Wall clock time and date at job start Tue Mar 31 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99802 * 2 1 4 4 H 1.48508 * 109.47533 * 269.99836 * 3 2 1 5 5 H 1.48503 * 109.47564 * 30.00122 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00059 * 3 2 1 7 7 C 1.38808 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99643 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99956 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99733 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.60979 * 204.99698 * 10 9 7 12 12 C 1.53781 * 87.07987 * 270.88306 * 11 10 9 13 13 C 1.52995 * 113.61293 * 219.93573 * 12 11 10 14 14 N 1.46500 * 109.47108 * 183.47228 * 13 12 11 15 15 C 1.34783 * 120.00119 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99624 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.52996 * 119.30014 * 250.95180 * 17 15 14 19 19 C 1.53872 * 121.33023 * 179.11771 * 17 15 14 20 20 H 1.09011 * 121.33027 * 359.43605 * 19 17 15 21 21 C 1.54267 * 106.60145 * 221.93820 * 19 17 15 22 22 C 1.54886 * 104.19325 * 23.60994 * 21 19 17 23 23 C 1.54265 * 117.41377 * 45.29547 * 17 15 14 24 24 C 1.53779 * 113.61484 * 107.50045 * 10 9 7 25 25 H 0.96997 * 119.99554 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00314 * 359.97438 * 9 7 2 27 27 H 1.08994 * 112.90940 * 336.24875 * 10 9 7 28 28 H 1.09005 * 113.61051 * 156.33710 * 11 10 9 29 29 H 1.08996 * 113.69311 * 25.44339 * 11 10 9 30 30 H 1.09002 * 113.61228 * 89.11929 * 12 11 10 31 31 H 1.09005 * 109.47501 * 303.47224 * 13 12 11 32 32 H 1.09004 * 109.47494 * 63.47236 * 13 12 11 33 33 H 0.96997 * 120.00462 * 0.02562 * 14 13 12 34 34 H 1.09001 * 117.46404 * 356.29420 * 18 17 15 35 35 H 1.09004 * 117.46280 * 141.09772 * 18 17 15 36 36 H 1.09001 * 110.48841 * 264.93439 * 21 19 17 37 37 H 1.09001 * 110.60097 * 142.34012 * 21 19 17 38 38 H 1.08998 * 110.75738 * 203.74302 * 22 21 19 39 39 H 1.09005 * 110.91722 * 80.44370 * 22 21 19 40 40 H 1.08993 * 110.48907 * 235.04790 * 23 17 15 41 41 H 1.09000 * 110.48638 * 357.56203 * 23 17 15 42 42 H 1.09003 * 113.61775 * 334.57164 * 24 10 9 43 43 H 1.08996 * 113.61960 * 203.65890 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 -0.0011 11 6 5.5259 -2.3664 0.5950 12 6 6.0130 -2.0227 -0.8226 13 6 7.3484 -2.6745 -1.1866 14 7 7.7659 -2.2229 -2.5162 15 6 8.9212 -2.6694 -3.0477 16 8 9.6150 -3.4455 -2.4253 17 6 9.3504 -2.2053 -4.4157 18 6 9.3082 -3.1883 -5.5873 19 6 10.6728 -2.6798 -5.0432 20 1 11.3410 -3.3579 -4.5122 21 6 11.3119 -1.4446 -5.7109 22 6 10.6940 -0.2421 -4.9553 23 6 9.2320 -0.6984 -4.7239 24 6 4.7876 -2.7910 -1.3450 25 1 -0.4849 0.8401 -0.0004 26 1 3.8647 -0.3621 0.0004 27 1 3.5283 -3.2982 0.4021 28 1 5.9120 -3.3137 0.9716 29 1 5.6419 -1.5491 1.3067 30 1 5.9877 -0.9562 -1.0463 31 1 8.1032 -2.3910 -0.4530 32 1 7.2346 -3.7586 -1.1902 33 1 7.2113 -1.6019 -3.0139 34 1 9.0229 -4.2176 -5.3698 35 1 8.9812 -2.8048 -6.5538 36 1 11.0516 -1.4052 -6.7686 37 1 12.3946 -1.4582 -5.5857 38 1 10.7252 0.6576 -5.5698 39 1 11.2020 -0.0768 -4.0051 40 1 8.6358 -0.5384 -5.6222 41 1 8.7946 -0.1690 -3.8775 42 1 4.3063 -2.3158 -2.1999 43 1 4.9719 -3.8542 -1.4988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091151141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:06 Heat of formation + Delta-G solvation = 13.755648 kcal Electronic energy + Delta-G solvation = -21412.575941 eV Core-core repulsion = 18265.961272 eV Total energy + Delta-G solvation = -3146.614668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67391 -39.06743 -37.99774 -34.76268 -33.24948 -31.91504 -30.74563 -29.11605 -27.38491 -25.20288 -23.98155 -23.16906 -22.28022 -21.65747 -20.64401 -19.48586 -18.45687 -17.70311 -17.30174 -16.12315 -15.67144 -15.21701 -15.04175 -14.63722 -14.41991 -13.77235 -13.60171 -13.54249 -13.42904 -13.32768 -12.78957 -12.51910 -12.10527 -12.03212 -11.60929 -11.49211 -11.43323 -11.38263 -11.28135 -10.95211 -10.64639 -10.54723 -10.33162 -10.11014 -10.02143 -9.79834 -9.66650 -9.51135 -9.06160 -8.94330 -7.33821 -5.82944 -3.19258 2.42296 3.05394 3.31885 3.32783 3.34280 3.40424 4.08225 4.27011 4.42364 4.52808 4.62435 4.85858 4.89835 4.92683 4.99707 5.06060 5.10475 5.21692 5.32364 5.35848 5.40281 5.41578 5.48648 5.49658 5.58266 5.69901 5.72747 5.74029 5.84453 5.86399 5.90661 6.03015 6.10058 6.21068 6.34696 6.46889 6.59598 6.71701 6.86264 7.46780 7.94946 8.16987 8.36842 9.14459 9.86659 10.05925 11.35207 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003446 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.424208 B = 8123.028161 C = 8751.143965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.123 4.123 13 C 0.131 3.869 14 N -0.720 5.720 15 C 0.553 3.447 16 O -0.546 6.546 17 C -0.177 4.177 18 C -0.122 4.122 19 C -0.130 4.130 20 H 0.119 0.881 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.166 4.166 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.687 -2.842 -11.123 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.188 4.188 12 C -0.142 4.142 13 C 0.008 3.992 14 N -0.370 5.370 15 C 0.339 3.661 16 O -0.424 6.424 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.148 4.148 20 H 0.137 0.863 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.126 4.126 24 C -0.207 4.207 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.884 -3.433 -10.614 24.564 hybrid contribution 0.232 1.566 -0.163 1.592 sum 22.117 -1.867 -10.777 24.673 Atomic orbital electron populations 1.69700 1.05099 1.25910 1.57213 1.24682 0.95252 0.97215 1.01889 0.86566 0.79247 0.85030 0.77779 1.21043 1.21614 1.20337 1.19117 0.80405 0.94857 1.43289 0.89012 1.42515 1.03959 1.01614 1.88921 1.21001 0.90092 0.89896 0.92901 1.23464 0.98784 1.01586 0.95006 1.22749 0.92680 1.00032 0.98742 1.21470 0.95826 0.99106 0.82823 1.45994 1.22727 1.48621 1.19668 1.19352 0.80640 0.80223 0.85847 1.90683 1.53995 1.35471 1.62267 1.22430 1.06308 0.96010 0.93296 1.23479 0.98479 0.98248 0.95757 1.23744 0.89024 1.00154 1.01909 0.86260 1.21995 0.99969 0.92265 0.99191 1.22676 0.94927 0.97803 1.00641 1.21965 0.97617 0.90864 1.02201 1.23853 0.96456 0.98850 1.01539 0.92964 0.80523 0.91066 0.90002 0.91431 0.89280 0.91853 0.91445 0.76309 0.87848 0.87924 0.91031 0.90880 0.90917 0.91165 0.90470 0.90831 0.91295 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.83 10.45 -15.06 -0.16 -6.99 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.73 -16.73 5.11 -52.63 -0.27 -17.00 16 10 C 0.17 3.19 4.56 -67.11 -0.31 2.88 16 11 C -0.15 -2.21 7.39 -25.92 -0.19 -2.41 16 12 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 13 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 14 N -0.72 -8.62 5.38 -60.29 -0.32 -8.94 16 15 C 0.55 7.27 7.41 -10.98 -0.08 7.19 16 16 O -0.55 -9.16 16.79 5.56 0.09 -9.07 16 17 C -0.18 -1.77 2.60 -154.55 -0.40 -2.17 16 18 C -0.12 -1.04 10.00 -25.42 -0.25 -1.30 16 19 C -0.13 -1.18 6.64 -88.19 -0.59 -1.77 16 20 H 0.12 1.22 8.14 -51.92 -0.42 0.80 16 21 C -0.10 -0.68 6.64 -25.07 -0.17 -0.85 16 22 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 23 C -0.09 -0.72 6.18 -25.07 -0.16 -0.88 16 24 C -0.17 -2.59 7.43 -25.92 -0.19 -2.79 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.36 8.12 5.76 -40.82 -0.24 7.88 16 27 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 33 H 0.40 4.18 7.98 -40.82 -0.33 3.85 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -32.32 347.99 -9.58 -41.91 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.28 Total: 9.53 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.11 Total: -10.45 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.18 Total: -54.06 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.32 -9.58 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091151141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.661 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds