0.92182 1.23712 0.97229 0.99197 0.99200 1.22493 0.98411 0.93537 0.97639 0.89980 1.21309 0.97708 0.95636 0.83719 1.45961 1.61358 1.08379 1.20649 1.20112 0.77739 0.82671 0.86941 1.90661 1.53363 1.39029 1.63799 1.22400 1.01033 1.00247 0.95260 0.84226 1.23334 0.88212 1.02844 1.00839 0.87972 1.22053 0.99033 0.99753 0.92300 1.22701 0.94547 0.98670 0.99704 1.22039 0.97167 1.02911 0.91036 1.23298 1.02067 0.92573 0.97667 0.88109 1.23354 0.99992 0.98692 0.95395 0.93996 0.79344 0.89108 0.93230 0.92084 0.91510 0.75133 0.90013 0.90274 0.90935 0.89497 0.90183 0.90496 0.92358 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.72 -35.49 5.31 -320.45 -1.70 -37.19 16 10 C 0.14 5.49 4.56 45.52 0.21 5.69 16 11 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 12 C -0.15 -4.86 7.43 31.12 0.23 -4.62 16 13 C -0.10 -2.93 3.63 -10.27 -0.04 -2.97 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 15 C 0.14 3.63 5.52 86.38 0.48 4.10 16 16 N -0.71 -17.13 5.56 -463.04 -2.57 -19.70 16 17 C 0.54 14.16 7.61 87.66 0.67 14.82 16 18 O -0.59 -20.04 16.33 -3.07 -0.05 -20.09 16 19 C -0.17 -3.29 5.73 -11.54 -0.07 -3.36 16 20 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 21 C -0.13 -2.33 6.64 -10.05 -0.07 -2.39 16 22 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 23 C -0.09 -1.14 6.63 31.67 0.21 -0.93 16 24 C -0.12 -1.22 6.91 31.88 0.22 -1.00 16 25 C -0.09 -1.19 6.62 31.66 0.21 -0.98 16 26 C -0.14 -2.55 6.39 -10.06 -0.06 -2.61 16 27 H 0.10 2.29 7.79 -2.38 -0.02 2.27 16 28 C -0.14 -4.14 7.39 31.12 0.23 -3.91 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.37 19.74 7.90 -92.71 -0.73 19.01 16 31 H 0.09 2.49 7.90 -2.38 -0.02 2.47 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.77 7.85 -2.38 -0.02 1.75 16 35 H 0.41 8.45 8.47 -92.71 -0.79 7.67 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 2.66 8.10 -2.39 -0.02 2.65 16 Total: -1.00 -67.27 351.60 0.99 -66.28 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.52 Total: 35.68 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.52 Total: -14.38 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.99 Total: -115.07 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.27 0.99 -66.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086332486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.868 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds