Wall clock time and date at job start Tue Mar 31 2020 00:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.53003 * 110.07613 * 119.30250 * 14 13 12 17 17 N 1.46504 * 109.46689 * 67.81048 * 16 14 13 18 18 C 1.34776 * 119.99527 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99746 * 180.02562 * 18 17 16 21 21 C 1.54634 * 111.03677 * 295.32835 * 20 18 17 22 22 C 1.51160 * 104.69695 * 217.36113 * 21 20 18 23 23 C 1.30530 * 111.12069 * 16.38371 * 22 21 20 24 24 C 1.51104 * 111.10204 * 0.03265 * 23 22 21 25 25 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 26 26 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 29 29 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 30 30 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 31 31 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 32 32 H 1.08994 * 109.47097 * 187.81197 * 16 14 13 33 33 H 1.08997 * 109.46816 * 307.81260 * 16 14 13 34 34 H 0.96995 * 119.99832 * 359.97438 * 17 16 14 35 35 H 1.08994 * 110.91199 * 59.29523 * 20 18 17 36 36 H 1.09002 * 110.38782 * 336.14990 * 21 20 18 37 37 H 1.09001 * 110.38583 * 98.52154 * 21 20 18 38 38 H 1.07998 * 124.43682 * 196.40602 * 22 21 20 39 39 H 1.07993 * 124.44998 * 180.02562 * 23 22 21 40 40 H 1.08994 * 110.39137 * 224.75241 * 24 23 22 41 41 H 1.08998 * 110.38687 * 102.37238 * 24 23 22 42 42 H 1.09002 * 110.48043 * 217.71140 * 25 14 13 43 43 H 1.09000 * 110.48785 * 95.07352 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6659 -7.0826 -0.2784 17 7 1.2480 -8.3467 -0.7361 18 6 0.4458 -9.3824 -1.0527 19 8 -0.7579 -9.2681 -0.9584 20 6 1.0446 -10.6830 -1.5230 21 6 1.7754 -10.5014 -2.8736 22 6 1.4888 -11.7731 -3.6388 23 6 0.4888 -12.4247 -3.1104 24 6 -0.0592 -11.6962 -1.9052 25 6 1.1963 -4.7884 0.6130 26 1 -0.4849 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 1.4299 -3.9357 -2.0723 29 1 3.1933 -3.6965 -1.8646 30 1 3.5467 -5.9180 -1.2443 31 1 2.0274 -6.1950 -2.1411 32 1 0.0893 -7.2560 0.6301 33 1 0.0119 -6.6823 -1.0530 34 1 2.2107 -8.4380 -0.8119 35 1 1.7132 -11.0985 -0.7691 36 1 1.3770 -9.6389 -3.4080 37 1 2.8475 -10.3875 -2.7130 38 1 2.0395 -12.0999 -4.5084 39 1 0.1035 -13.3613 -3.4854 40 1 -0.2338 -12.3943 -1.0866 41 1 -0.9806 -11.1744 -2.1635 42 1 1.2908 -4.7954 1.6988 43 1 0.1525 -4.6729 0.3208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086662744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:38 Heat of formation + Delta-G solvation = -28.518910 kcal Electronic energy + Delta-G solvation = -21188.887281 eV Core-core repulsion = 18040.439450 eV Total energy + Delta-G solvation = -3148.447831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.41644 -38.49111 -37.56162 -34.93773 -33.38705 -30.95604 -30.01924 -28.81882 -28.42844 -27.17569 -24.52230 -23.07464 -22.32590 -20.32220 -19.56380 -19.32466 -19.09010 -17.52420 -17.09506 -16.56698 -16.08069 -15.41292 -15.16054 -14.75773 -14.34757 -13.80571 -13.35048 -13.13922 -12.95634 -12.85554 -12.56942 -12.48760 -12.18159 -12.01395 -11.83998 -11.58471 -11.45379 -11.16529 -10.86215 -10.80031 -10.60086 -10.55833 -10.26414 -10.12489 -9.98041 -9.78240 -9.65005 -9.23065 -9.12124 -8.88177 -6.94212 -5.76490 -3.05032 1.92314 2.50873 3.06329 3.43060 3.48518 3.50925 4.13906 4.27146 4.57745 4.59782 4.79901 4.87454 4.92983 4.94960 5.06929 5.23999 5.31059 5.43729 5.51878 5.53860 5.55595 5.64669 5.69492 5.74585 5.86191 5.89297 5.96397 6.03143 6.06528 6.17640 6.23130 6.33180 6.39248 6.46564 6.53075 6.56697 6.71748 6.87434 7.10614 7.39135 7.70959 8.11081 8.42434 9.53289 10.12309 10.46274 11.46273 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044714 B = 0.002708 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.053787 B =10337.237839 C =10560.172411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.055 0.945 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.125 3.875 17 N -0.725 5.725 18 C 0.519 3.481 19 O -0.540 6.540 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.088 4.088 25 C -0.123 4.123 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -24.557 -4.016 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.091 0.909 16 C 0.002 3.998 17 N -0.376 5.376 18 C 0.305 3.695 19 O -0.416 6.416 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.189 4.189 23 C -0.180 4.180 24 C -0.125 4.125 25 C -0.162 4.162 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.736 -24.278 -3.910 25.043 hybrid contribution 0.658 0.869 -0.147 1.099 sum 5.394 -23.409 -4.057 24.363 Atomic orbital electron populations 1.69671 1.05109 1.25546 1.57770 1.24758 0.95520 0.97725 1.03085 0.86131 0.78763 0.84199 0.77182 1.20577 1.21893 1.21885 1.19305 0.91011 0.84165 1.42501 0.91146 1.42403 1.05786 0.99807 1.88048 1.21155 0.94308 0.85610 0.92300 0.92648 1.23074 1.01337 0.92771 1.01299 1.22204 0.99335 0.98042 0.96208 1.21959 0.96509 0.95621 0.97895 0.90866 1.21581 0.95998 0.82330 0.99881 1.46072 1.10257 1.13331 1.67960 1.20371 0.87059 0.85067 0.77014 1.90707 1.14764 1.83191 1.52983 1.22189 0.99047 0.93907 0.98719 1.21339 1.00568 0.97592 0.93240 1.23223 0.99100 0.96213 1.00352 1.23331 0.97316 0.99490 0.97830 1.21290 0.98653 0.96141 0.96455 1.22610 1.00505 0.93347 0.99756 0.93550 0.78189 0.91866 0.92587 0.92455 0.92423 0.91541 0.91171 0.76591 0.87683 0.90104 0.90309 0.85567 0.85586 0.90731 0.88718 0.91770 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.00 5.23 -51.51 -0.27 -18.27 16 10 C 0.18 3.42 3.56 -65.95 -0.23 3.19 16 11 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 12 C -0.14 -2.47 6.51 -25.07 -0.16 -2.63 16 13 C -0.12 -1.52 6.19 -25.61 -0.16 -1.68 16 14 C -0.10 -1.23 2.96 -89.50 -0.26 -1.50 16 15 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.13 1.54 4.69 -4.04 -0.02 1.52 16 17 N -0.73 -7.34 5.34 -60.29 -0.32 -7.66 16 18 C 0.52 6.02 7.06 -10.98 -0.08 5.94 16 19 O -0.54 -8.56 15.54 5.56 0.09 -8.48 16 20 C -0.12 -0.98 3.54 -90.05 -0.32 -1.30 16 21 C -0.09 -0.66 6.37 -26.80 -0.17 -0.83 16 22 C -0.17 -1.23 10.78 -35.67 -0.38 -1.61 16 23 C -0.16 -1.22 10.78 -35.70 -0.38 -1.60 16 24 C -0.09 -0.78 6.16 -26.82 -0.17 -0.95 16 25 C -0.12 -1.95 5.98 -25.09 -0.15 -2.10 16 26 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.38 10.24 7.76 -40.82 -0.32 9.93 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.70 7.62 -51.93 -0.40 0.30 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 2.99 8.35 -40.82 -0.34 2.65 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.68 7.88 -51.93 -0.41 0.27 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.05 7.01 -51.93 -0.36 0.68 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.17 7.73 -51.93 -0.40 0.76 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -32.22 348.18 -9.56 -41.78 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.27 Total: 8.42 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.74 Total: -10.84 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.13 Total: -53.52 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.22 -9.56 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086662744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.266 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds