Wall clock time and date at job start Tue Mar 31 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.53003 * 110.07613 * 119.30250 * 14 13 12 17 17 N 1.46504 * 109.46689 * 67.81048 * 16 14 13 18 18 C 1.34776 * 119.99527 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99746 * 180.02562 * 18 17 16 21 21 C 1.54634 * 111.03677 * 295.32835 * 20 18 17 22 22 C 1.51160 * 104.69695 * 217.36113 * 21 20 18 23 23 C 1.30530 * 111.12069 * 16.38371 * 22 21 20 24 24 C 1.51104 * 111.10204 * 0.03265 * 23 22 21 25 25 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 26 26 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 29 29 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 30 30 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 31 31 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 32 32 H 1.08994 * 109.47097 * 187.81197 * 16 14 13 33 33 H 1.08997 * 109.46816 * 307.81260 * 16 14 13 34 34 H 0.96995 * 119.99832 * 359.97438 * 17 16 14 35 35 H 1.08994 * 110.91199 * 59.29523 * 20 18 17 36 36 H 1.09002 * 110.38782 * 336.14990 * 21 20 18 37 37 H 1.09001 * 110.38583 * 98.52154 * 21 20 18 38 38 H 1.07998 * 124.43682 * 196.40602 * 22 21 20 39 39 H 1.07993 * 124.44998 * 180.02562 * 23 22 21 40 40 H 1.08994 * 110.39137 * 224.75241 * 24 23 22 41 41 H 1.08998 * 110.38687 * 102.37238 * 24 23 22 42 42 H 1.09002 * 110.48043 * 217.71140 * 25 14 13 43 43 H 1.09000 * 110.48785 * 95.07352 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6659 -7.0826 -0.2784 17 7 1.2480 -8.3467 -0.7361 18 6 0.4458 -9.3824 -1.0527 19 8 -0.7579 -9.2681 -0.9584 20 6 1.0446 -10.6830 -1.5230 21 6 1.7754 -10.5014 -2.8736 22 6 1.4888 -11.7731 -3.6388 23 6 0.4888 -12.4247 -3.1104 24 6 -0.0592 -11.6962 -1.9052 25 6 1.1963 -4.7884 0.6130 26 1 -0.4849 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 1.4299 -3.9357 -2.0723 29 1 3.1933 -3.6965 -1.8646 30 1 3.5467 -5.9180 -1.2443 31 1 2.0274 -6.1950 -2.1411 32 1 0.0893 -7.2560 0.6301 33 1 0.0119 -6.6823 -1.0530 34 1 2.2107 -8.4380 -0.8119 35 1 1.7132 -11.0985 -0.7691 36 1 1.3770 -9.6389 -3.4080 37 1 2.8475 -10.3875 -2.7130 38 1 2.0395 -12.0999 -4.5084 39 1 0.1035 -13.3613 -3.4854 40 1 -0.2338 -12.3943 -1.0866 41 1 -0.9806 -11.1744 -2.1635 42 1 1.2908 -4.7954 1.6988 43 1 0.1525 -4.6729 0.3208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086662744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:37 Heat of formation + Delta-G solvation = -49.180404 kcal Electronic energy + Delta-G solvation = -21189.783231 eV Core-core repulsion = 18040.439450 eV Total energy + Delta-G solvation = -3149.343780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28151 -39.63121 -38.43840 -36.32531 -34.99684 -32.64196 -31.04504 -29.88071 -29.08415 -28.62995 -25.91622 -24.80652 -23.15173 -21.46620 -20.83802 -20.39803 -19.66160 -19.16778 -18.30343 -17.25860 -17.10072 -16.75648 -16.48007 -15.87283 -15.68081 -15.36475 -14.96102 -14.30064 -14.04805 -13.79722 -13.60346 -13.50097 -13.28440 -13.02335 -12.98940 -12.69623 -12.63899 -12.40911 -12.19133 -12.08507 -12.04512 -11.93690 -11.77161 -11.64481 -11.50341 -11.24558 -10.90939 -10.83564 -10.09546 -9.78759 -8.98299 -7.94298 -5.22448 1.37918 1.46793 1.47632 1.57635 1.61460 2.18927 2.56567 3.38134 3.48352 3.63253 3.70067 3.77246 3.80842 3.98145 4.26793 4.30493 4.38019 4.41216 4.49621 4.61071 4.62886 4.66029 4.79275 4.79811 4.80593 4.84207 4.91466 4.94914 5.08703 5.09853 5.14053 5.20286 5.21296 5.38627 5.47858 5.50556 5.56992 5.63856 5.63979 6.00065 6.28710 6.57767 7.26333 7.33596 8.12405 8.33731 9.29807 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044714 B = 0.002708 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.053787 B =10337.237839 C =10560.172411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.057 0.943 12 C -0.140 4.140 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.104 0.896 16 C 0.132 3.868 17 N -0.710 5.710 18 C 0.516 3.484 19 O -0.590 6.590 20 C -0.111 4.111 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.173 4.173 24 C -0.094 4.094 25 C -0.118 4.118 26 H 0.250 0.750 27 H 0.370 0.630 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.418 0.582 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -26.483 -4.227 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.075 0.925 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.123 0.877 16 C 0.008 3.992 17 N -0.362 5.362 18 C 0.304 3.696 19 O -0.470 6.470 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.186 4.186 23 C -0.190 4.190 24 C -0.131 4.131 25 C -0.157 4.157 26 H 0.058 0.942 27 H 0.202 0.798 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.787 -26.254 -4.128 27.694 hybrid contribution -0.264 1.412 -0.082 1.439 sum 7.524 -24.841 -4.210 26.295 Atomic orbital electron populations 1.69834 1.06714 1.25879 1.59992 1.25592 0.96378 1.01217 1.04155 0.85078 0.78343 0.79865 0.76531 1.18775 1.22294 1.22162 1.19706 0.91473 0.85273 1.40314 0.90446 1.42645 1.05383 1.01250 1.88291 1.21476 0.94415 0.84477 0.94093 0.92467 1.22905 0.99961 0.96260 0.98902 1.22134 1.01447 0.94266 0.96601 1.21825 0.96609 0.93687 0.98082 0.87731 1.21328 0.95751 0.83259 0.98840 1.45889 1.11099 1.12130 1.67058 1.20987 0.86476 0.86149 0.76030 1.90694 1.17102 1.84124 1.55115 1.22224 0.99136 0.91755 1.00069 1.21386 1.01908 0.97184 0.92188 1.23453 0.98844 0.95740 1.00570 1.23420 0.97724 1.00308 0.97581 1.21296 0.97854 0.96419 0.97554 1.22509 0.99095 0.94001 1.00115 0.94153 0.79801 0.94452 0.93001 0.89314 0.91505 0.92377 0.93504 0.74493 0.84964 0.91426 0.87587 0.83732 0.84273 0.90164 0.91707 0.91234 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 2 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 3 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.14 9.96 84.04 0.84 -12.30 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.53 5.23 -316.89 -1.66 -39.18 16 10 C 0.16 6.26 3.56 46.27 0.16 6.43 16 11 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 12 C -0.14 -4.67 6.51 31.67 0.21 -4.46 16 13 C -0.11 -2.38 6.19 31.32 0.19 -2.18 16 14 C -0.08 -1.82 2.96 -10.07 -0.03 -1.85 16 15 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 16 C 0.13 3.08 4.69 86.38 0.41 3.48 16 17 N -0.71 -12.68 5.34 -463.05 -2.47 -15.15 16 18 C 0.52 11.36 7.06 87.66 0.62 11.98 16 19 O -0.59 -19.08 15.54 -3.04 -0.05 -19.13 16 20 C -0.11 -1.61 3.54 -10.42 -0.04 -1.65 16 21 C -0.09 -1.04 6.37 30.55 0.19 -0.85 16 22 C -0.17 -1.96 10.78 26.28 0.28 -1.67 16 23 C -0.17 -2.29 10.78 26.26 0.28 -2.01 16 24 C -0.09 -1.59 6.16 30.53 0.19 -1.40 16 25 C -0.12 -3.66 5.98 31.66 0.19 -3.47 16 26 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.37 20.55 7.76 -92.71 -0.72 19.83 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.42 7.62 -2.38 -0.02 1.40 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 4.53 8.35 -92.71 -0.77 3.75 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.00 7.88 -2.39 -0.02 0.98 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.50 7.01 -2.39 -0.02 1.48 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.78 7.73 -2.39 -0.02 1.76 16 Total: -1.00 -72.55 348.18 1.60 -70.95 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.50 Total: 28.67 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 3.96 Total: -14.24 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -3.84 Total: -114.79 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.55 1.60 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086662744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.765 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds