Wall clock time and date at job start Tue Mar 31 2020 00:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47314 * 269.99770 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.47136 * 149.99833 * 3 2 1 7 7 C 1.38820 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99706 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.67474 * 34.29691 * 10 9 7 12 12 C 1.54885 * 110.91190 * 270.95020 * 10 9 7 13 13 C 1.54269 * 104.19677 * 203.66950 * 12 10 9 14 14 C 1.53871 * 106.59813 * 23.61322 * 13 12 10 15 15 H 1.09001 * 110.07203 * 240.69406 * 14 13 12 16 16 C 1.52998 * 110.03662 * 119.28297 * 14 13 12 17 17 N 1.46501 * 109.46911 * 67.83085 * 16 14 13 18 18 C 1.34775 * 120.00090 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00370 * 179.97438 * 18 17 16 21 21 H 1.09005 * 115.54455 * 34.33151 * 20 18 17 22 22 C 1.52996 * 117.50063 * 248.61819 * 20 18 17 23 23 C 1.52986 * 59.99867 * 252.51033 * 22 20 18 24 24 C 1.52999 * 138.58577 * 130.89467 * 23 22 20 25 25 C 1.52993 * 138.58820 * 229.10341 * 23 22 20 26 26 C 1.54271 * 106.59748 * 359.97438 * 14 13 12 27 27 H 0.97005 * 120.00464 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00165 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48771 * 322.34786 * 12 10 9 30 30 H 1.08996 * 110.48854 * 84.99197 * 12 10 9 31 31 H 1.09000 * 110.03463 * 264.32671 * 13 12 10 32 32 H 1.08999 * 110.06955 * 142.91727 * 13 12 10 33 33 H 1.08995 * 109.47322 * 187.83050 * 16 14 13 34 34 H 1.08998 * 109.47023 * 307.83656 * 16 14 13 35 35 H 0.96998 * 120.00011 * 0.02562 * 17 16 14 36 36 H 1.08997 * 117.50201 * 0.02562 * 22 20 18 37 37 H 1.09004 * 117.49720 * 145.01642 * 22 20 18 38 38 H 1.08999 * 117.49782 * 238.38119 * 24 23 22 39 39 H 1.08998 * 117.49910 * 23.40479 * 24 23 22 40 40 H 1.09002 * 117.50315 * 336.59918 * 25 23 22 41 41 H 1.08995 * 117.50310 * 121.59893 * 25 23 22 42 42 H 1.09002 * 110.48367 * 217.71508 * 26 14 13 43 43 H 1.09003 * 110.48661 * 95.06928 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9800 -3.5689 0.5741 12 6 2.3552 -4.1236 -1.4472 13 6 2.5406 -5.6499 -1.3217 14 6 1.7891 -6.0809 -0.0500 15 1 2.4828 -6.5317 0.6598 16 6 0.6837 -7.0768 -0.4064 17 7 1.2859 -8.3309 -0.8657 18 6 0.4989 -9.3603 -1.2365 19 8 -0.7079 -9.2481 -1.1904 20 6 1.1182 -10.6501 -1.7095 21 1 2.0545 -10.9274 -1.2249 22 6 0.9514 -11.0142 -3.1861 23 6 0.1714 -11.7809 -2.1163 24 6 -1.2663 -12.2277 -1.8438 25 6 -0.1178 -13.2316 -1.7260 26 6 1.1738 -4.8013 0.5533 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 1.5148 -3.8940 -2.1024 30 1 3.2679 -3.6577 -1.8184 31 1 3.5996 -5.8911 -1.2294 32 1 2.1183 -6.1509 -2.1927 33 1 0.0703 -7.2693 0.4737 34 1 0.0617 -6.6609 -1.1990 35 1 2.2510 -8.4205 -0.9029 36 1 0.3940 -10.3206 -3.8156 37 1 1.7781 -11.5310 -3.6735 38 1 -1.7329 -11.8860 -0.9199 39 1 -1.9339 -12.3249 -2.6999 40 1 -0.0299 -13.9895 -2.5046 41 1 0.1715 -13.5507 -0.7248 42 1 1.2243 -4.8303 1.6417 43 1 0.1426 -4.6807 0.2212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086813096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:44 Heat of formation + Delta-G solvation = 17.732118 kcal Electronic energy + Delta-G solvation = -20957.298232 eV Core-core repulsion = 17810.855996 eV Total energy + Delta-G solvation = -3146.442236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17167 -38.45118 -37.47212 -34.86732 -33.39544 -32.85104 -30.72690 -29.05161 -27.36427 -25.14936 -23.35118 -22.95396 -22.66563 -20.77536 -19.88961 -19.47881 -19.06974 -17.30848 -17.03066 -16.20191 -15.71765 -15.30048 -15.07571 -14.93352 -14.65094 -14.23780 -13.79332 -13.33246 -12.87119 -12.85167 -12.68012 -12.18294 -11.95431 -11.84187 -11.75074 -11.14562 -10.86502 -10.79376 -10.58451 -10.55425 -10.51536 -10.42121 -10.29881 -10.25767 -10.14598 -9.93834 -9.74184 -9.63278 -9.09477 -8.86760 -6.93600 -5.75710 -3.04306 2.36859 2.91440 3.43220 3.43800 3.48747 3.50604 3.56679 3.99006 4.46128 4.52351 4.59505 4.77136 4.86340 4.94272 5.06555 5.14482 5.24749 5.32297 5.35629 5.37711 5.53263 5.55844 5.63045 5.67034 5.71032 5.75123 5.89895 5.90236 5.97245 6.03980 6.07675 6.23664 6.33905 6.40558 6.47544 6.57666 6.72706 6.87895 7.11949 7.43216 7.71196 8.16235 8.43188 9.53958 10.13050 10.47097 11.46971 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050302 B = 0.002575 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.502703 B =10869.532687 C =11066.088508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.054 0.946 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.127 3.873 17 N -0.724 5.724 18 C 0.537 3.463 19 O -0.535 6.535 20 C -0.142 4.142 21 H 0.123 0.877 22 C -0.100 4.100 23 C -0.203 4.203 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.122 4.122 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -25.383 -3.705 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.072 0.928 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.375 5.375 18 C 0.322 3.678 19 O -0.412 6.412 20 C -0.163 4.163 21 H 0.141 0.859 22 C -0.138 4.138 23 C -0.203 4.203 24 C -0.150 4.150 25 C -0.167 4.167 26 C -0.161 4.161 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.547 -25.106 -3.632 25.615 hybrid contribution 0.757 0.991 -0.035 1.248 sum 4.304 -24.115 -3.667 24.769 Atomic orbital electron populations 1.69658 1.05108 1.25654 1.57694 1.24755 0.95519 0.97717 1.03077 0.86199 0.78637 0.83911 0.77494 1.21755 1.21795 1.20784 1.19254 0.90983 0.84166 1.42613 0.91203 1.42388 1.05769 0.99787 1.88126 1.21148 0.94092 0.85594 0.92535 0.92822 1.23070 1.01306 0.92756 1.01336 1.22205 0.99139 0.97960 0.96489 1.21957 0.96456 0.95635 0.97918 0.90853 1.21567 0.95783 0.82563 0.99721 1.46012 1.10163 1.14069 1.67258 1.19676 0.86907 0.84015 0.77167 1.90710 1.14353 1.82642 1.53463 1.21982 1.00608 0.93301 1.00418 0.85908 1.22661 1.01088 1.00659 0.89342 1.21148 0.99680 0.95339 1.04149 1.22601 0.89180 0.99896 1.03315 1.22765 1.01986 0.89649 1.02321 1.22590 1.00315 0.93410 0.99814 0.93505 0.78189 0.91854 0.92595 0.92447 0.92390 0.91597 0.91188 0.76585 0.87999 0.87577 0.88158 0.88503 0.88352 0.88560 0.91756 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.64 9.97 -15.05 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -18.10 5.25 -51.51 -0.27 -18.37 16 10 C 0.18 3.45 3.54 -65.95 -0.23 3.22 16 11 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 12 C -0.14 -2.50 6.52 -25.07 -0.16 -2.66 16 13 C -0.12 -1.55 6.19 -25.61 -0.16 -1.71 16 14 C -0.10 -1.26 2.96 -89.50 -0.26 -1.52 16 15 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.13 1.60 4.69 -4.04 -0.02 1.58 16 17 N -0.72 -7.70 5.34 -60.30 -0.32 -8.02 16 18 C 0.54 6.59 7.61 -10.99 -0.08 6.51 16 19 O -0.54 -8.76 16.25 5.55 0.09 -8.67 16 20 C -0.14 -1.29 6.19 -91.78 -0.57 -1.86 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.10 -0.81 10.23 -26.74 -0.27 -1.09 16 23 C -0.20 -1.89 5.05 -154.53 -0.78 -2.67 16 24 C -0.11 -1.05 10.16 -26.73 -0.27 -1.32 16 25 C -0.13 -0.95 10.53 -26.73 -0.28 -1.23 16 26 C -0.12 -1.96 5.97 -25.08 -0.15 -2.10 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.28 7.74 -40.82 -0.32 9.97 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.72 7.61 -51.93 -0.40 0.33 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.17 8.35 -40.82 -0.34 2.83 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -32.63 355.55 -10.28 -42.91 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.34 Total: 9.19 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.49 Total: -12.18 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.13 Total: -54.04 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.63 -10.28 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086813096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.638 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds