Wall clock time and date at job start Tue Mar 31 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61516 * 254.13655 * 10 9 7 12 12 C 1.53957 * 87.01832 * 220.04845 * 11 10 9 13 13 C 1.53003 * 113.66490 * 139.93299 * 12 11 10 14 14 N 1.46506 * 109.47143 * 87.44112 * 13 12 11 15 15 C 1.34770 * 119.99961 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00123 * 179.97438 * 15 14 13 18 18 H 1.08995 * 109.64078 * 299.58077 * 17 15 14 19 19 C 1.53027 * 109.64187 * 59.99512 * 17 15 14 20 20 C 1.50067 * 110.14980 * 169.12215 * 19 17 15 21 21 C 1.29441 * 124.07144 * 342.86979 * 20 19 17 22 22 C 1.50066 * 124.08053 * 0.49159 * 21 20 19 23 23 C 1.53037 * 110.14021 * 342.83349 * 22 21 20 24 24 C 1.53773 * 87.11084 * 25.36533 * 12 11 10 25 25 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 27 27 H 1.09001 * 112.85020 * 25.33664 * 10 9 7 28 28 H 1.08997 * 113.61400 * 334.57016 * 11 10 9 29 29 H 1.09003 * 113.60964 * 105.47694 * 11 10 9 30 30 H 1.08999 * 113.61598 * 270.80262 * 12 11 10 31 31 H 1.09000 * 109.47167 * 207.43866 * 13 12 11 32 32 H 1.09005 * 109.47021 * 327.44206 * 13 12 11 33 33 H 0.96999 * 119.99530 * 359.97438 * 14 13 12 34 34 H 1.08996 * 109.35919 * 289.33385 * 19 17 15 35 35 H 1.09002 * 109.35951 * 49.05272 * 19 17 15 36 36 H 1.08003 * 117.96217 * 162.84978 * 20 19 17 37 37 H 1.08000 * 117.96048 * 180.46814 * 21 20 19 38 38 H 1.09009 * 109.35945 * 103.04949 * 22 21 20 39 39 H 1.08994 * 109.36327 * 222.77571 * 22 21 20 40 40 H 1.09002 * 109.65402 * 289.78185 * 23 22 21 41 41 H 1.08997 * 109.64191 * 169.13644 * 23 22 21 42 42 H 1.09010 * 113.61387 * 220.08995 * 24 12 11 43 43 H 1.08997 * 113.69780 * 89.19969 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.0327 -4.3828 -1.3548 12 6 1.8608 -5.6903 -0.5603 13 6 0.8720 -6.6697 -1.1960 14 7 1.5757 -7.5147 -2.1640 15 6 0.9010 -8.4575 -2.8512 16 8 -0.2885 -8.6067 -2.6680 17 6 1.6247 -9.3264 -3.8474 18 1 2.0605 -8.7034 -4.6284 19 6 2.7309 -10.1106 -3.1380 20 6 3.2820 -11.1671 -4.0501 21 6 2.6828 -11.5882 -5.1175 22 6 1.3584 -11.0712 -5.5978 23 6 0.6421 -10.3273 -4.4683 24 6 1.2469 -4.8365 0.5617 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 3.0560 -3.5693 0.4304 28 1 1.1694 -4.1289 -1.9700 29 1 2.9747 -4.3228 -1.9000 30 1 2.8045 -6.1608 -0.2844 31 1 0.4311 -7.2957 -0.4202 32 1 0.0850 -6.1127 -1.7044 33 1 2.5270 -7.3952 -2.3107 34 1 3.5306 -9.4279 -2.8511 35 1 2.3225 -10.5841 -2.2452 36 1 4.2381 -11.6031 -3.8006 37 1 3.1663 -12.3593 -5.6988 38 1 1.5179 -10.3909 -6.4345 39 1 0.7410 -11.9077 -5.9249 40 1 0.3158 -11.0389 -3.7098 41 1 -0.2195 -9.7939 -4.8696 42 1 1.5554 -5.1422 1.5615 43 1 0.1684 -4.7062 0.4729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090923685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:08 Heat of formation + Delta-G solvation = -32.239396 kcal Electronic energy + Delta-G solvation = -21051.575063 eV Core-core repulsion = 17902.965900 eV Total energy + Delta-G solvation = -3148.609163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31322 -40.07644 -38.55306 -36.30749 -35.23301 -32.53299 -31.88434 -31.59585 -28.55892 -26.56476 -25.77663 -24.76263 -23.73691 -22.56263 -21.43539 -20.44428 -19.37037 -18.87006 -18.27988 -17.28146 -16.82746 -16.62394 -16.37535 -15.87168 -15.58387 -15.28271 -15.12810 -14.67178 -14.55230 -14.24040 -13.92003 -13.48919 -13.35179 -13.29140 -13.14582 -13.04063 -12.63921 -12.54216 -12.10814 -11.99932 -11.83676 -11.74415 -11.66475 -11.41169 -11.32137 -11.05529 -10.84741 -10.67439 -10.11012 -9.86949 -9.10025 -8.40110 -5.33719 1.42583 1.57930 1.59667 1.68229 1.84368 2.16788 2.72041 3.37471 3.53025 3.61388 3.65467 3.71016 3.79786 3.87325 4.09223 4.20097 4.25266 4.28407 4.33406 4.39869 4.46298 4.48485 4.60430 4.70615 4.72896 4.87185 4.87725 4.91202 4.96504 5.03712 5.04953 5.13087 5.24464 5.28212 5.31744 5.40819 5.58968 5.64611 5.77882 6.06673 6.47864 6.53847 7.08975 7.22767 7.99348 8.12322 9.11647 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.002627 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.679719 B =10655.549104 C =10744.993505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.129 2.871 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.070 0.930 9 N -0.743 5.743 10 C 0.147 3.853 11 C -0.153 4.153 12 C -0.092 4.092 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.511 3.489 16 O -0.590 6.590 17 C -0.101 4.101 18 H 0.115 0.885 19 C -0.079 4.079 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.101 4.101 24 C -0.138 4.138 25 H 0.242 0.758 26 H 0.358 0.642 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.416 0.584 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -24.877 -8.660 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.301 4.301 3 Si 0.953 3.047 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.463 4.463 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.038 3.962 11 C -0.194 4.194 12 C -0.111 4.111 13 C 0.013 3.987 14 N -0.364 5.364 15 C 0.299 3.701 16 O -0.470 6.470 17 C -0.122 4.122 18 H 0.133 0.867 19 C -0.116 4.116 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.177 4.177 25 H 0.053 0.947 26 H 0.190 0.810 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.340 -23.300 -8.498 26.502 hybrid contribution -0.349 -1.360 0.005 1.404 sum 8.991 -24.660 -8.493 27.588 Atomic orbital electron populations 1.70998 1.07306 1.27806 1.56531 1.27263 0.97115 1.04920 1.00755 0.82623 0.73359 0.71479 0.77240 1.22150 1.20291 1.20143 1.20474 0.92481 0.87134 1.46237 0.91181 1.42663 1.04537 1.02129 1.88949 1.21908 0.95484 0.83473 0.95369 1.23742 1.01009 0.96157 0.98469 1.22485 0.99529 0.92930 0.96170 1.21192 0.94542 0.91816 0.91105 1.45947 1.13550 1.35404 1.41529 1.21236 0.87094 0.80360 0.81421 1.90684 1.17578 1.70977 1.67753 1.21427 0.97289 0.96553 0.96978 0.86746 1.20435 0.96587 0.96913 0.97662 1.22104 1.00632 0.98629 0.96477 1.22247 0.96822 1.00580 0.98204 1.20508 0.94496 1.00214 0.97544 1.21401 0.97132 0.97159 0.98185 1.23323 0.99667 0.95931 0.98778 0.94716 0.81013 0.90338 0.92873 0.91259 0.85764 0.91745 0.93893 0.74701 0.88399 0.91109 0.86041 0.86434 0.89898 0.89906 0.92520 0.92331 0.90151 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.45 13.70 21.65 0.30 -62.15 16 2 C -0.11 -6.45 5.50 84.86 0.47 -5.99 16 3 Si 1.13 52.11 29.92 68.60 2.05 54.17 16 4 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.33 -18.70 9.97 84.03 0.84 -17.86 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.72 5.41 -320.45 -1.73 -39.46 16 10 C 0.15 5.59 4.47 45.52 0.20 5.79 16 11 C -0.15 -4.86 7.45 31.18 0.23 -4.63 16 12 C -0.09 -2.20 3.75 -10.21 -0.04 -2.24 16 13 C 0.14 3.42 5.51 86.38 0.48 3.90 16 14 N -0.71 -14.31 5.46 -463.05 -2.53 -16.84 16 15 C 0.51 12.08 7.14 87.66 0.63 12.70 16 16 O -0.59 -19.65 15.90 -3.02 -0.05 -19.70 16 17 C -0.10 -1.65 2.58 -11.40 -0.03 -1.68 16 18 H 0.11 1.54 8.13 -2.39 -0.02 1.53 16 19 C -0.08 -0.95 5.27 29.66 0.16 -0.80 16 20 C -0.16 -1.77 9.80 27.04 0.27 -1.51 16 21 C -0.16 -1.81 9.80 27.04 0.27 -1.55 16 22 C -0.09 -1.13 6.12 29.66 0.18 -0.95 16 23 C -0.10 -1.79 4.70 30.74 0.14 -1.65 16 24 C -0.14 -4.18 7.39 31.12 0.23 -3.95 16 25 H 0.24 15.49 6.77 -92.71 -0.63 14.86 16 26 H 0.36 19.27 6.74 -92.71 -0.62 18.65 16 27 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 28 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.31 7.85 -2.38 -0.02 1.29 16 33 H 0.42 5.66 8.14 -92.71 -0.75 4.91 16 34 H 0.10 0.79 7.89 -2.39 -0.02 0.77 16 35 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 41 H 0.06 1.23 7.89 -2.39 -0.02 1.21 16 42 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 43 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 Total: -1.00 -73.87 347.67 1.81 -72.06 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.25 Total: 32.33 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.02 Total: -20.42 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -3.97 Total: -118.45 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.17 kcal Total: -73.87 1.81 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090923685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.823 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds