Wall clock time and date at job start Tue Mar 31 2020 00:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61516 * 254.13655 * 10 9 7 12 12 C 1.53957 * 87.01832 * 220.04845 * 11 10 9 13 13 C 1.53003 * 113.66490 * 139.93299 * 12 11 10 14 14 N 1.46506 * 109.47143 * 87.44112 * 13 12 11 15 15 C 1.34770 * 119.99961 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00123 * 179.97438 * 15 14 13 18 18 H 1.08995 * 109.64078 * 299.58077 * 17 15 14 19 19 C 1.53027 * 109.64187 * 59.99512 * 17 15 14 20 20 C 1.50067 * 110.14980 * 169.12215 * 19 17 15 21 21 C 1.29441 * 124.07144 * 342.86979 * 20 19 17 22 22 C 1.50066 * 124.08053 * 0.49159 * 21 20 19 23 23 C 1.53037 * 110.14021 * 342.83349 * 22 21 20 24 24 C 1.53773 * 87.11084 * 25.36533 * 12 11 10 25 25 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 27 27 H 1.09001 * 112.85020 * 25.33664 * 10 9 7 28 28 H 1.08997 * 113.61400 * 334.57016 * 11 10 9 29 29 H 1.09003 * 113.60964 * 105.47694 * 11 10 9 30 30 H 1.08999 * 113.61598 * 270.80262 * 12 11 10 31 31 H 1.09000 * 109.47167 * 207.43866 * 13 12 11 32 32 H 1.09005 * 109.47021 * 327.44206 * 13 12 11 33 33 H 0.96999 * 119.99530 * 359.97438 * 14 13 12 34 34 H 1.08996 * 109.35919 * 289.33385 * 19 17 15 35 35 H 1.09002 * 109.35951 * 49.05272 * 19 17 15 36 36 H 1.08003 * 117.96217 * 162.84978 * 20 19 17 37 37 H 1.08000 * 117.96048 * 180.46814 * 21 20 19 38 38 H 1.09009 * 109.35945 * 103.04949 * 22 21 20 39 39 H 1.08994 * 109.36327 * 222.77571 * 22 21 20 40 40 H 1.09002 * 109.65402 * 289.78185 * 23 22 21 41 41 H 1.08997 * 109.64191 * 169.13644 * 23 22 21 42 42 H 1.09010 * 113.61387 * 220.08995 * 24 12 11 43 43 H 1.08997 * 113.69780 * 89.19969 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.0327 -4.3828 -1.3548 12 6 1.8608 -5.6903 -0.5603 13 6 0.8720 -6.6697 -1.1960 14 7 1.5757 -7.5147 -2.1640 15 6 0.9010 -8.4575 -2.8512 16 8 -0.2885 -8.6067 -2.6680 17 6 1.6247 -9.3264 -3.8474 18 1 2.0605 -8.7034 -4.6284 19 6 2.7309 -10.1106 -3.1380 20 6 3.2820 -11.1671 -4.0501 21 6 2.6828 -11.5882 -5.1175 22 6 1.3584 -11.0712 -5.5978 23 6 0.6421 -10.3273 -4.4683 24 6 1.2469 -4.8365 0.5617 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 3.0560 -3.5693 0.4304 28 1 1.1694 -4.1289 -1.9700 29 1 2.9747 -4.3228 -1.9000 30 1 2.8045 -6.1608 -0.2844 31 1 0.4311 -7.2957 -0.4202 32 1 0.0850 -6.1127 -1.7044 33 1 2.5270 -7.3952 -2.3107 34 1 3.5306 -9.4279 -2.8511 35 1 2.3225 -10.5841 -2.2452 36 1 4.2381 -11.6031 -3.8006 37 1 3.1663 -12.3593 -5.6988 38 1 1.5179 -10.3909 -6.4345 39 1 0.7410 -11.9077 -5.9249 40 1 0.3158 -11.0389 -3.7098 41 1 -0.2195 -9.7939 -4.8696 42 1 1.5554 -5.1422 1.5615 43 1 0.1684 -4.7062 0.4729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090923685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:09 Heat of formation + Delta-G solvation = -10.960706 kcal Electronic energy + Delta-G solvation = -21050.652350 eV Core-core repulsion = 17902.965900 eV Total energy + Delta-G solvation = -3147.686450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37079 -38.79384 -37.74138 -34.81899 -33.60981 -31.71599 -31.11718 -29.99682 -27.28613 -25.19331 -24.24287 -23.62348 -22.91381 -21.21869 -20.42397 -19.09750 -18.27143 -17.55975 -17.19885 -16.25474 -15.84687 -15.39834 -15.01735 -14.59608 -14.29896 -14.05047 -13.76633 -13.65854 -13.45306 -13.33055 -13.13420 -12.57362 -12.49623 -11.99874 -11.92543 -11.55397 -11.31247 -11.10840 -10.97976 -10.76523 -10.69027 -10.40162 -10.30547 -9.99925 -9.89872 -9.70683 -9.36725 -9.13884 -9.05050 -8.88260 -7.04960 -6.12335 -3.12296 1.92341 2.56059 3.11118 3.50458 3.53986 3.71694 4.26790 4.32081 4.52735 4.65670 4.82305 4.86150 4.89885 4.95034 4.97883 5.09421 5.14858 5.19664 5.29182 5.41823 5.47343 5.50089 5.57700 5.60159 5.75772 5.77862 5.85761 5.89525 5.92199 5.99028 6.18743 6.21015 6.25892 6.27842 6.40606 6.50712 6.56981 6.71983 7.01598 7.43631 7.78969 8.15690 8.73496 9.20588 10.06967 10.22065 11.35851 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.002627 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.679719 B =10655.549104 C =10744.993505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.171 3.829 11 C -0.160 4.160 12 C -0.126 4.126 13 C 0.131 3.869 14 N -0.725 5.725 15 C 0.514 3.486 16 O -0.542 6.542 17 C -0.108 4.108 18 H 0.099 0.901 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.094 4.094 23 C -0.100 4.100 24 C -0.143 4.143 25 H 0.255 0.745 26 H 0.368 0.632 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -23.436 -8.231 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.364 5.364 10 C 0.059 3.941 11 C -0.202 4.202 12 C -0.145 4.145 13 C 0.008 3.992 14 N -0.376 5.376 15 C 0.300 3.700 16 O -0.419 6.419 17 C -0.130 4.130 18 H 0.117 0.883 19 C -0.119 4.119 20 C -0.174 4.174 21 C -0.172 4.172 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.183 4.183 25 H 0.066 0.934 26 H 0.202 0.798 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.424 -21.794 -8.063 24.109 hybrid contribution 0.531 -1.724 -0.131 1.809 sum 6.955 -23.518 -8.193 25.858 Atomic orbital electron populations 1.70884 1.06059 1.28481 1.53354 1.25807 0.97058 1.01110 1.00326 0.83242 0.74226 0.75595 0.75850 1.21009 1.22257 1.22230 1.20091 0.92044 0.85909 1.48621 0.91706 1.42421 1.04780 1.00892 1.88337 1.21459 0.95202 0.84550 0.92872 1.23963 1.01282 0.94851 1.00058 1.22657 0.98498 0.94478 0.98879 1.21422 0.94990 0.91859 0.90907 1.46086 1.12853 1.36270 1.42369 1.20608 0.87562 0.80411 0.81421 1.90701 1.15353 1.69630 1.66220 1.21417 0.97165 0.96863 0.97521 0.88285 1.20418 0.96848 0.96551 0.98047 1.21981 0.99980 0.98767 0.96637 1.22104 0.97107 1.00214 0.97800 1.20519 0.94249 1.00024 0.98281 1.21425 0.97253 0.97301 0.97763 1.23434 1.00759 0.97198 0.96912 0.93351 0.79817 0.90643 0.90512 0.92671 0.89307 0.91791 0.91352 0.76623 0.90427 0.90320 0.87588 0.87872 0.90661 0.90663 0.91134 0.90561 0.91903 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.35 13.70 55.49 0.76 -28.59 16 2 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.08 25.91 29.92 -169.99 -5.09 20.83 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.34 -9.44 9.97 -15.06 -0.15 -9.59 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -18.16 5.41 -52.64 -0.28 -18.44 16 10 C 0.17 3.33 4.47 -67.12 -0.30 3.03 16 11 C -0.16 -2.66 7.45 -25.83 -0.19 -2.85 16 12 C -0.13 -1.66 3.75 -89.72 -0.34 -2.00 16 13 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 14 N -0.72 -8.00 5.46 -60.29 -0.33 -8.33 16 15 C 0.51 6.30 7.14 -10.99 -0.08 6.22 16 16 O -0.54 -8.89 15.90 5.56 0.09 -8.80 16 17 C -0.11 -0.97 2.58 -91.56 -0.24 -1.21 16 18 H 0.10 0.79 8.13 -51.93 -0.42 0.37 16 19 C -0.08 -0.60 5.27 -28.17 -0.15 -0.75 16 20 C -0.16 -1.08 9.80 -35.90 -0.35 -1.43 16 21 C -0.15 -1.06 9.80 -35.90 -0.35 -1.42 16 22 C -0.09 -0.66 6.12 -28.17 -0.17 -0.83 16 23 C -0.10 -0.91 4.70 -26.51 -0.12 -1.03 16 24 C -0.14 -2.27 7.39 -25.92 -0.19 -2.46 16 25 H 0.26 7.83 6.77 -40.82 -0.28 7.55 16 26 H 0.37 9.55 6.74 -40.82 -0.28 9.28 16 27 H 0.08 1.48 8.11 -51.93 -0.42 1.05 16 28 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 33 H 0.40 3.41 8.14 -40.82 -0.33 3.08 16 34 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.10 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -33.24 347.67 -9.58 -42.82 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.22 Total: 9.32 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.75 Total: -14.04 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.15 Total: -55.36 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.09 Total: 20.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.24 -9.58 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090923685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.862 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds