Wall clock time and date at job start Tue Mar 31 2020 00:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47213 * 299.99650 * 3 2 1 6 6 H 1.48498 * 109.47403 * 59.99804 * 3 2 1 7 7 C 1.38816 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99493 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99626 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.67057 * 36.78474 * 10 9 7 12 12 C 1.54888 * 110.75990 * 273.54834 * 10 9 7 13 13 C 1.54261 * 104.19672 * 203.55941 * 12 10 9 14 14 C 1.53876 * 106.59990 * 23.60631 * 13 12 10 15 15 H 1.08998 * 110.03319 * 240.71542 * 14 13 12 16 16 C 1.52999 * 110.03160 * 119.28578 * 14 13 12 17 17 N 1.46501 * 109.47137 * 66.45670 * 16 14 13 18 18 C 1.34779 * 119.99815 * 180.02562 * 17 16 14 19 19 O 1.21280 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99833 * 180.02562 * 18 17 16 21 21 H 1.09002 * 115.54623 * 325.66638 * 20 18 17 22 22 C 1.52997 * 117.50152 * 111.37394 * 20 18 17 23 23 C 1.52994 * 117.49677 * 179.97438 * 20 18 17 24 24 C 1.52999 * 138.58756 * 121.62121 * 23 20 18 25 25 C 1.52986 * 138.59237 * 23.40104 * 23 20 18 26 26 C 1.54267 * 106.59870 * 0.02562 * 14 13 12 27 27 H 0.97000 * 120.00587 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00686 * 359.97438 * 9 7 2 29 29 H 1.09000 * 110.48622 * 84.87723 * 12 10 9 30 30 H 1.09001 * 110.59737 * 322.29367 * 12 10 9 31 31 H 1.08998 * 110.03492 * 264.32506 * 13 12 10 32 32 H 1.08999 * 110.07717 * 142.91216 * 13 12 10 33 33 H 1.09000 * 109.47244 * 186.45674 * 16 14 13 34 34 H 1.09001 * 109.47161 * 306.45098 * 16 14 13 35 35 H 0.96992 * 120.00135 * 359.97438 * 17 16 14 36 36 H 1.08996 * 117.50017 * 214.97511 * 22 20 18 37 37 H 1.09007 * 117.49748 * 0.02562 * 22 20 18 38 38 H 1.08996 * 117.49638 * 336.58927 * 24 23 20 39 39 H 1.08991 * 117.49783 * 121.60868 * 24 23 20 40 40 H 1.08998 * 117.50032 * 238.38577 * 25 23 20 41 41 H 1.09003 * 117.49865 * 23.40556 * 25 23 20 42 42 H 1.09004 * 110.48597 * 95.06674 * 26 14 13 43 43 H 1.08994 * 110.48679 * 217.71200 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9579 -3.5815 0.6113 12 6 2.4103 -4.0874 -1.4450 13 6 2.5946 -5.6160 -1.3501 14 6 1.7973 -6.0793 -0.1182 15 1 2.4657 -6.5458 0.6053 16 6 0.7084 -7.0678 -0.5401 17 7 1.3310 -8.2969 -1.0379 18 6 0.5609 -9.3158 -1.4685 19 8 -0.6475 -9.2152 -1.4435 20 6 1.2013 -10.5804 -1.9801 21 1 2.1434 -10.4482 -2.5121 22 6 1.0371 -11.8465 -1.1370 23 6 0.2731 -11.7005 -2.4540 24 6 0.0098 -12.5124 -3.7238 25 6 -1.1560 -11.8630 -2.9754 26 6 1.1558 -4.8160 0.4921 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.3351 -3.6110 -1.7703 30 1 1.5960 -3.8429 -2.1271 31 1 3.6499 -5.8578 -1.2243 32 1 2.2063 -6.0961 -2.2483 33 1 0.0778 -7.3016 0.3177 34 1 0.0999 -6.6237 -1.3280 35 1 2.2973 -8.3772 -1.0583 36 1 1.8713 -12.5476 -1.1141 37 1 0.4654 -11.7649 -0.2124 38 1 0.3065 -12.0698 -4.6747 39 1 0.1091 -13.5958 -3.6580 40 1 -1.8238 -12.5192 -2.4173 41 1 -1.6263 -10.9932 -3.4340 42 1 0.1374 -4.6897 0.1246 43 1 1.1654 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086813095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:40 Heat of formation + Delta-G solvation = -2.882017 kcal Electronic energy + Delta-G solvation = -20958.077467 eV Core-core repulsion = 17810.741336 eV Total energy + Delta-G solvation = -3147.336132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09525 -39.61940 -38.36195 -36.29571 -34.97547 -33.58662 -32.52882 -30.33950 -28.86436 -26.40371 -25.05534 -24.04946 -23.28390 -21.73701 -21.10145 -20.70274 -19.98386 -19.13293 -18.06371 -17.29663 -16.76849 -16.66308 -16.13798 -15.87777 -15.66000 -15.55633 -15.15564 -14.99620 -14.32594 -14.09097 -13.60019 -13.48356 -13.34691 -12.98253 -12.69998 -12.64373 -12.36909 -12.36403 -12.09134 -11.98418 -11.78917 -11.65289 -11.53666 -11.26389 -11.17850 -11.08437 -10.93116 -10.91138 -10.72129 -10.08739 -8.98837 -7.94624 -5.22922 1.46369 1.47255 1.47884 1.57262 2.07171 2.56007 2.75176 2.87732 3.34355 3.37851 3.65186 3.73477 3.78910 3.83778 3.89417 4.12713 4.29278 4.38452 4.46672 4.50125 4.61460 4.62364 4.65039 4.75035 4.77325 4.78539 4.79227 4.82857 4.90883 5.01478 5.05785 5.08146 5.12145 5.19625 5.26750 5.37003 5.46489 5.49840 5.55418 5.63619 6.28339 6.59009 7.27577 7.33241 8.11874 8.33373 9.29462 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002583 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.298819 B =10839.434017 C =10986.249052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.105 0.895 16 C 0.134 3.866 17 N -0.709 5.709 18 C 0.530 3.470 19 O -0.585 6.585 20 C -0.145 4.145 21 H 0.153 0.847 22 C -0.084 4.084 23 C -0.230 4.230 24 C -0.105 4.105 25 C -0.137 4.137 26 C -0.116 4.116 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.418 0.582 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -27.627 -4.019 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.123 0.877 16 C 0.010 3.990 17 N -0.361 5.361 18 C 0.318 3.682 19 O -0.465 6.465 20 C -0.165 4.165 21 H 0.171 0.829 22 C -0.121 4.121 23 C -0.230 4.230 24 C -0.142 4.142 25 C -0.174 4.174 26 C -0.155 4.155 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.255 0.745 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.782 -27.411 -3.975 28.516 hybrid contribution -0.188 1.684 -0.063 1.696 sum 6.594 -25.727 -4.038 26.864 Atomic orbital electron populations 1.69831 1.06706 1.25888 1.59981 1.25594 0.96388 1.01221 1.04149 0.85074 0.78332 0.79852 0.76542 1.18795 1.22285 1.22132 1.19684 0.91462 0.85249 1.40316 0.90483 1.42636 1.05379 1.01233 1.88385 1.21475 0.94152 0.84514 0.94310 0.92732 1.22899 0.99931 0.96227 0.98920 1.22137 1.00976 0.94121 0.97274 1.21823 0.96271 0.93916 0.98143 0.87673 1.21311 0.95440 0.84057 0.98180 1.45836 1.11056 1.14844 1.64360 1.20328 0.86533 0.84789 0.76537 1.90693 1.16498 1.82572 1.56779 1.22052 1.01390 0.87253 1.05837 0.82945 1.22757 1.01374 0.95677 0.92272 1.21445 0.99824 1.02311 0.99467 1.22840 0.99058 0.99364 0.92915 1.22582 0.89985 1.02147 1.02723 1.22482 0.98759 0.93882 1.00418 0.94144 0.79791 0.93049 0.94496 0.89314 0.91608 0.92383 0.93609 0.74490 0.84464 0.89165 0.87919 0.86241 0.88185 0.90470 0.92945 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.72 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.17 9.98 84.03 0.84 -12.33 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.78 5.26 -316.80 -1.67 -39.44 16 10 C 0.16 6.33 3.53 46.29 0.16 6.49 16 11 H 0.05 2.09 8.12 -2.38 -0.02 2.07 16 12 C -0.14 -4.74 6.51 31.67 0.21 -4.54 16 13 C -0.11 -2.47 6.13 31.32 0.19 -2.28 16 14 C -0.08 -1.85 2.98 -10.07 -0.03 -1.88 16 15 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.13 3.23 4.70 86.38 0.41 3.63 16 17 N -0.71 -13.49 5.29 -463.05 -2.45 -15.94 16 18 C 0.53 12.42 7.61 87.66 0.67 13.09 16 19 O -0.59 -19.53 16.24 -3.03 -0.05 -19.58 16 20 C -0.14 -2.27 6.19 -11.54 -0.07 -2.35 16 21 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 22 C -0.08 -1.08 10.23 30.58 0.31 -0.76 16 23 C -0.23 -3.88 5.05 -52.20 -0.26 -4.15 16 24 C -0.11 -1.34 10.53 30.59 0.32 -1.01 16 25 C -0.14 -2.57 10.16 30.59 0.31 -2.26 16 26 C -0.12 -3.64 5.97 31.68 0.19 -3.45 16 27 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.37 20.64 7.73 -92.71 -0.72 19.92 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 5.00 8.31 -92.71 -0.77 4.23 16 36 H 0.14 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.82 7.74 -2.38 -0.02 1.80 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.70 355.41 1.37 -72.33 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.49 Total: 30.64 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 3.71 Total: -16.11 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.83 Total: -116.00 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.70 1.37 -72.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086813095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.447 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds