Wall clock time and date at job start Tue Mar 31 2020 00:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47314 * 269.99770 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.47136 * 149.99833 * 3 2 1 7 7 C 1.38820 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99706 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.67474 * 34.29691 * 10 9 7 12 12 C 1.54885 * 110.91190 * 270.95020 * 10 9 7 13 13 C 1.54269 * 104.19677 * 203.66950 * 12 10 9 14 14 C 1.53871 * 106.59813 * 23.61322 * 13 12 10 15 15 H 1.09001 * 110.07203 * 240.69406 * 14 13 12 16 16 C 1.52998 * 110.03662 * 119.28297 * 14 13 12 17 17 N 1.46501 * 109.46911 * 67.83085 * 16 14 13 18 18 C 1.34775 * 120.00090 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00370 * 179.97438 * 18 17 16 21 21 H 1.09005 * 115.54455 * 34.33151 * 20 18 17 22 22 C 1.52996 * 117.50063 * 248.61819 * 20 18 17 23 23 C 1.52986 * 59.99867 * 252.51033 * 22 20 18 24 24 C 1.52999 * 138.58577 * 130.89467 * 23 22 20 25 25 C 1.52993 * 138.58820 * 229.10341 * 23 22 20 26 26 C 1.54271 * 106.59748 * 359.97438 * 14 13 12 27 27 H 0.97005 * 120.00464 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00165 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48771 * 322.34786 * 12 10 9 30 30 H 1.08996 * 110.48854 * 84.99197 * 12 10 9 31 31 H 1.09000 * 110.03463 * 264.32671 * 13 12 10 32 32 H 1.08999 * 110.06955 * 142.91727 * 13 12 10 33 33 H 1.08995 * 109.47322 * 187.83050 * 16 14 13 34 34 H 1.08998 * 109.47023 * 307.83656 * 16 14 13 35 35 H 0.96998 * 120.00011 * 0.02562 * 17 16 14 36 36 H 1.08997 * 117.50201 * 0.02562 * 22 20 18 37 37 H 1.09004 * 117.49720 * 145.01642 * 22 20 18 38 38 H 1.08999 * 117.49782 * 238.38119 * 24 23 22 39 39 H 1.08998 * 117.49910 * 23.40479 * 24 23 22 40 40 H 1.09002 * 117.50315 * 336.59918 * 25 23 22 41 41 H 1.08995 * 117.50310 * 121.59893 * 25 23 22 42 42 H 1.09002 * 110.48367 * 217.71508 * 26 14 13 43 43 H 1.09003 * 110.48661 * 95.06928 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9800 -3.5689 0.5741 12 6 2.3552 -4.1236 -1.4472 13 6 2.5406 -5.6499 -1.3217 14 6 1.7891 -6.0809 -0.0500 15 1 2.4828 -6.5317 0.6598 16 6 0.6837 -7.0768 -0.4064 17 7 1.2859 -8.3309 -0.8657 18 6 0.4989 -9.3603 -1.2365 19 8 -0.7079 -9.2481 -1.1904 20 6 1.1182 -10.6501 -1.7095 21 1 2.0545 -10.9274 -1.2249 22 6 0.9514 -11.0142 -3.1861 23 6 0.1714 -11.7809 -2.1163 24 6 -1.2663 -12.2277 -1.8438 25 6 -0.1178 -13.2316 -1.7260 26 6 1.1738 -4.8013 0.5533 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 1.5148 -3.8940 -2.1024 30 1 3.2679 -3.6577 -1.8184 31 1 3.5996 -5.8911 -1.2294 32 1 2.1183 -6.1509 -2.1927 33 1 0.0703 -7.2693 0.4737 34 1 0.0617 -6.6609 -1.1990 35 1 2.2510 -8.4205 -0.9029 36 1 0.3940 -10.3206 -3.8156 37 1 1.7781 -11.5310 -3.6735 38 1 -1.7329 -11.8860 -0.9199 39 1 -1.9339 -12.3249 -2.6999 40 1 -0.0299 -13.9895 -2.5046 41 1 0.1715 -13.5507 -0.7248 42 1 1.2243 -4.8303 1.6417 43 1 0.1426 -4.6807 0.2212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086813096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:43 Heat of formation + Delta-G solvation = -2.885969 kcal Electronic energy + Delta-G solvation = -20958.192299 eV Core-core repulsion = 17810.855996 eV Total energy + Delta-G solvation = -3147.336303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.09384 -39.61626 -38.36148 -36.29216 -34.97885 -33.58635 -32.53024 -30.33426 -28.86120 -26.40718 -25.04551 -24.04974 -23.28027 -21.74525 -21.09926 -20.69750 -19.98120 -19.14289 -18.08455 -17.26578 -16.79737 -16.64814 -16.09235 -15.86962 -15.68435 -15.50841 -15.30208 -14.91577 -14.30268 -14.05340 -13.61950 -13.50958 -13.32885 -12.96067 -12.69681 -12.64390 -12.37008 -12.35449 -12.14222 -11.98208 -11.78542 -11.65621 -11.52928 -11.26246 -11.17662 -11.08710 -10.93145 -10.89835 -10.72023 -10.08891 -8.98758 -7.94292 -5.22644 1.46434 1.47778 1.48388 1.56715 2.06630 2.56318 2.75159 2.88099 3.34396 3.37904 3.65319 3.73647 3.78986 3.84665 3.89128 4.12049 4.29366 4.38463 4.46753 4.51082 4.61493 4.62446 4.64991 4.75240 4.77488 4.79170 4.79443 4.82561 4.90830 5.01780 5.05064 5.08295 5.12525 5.20207 5.27009 5.37030 5.46746 5.49873 5.55782 5.63384 6.28405 6.58958 7.27511 7.33366 8.12076 8.33594 9.29542 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050302 B = 0.002575 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.502703 B =10869.532687 C =11066.088508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.056 0.944 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.083 4.083 15 H 0.104 0.896 16 C 0.134 3.866 17 N -0.709 5.709 18 C 0.530 3.470 19 O -0.585 6.585 20 C -0.142 4.142 21 H 0.155 0.845 22 C -0.088 4.088 23 C -0.229 4.229 24 C -0.138 4.138 25 C -0.103 4.103 26 C -0.117 4.117 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.418 0.582 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -27.569 -3.922 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.074 0.926 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.123 0.877 16 C 0.010 3.990 17 N -0.361 5.361 18 C 0.318 3.682 19 O -0.465 6.465 20 C -0.163 4.163 21 H 0.173 0.827 22 C -0.125 4.125 23 C -0.230 4.230 24 C -0.175 4.175 25 C -0.140 4.140 26 C -0.156 4.156 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.255 0.745 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.586 -27.340 -3.853 28.385 hybrid contribution -0.178 1.625 0.034 1.636 sum 6.408 -25.714 -3.818 26.774 Atomic orbital electron populations 1.69826 1.06709 1.25961 1.59876 1.25598 0.96388 1.01234 1.04100 0.85136 0.77764 0.79503 0.77362 1.21553 1.22384 1.19177 1.19663 0.91467 0.85274 1.40512 0.90478 1.42629 1.05371 1.01223 1.88360 1.21464 0.94278 0.84496 0.94216 0.92627 1.22903 0.99965 0.96225 0.98920 1.22132 1.01191 0.94204 0.96912 1.21822 0.96415 0.93787 0.98153 0.87747 1.21312 0.95601 0.83442 0.98632 1.45837 1.11008 1.12902 1.66341 1.20334 0.86410 0.85177 0.76291 1.90695 1.16665 1.83614 1.55574 1.22048 1.01459 0.91339 1.01442 0.82732 1.22753 1.01354 0.99862 0.88574 1.21444 0.99463 0.96783 1.05294 1.22590 0.89958 1.02324 1.02601 1.22844 0.98946 0.88819 1.03375 1.22493 0.98938 0.93938 1.00258 0.94141 0.79791 0.94449 0.92983 0.89336 0.91546 0.92502 0.93511 0.74480 0.89494 0.84511 0.90248 0.88382 0.86353 0.87658 0.91172 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 2 C -0.08 -4.75 5.50 84.87 0.47 -4.28 16 3 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.77 5.25 -316.88 -1.66 -39.43 16 10 C 0.16 6.33 3.54 46.27 0.16 6.50 16 11 H 0.06 2.13 8.11 -2.39 -0.02 2.11 16 12 C -0.14 -4.73 6.52 31.67 0.21 -4.53 16 13 C -0.11 -2.45 6.19 31.32 0.19 -2.26 16 14 C -0.08 -1.86 2.96 -10.07 -0.03 -1.89 16 15 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.13 3.23 4.69 86.38 0.40 3.64 16 17 N -0.71 -13.48 5.34 -463.07 -2.47 -15.95 16 18 C 0.53 12.41 7.61 87.66 0.67 13.08 16 19 O -0.59 -19.55 16.25 -3.05 -0.05 -19.60 16 20 C -0.14 -2.23 6.19 -11.55 -0.07 -2.30 16 21 H 0.16 1.41 8.14 -2.38 -0.02 1.39 16 22 C -0.09 -1.21 10.23 30.59 0.31 -0.90 16 23 C -0.23 -3.87 5.05 -52.19 -0.26 -4.14 16 24 C -0.14 -2.55 10.16 30.59 0.31 -2.24 16 25 C -0.10 -1.27 10.53 30.59 0.32 -0.94 16 26 C -0.12 -3.68 5.97 31.66 0.19 -3.49 16 27 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 28 H 0.37 20.65 7.74 -92.71 -0.72 19.93 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.47 7.61 -2.39 -0.02 1.45 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.42 4.98 8.35 -92.71 -0.77 4.20 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.14 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.82 7.73 -2.39 -0.02 1.80 16 Total: -1.00 -73.56 355.55 1.34 -72.22 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.49 Total: 30.86 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.71 Total: -16.21 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.85 Total: -115.95 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.56 1.34 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086813096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.336 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds