Wall clock time and date at job start Tue Mar 31 2020 00:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47213 * 299.99650 * 3 2 1 6 6 H 1.48498 * 109.47403 * 59.99804 * 3 2 1 7 7 C 1.38816 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99493 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99626 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.67057 * 36.78474 * 10 9 7 12 12 C 1.54888 * 110.75990 * 273.54834 * 10 9 7 13 13 C 1.54261 * 104.19672 * 203.55941 * 12 10 9 14 14 C 1.53876 * 106.59990 * 23.60631 * 13 12 10 15 15 H 1.08998 * 110.03319 * 240.71542 * 14 13 12 16 16 C 1.52999 * 110.03160 * 119.28578 * 14 13 12 17 17 N 1.46501 * 109.47137 * 66.45670 * 16 14 13 18 18 C 1.34779 * 119.99815 * 180.02562 * 17 16 14 19 19 O 1.21280 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99833 * 180.02562 * 18 17 16 21 21 H 1.09002 * 115.54623 * 325.66638 * 20 18 17 22 22 C 1.52997 * 117.50152 * 111.37394 * 20 18 17 23 23 C 1.52994 * 117.49677 * 179.97438 * 20 18 17 24 24 C 1.52999 * 138.58756 * 121.62121 * 23 20 18 25 25 C 1.52986 * 138.59237 * 23.40104 * 23 20 18 26 26 C 1.54267 * 106.59870 * 0.02562 * 14 13 12 27 27 H 0.97000 * 120.00587 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00686 * 359.97438 * 9 7 2 29 29 H 1.09000 * 110.48622 * 84.87723 * 12 10 9 30 30 H 1.09001 * 110.59737 * 322.29367 * 12 10 9 31 31 H 1.08998 * 110.03492 * 264.32506 * 13 12 10 32 32 H 1.08999 * 110.07717 * 142.91216 * 13 12 10 33 33 H 1.09000 * 109.47244 * 186.45674 * 16 14 13 34 34 H 1.09001 * 109.47161 * 306.45098 * 16 14 13 35 35 H 0.96992 * 120.00135 * 359.97438 * 17 16 14 36 36 H 1.08996 * 117.50017 * 214.97511 * 22 20 18 37 37 H 1.09007 * 117.49748 * 0.02562 * 22 20 18 38 38 H 1.08996 * 117.49638 * 336.58927 * 24 23 20 39 39 H 1.08991 * 117.49783 * 121.60868 * 24 23 20 40 40 H 1.08998 * 117.50032 * 238.38577 * 25 23 20 41 41 H 1.09003 * 117.49865 * 23.40556 * 25 23 20 42 42 H 1.09004 * 110.48597 * 95.06674 * 26 14 13 43 43 H 1.08994 * 110.48679 * 217.71200 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9579 -3.5815 0.6113 12 6 2.4103 -4.0874 -1.4450 13 6 2.5946 -5.6160 -1.3501 14 6 1.7973 -6.0793 -0.1182 15 1 2.4657 -6.5458 0.6053 16 6 0.7084 -7.0678 -0.5401 17 7 1.3310 -8.2969 -1.0379 18 6 0.5609 -9.3158 -1.4685 19 8 -0.6475 -9.2152 -1.4435 20 6 1.2013 -10.5804 -1.9801 21 1 2.1434 -10.4482 -2.5121 22 6 1.0371 -11.8465 -1.1370 23 6 0.2731 -11.7005 -2.4540 24 6 0.0098 -12.5124 -3.7238 25 6 -1.1560 -11.8630 -2.9754 26 6 1.1558 -4.8160 0.4921 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.3351 -3.6110 -1.7703 30 1 1.5960 -3.8429 -2.1271 31 1 3.6499 -5.8578 -1.2243 32 1 2.2063 -6.0961 -2.2483 33 1 0.0778 -7.3016 0.3177 34 1 0.0999 -6.6237 -1.3280 35 1 2.2973 -8.3772 -1.0583 36 1 1.8713 -12.5476 -1.1141 37 1 0.4654 -11.7649 -0.2124 38 1 0.3065 -12.0698 -4.6747 39 1 0.1091 -13.5958 -3.6580 40 1 -1.8238 -12.5192 -2.4173 41 1 -1.6263 -10.9932 -3.4340 42 1 0.1374 -4.6897 0.1246 43 1 1.1654 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086813095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:41 Heat of formation + Delta-G solvation = 17.768916 kcal Electronic energy + Delta-G solvation = -20957.181976 eV Core-core repulsion = 17810.741336 eV Total energy + Delta-G solvation = -3146.440640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17501 -38.45607 -37.47250 -34.86947 -33.39354 -32.85125 -30.72531 -29.05698 -27.36824 -25.14947 -23.35366 -22.96508 -22.66016 -20.77241 -19.90314 -19.46780 -19.07693 -17.28894 -17.01975 -16.24438 -15.64612 -15.31264 -15.18815 -14.95172 -14.54244 -14.23828 -13.80960 -13.36202 -12.90823 -12.80894 -12.70605 -12.18114 -11.95312 -11.85329 -11.74333 -11.13523 -10.87269 -10.79777 -10.58894 -10.56482 -10.51742 -10.40936 -10.30173 -10.26425 -10.12591 -9.93254 -9.73502 -9.63928 -9.09496 -8.87232 -6.93401 -5.75868 -3.04427 2.36539 2.91855 3.42980 3.43424 3.48854 3.51275 3.56389 3.98880 4.45704 4.52522 4.59384 4.76772 4.87152 4.93678 5.06248 5.14155 5.24216 5.33230 5.34614 5.37733 5.53154 5.55380 5.61793 5.67561 5.70051 5.74933 5.89561 5.91194 5.96920 6.03658 6.07349 6.23160 6.33466 6.40242 6.47271 6.57494 6.72683 6.87478 7.12491 7.43211 7.71743 8.16208 8.43061 9.53918 10.12991 10.47059 11.46918 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002583 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.298819 B =10839.434017 C =10986.249052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.127 3.873 17 N -0.724 5.724 18 C 0.537 3.463 19 O -0.535 6.535 20 C -0.142 4.142 21 H 0.123 0.877 22 C -0.101 4.101 23 C -0.203 4.203 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -25.397 -3.924 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.375 5.375 18 C 0.322 3.678 19 O -0.412 6.412 20 C -0.163 4.163 21 H 0.141 0.859 22 C -0.138 4.138 23 C -0.203 4.203 24 C -0.167 4.167 25 C -0.150 4.150 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.736 -25.135 -3.878 25.705 hybrid contribution 0.749 1.036 -0.098 1.282 sum 4.485 -24.099 -3.976 24.833 Atomic orbital electron populations 1.69667 1.05105 1.25537 1.57807 1.24755 0.95520 0.97719 1.03114 0.86130 0.78764 0.84207 0.77174 1.20581 1.21900 1.21894 1.19289 0.91014 0.84143 1.42438 0.91154 1.42394 1.05770 0.99794 1.88185 1.21158 0.93875 0.85582 0.92744 0.92958 1.23066 1.01294 0.92699 1.01352 1.22209 0.98937 0.97924 0.96774 1.21956 0.96417 0.95673 0.97900 0.90810 1.21564 0.95589 0.83274 0.99208 1.46009 1.10224 1.15993 1.65272 1.19673 0.87015 0.83714 0.77350 1.90708 1.14185 1.81561 1.54711 1.21987 1.00655 0.88749 1.04927 0.85869 1.22649 1.01192 0.96372 0.93567 1.21142 1.00121 1.01415 0.97633 1.22768 1.01922 0.98442 0.93583 1.22603 0.89151 1.02157 1.01082 1.22572 1.00115 0.93496 0.99860 0.93558 0.78198 0.92621 0.91837 0.92443 0.92416 0.91593 0.91190 0.76577 0.87599 0.88069 0.88514 0.88353 0.88523 0.88117 0.91195 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.11 5.26 -51.48 -0.27 -18.38 16 10 C 0.18 3.45 3.53 -65.92 -0.23 3.22 16 11 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 12 C -0.14 -2.50 6.51 -25.08 -0.16 -2.66 16 13 C -0.12 -1.56 6.13 -25.61 -0.16 -1.72 16 14 C -0.10 -1.25 2.98 -89.50 -0.27 -1.52 16 15 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.13 1.60 4.70 -4.04 -0.02 1.58 16 17 N -0.72 -7.70 5.29 -60.29 -0.32 -8.02 16 18 C 0.54 6.59 7.61 -10.98 -0.08 6.51 16 19 O -0.54 -8.76 16.24 5.56 0.09 -8.67 16 20 C -0.14 -1.30 6.19 -91.78 -0.57 -1.86 16 21 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 22 C -0.10 -0.79 10.23 -26.76 -0.27 -1.06 16 23 C -0.20 -1.89 5.05 -154.54 -0.78 -2.67 16 24 C -0.13 -0.97 10.53 -26.73 -0.28 -1.25 16 25 C -0.11 -1.06 10.16 -26.74 -0.27 -1.33 16 26 C -0.12 -1.94 5.97 -25.06 -0.15 -2.09 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.38 10.28 7.73 -40.82 -0.32 9.97 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.18 8.31 -40.82 -0.34 2.84 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -32.68 355.41 -10.27 -42.95 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.34 Total: 9.12 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.49 Total: -12.15 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.13 Total: -54.07 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.68 -10.27 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086813095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.722 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds