Wall clock time and date at job start Tue Mar 31 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99802 * 2 1 4 4 H 1.48508 * 109.47533 * 269.99836 * 3 2 1 5 5 H 1.48503 * 109.47564 * 30.00122 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00059 * 3 2 1 7 7 C 1.38808 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99643 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99956 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99733 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.60979 * 204.99698 * 10 9 7 12 12 C 1.53781 * 87.07987 * 270.88306 * 11 10 9 13 13 C 1.52995 * 113.61293 * 219.93573 * 12 11 10 14 14 N 1.46500 * 109.47108 * 183.47228 * 13 12 11 15 15 C 1.34783 * 120.00119 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99624 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.52996 * 119.30014 * 250.95180 * 17 15 14 19 19 C 1.53872 * 121.33023 * 179.11771 * 17 15 14 20 20 H 1.09011 * 121.33027 * 359.43605 * 19 17 15 21 21 C 1.54267 * 106.60145 * 221.93820 * 19 17 15 22 22 C 1.54886 * 104.19325 * 23.60994 * 21 19 17 23 23 C 1.54265 * 117.41377 * 45.29547 * 17 15 14 24 24 C 1.53779 * 113.61484 * 107.50045 * 10 9 7 25 25 H 0.96997 * 119.99554 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00314 * 359.97438 * 9 7 2 27 27 H 1.08994 * 112.90940 * 336.24875 * 10 9 7 28 28 H 1.09005 * 113.61051 * 156.33710 * 11 10 9 29 29 H 1.08996 * 113.69311 * 25.44339 * 11 10 9 30 30 H 1.09002 * 113.61228 * 89.11929 * 12 11 10 31 31 H 1.09005 * 109.47501 * 303.47224 * 13 12 11 32 32 H 1.09004 * 109.47494 * 63.47236 * 13 12 11 33 33 H 0.96997 * 120.00462 * 0.02562 * 14 13 12 34 34 H 1.09001 * 117.46404 * 356.29420 * 18 17 15 35 35 H 1.09004 * 117.46280 * 141.09772 * 18 17 15 36 36 H 1.09001 * 110.48841 * 264.93439 * 21 19 17 37 37 H 1.09001 * 110.60097 * 142.34012 * 21 19 17 38 38 H 1.08998 * 110.75738 * 203.74302 * 22 21 19 39 39 H 1.09005 * 110.91722 * 80.44370 * 22 21 19 40 40 H 1.08993 * 110.48907 * 235.04790 * 23 17 15 41 41 H 1.09000 * 110.48638 * 357.56203 * 23 17 15 42 42 H 1.09003 * 113.61775 * 334.57164 * 24 10 9 43 43 H 1.08996 * 113.61960 * 203.65890 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 -0.0011 11 6 5.5259 -2.3664 0.5950 12 6 6.0130 -2.0227 -0.8226 13 6 7.3484 -2.6745 -1.1866 14 7 7.7659 -2.2229 -2.5162 15 6 8.9212 -2.6694 -3.0477 16 8 9.6150 -3.4455 -2.4253 17 6 9.3504 -2.2053 -4.4157 18 6 9.3082 -3.1883 -5.5873 19 6 10.6728 -2.6798 -5.0432 20 1 11.3410 -3.3579 -4.5122 21 6 11.3119 -1.4446 -5.7109 22 6 10.6940 -0.2421 -4.9553 23 6 9.2320 -0.6984 -4.7239 24 6 4.7876 -2.7910 -1.3450 25 1 -0.4849 0.8401 -0.0004 26 1 3.8647 -0.3621 0.0004 27 1 3.5283 -3.2982 0.4021 28 1 5.9120 -3.3137 0.9716 29 1 5.6419 -1.5491 1.3067 30 1 5.9877 -0.9562 -1.0463 31 1 8.1032 -2.3910 -0.4530 32 1 7.2346 -3.7586 -1.1902 33 1 7.2113 -1.6019 -3.0139 34 1 9.0229 -4.2176 -5.3698 35 1 8.9812 -2.8048 -6.5538 36 1 11.0516 -1.4052 -6.7686 37 1 12.3946 -1.4582 -5.5857 38 1 10.7252 0.6576 -5.5698 39 1 11.2020 -0.0768 -4.0051 40 1 8.6358 -0.5384 -5.6222 41 1 8.7946 -0.1690 -3.8775 42 1 4.3063 -2.3158 -2.1999 43 1 4.9719 -3.8542 -1.4988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091151141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:06 Heat of formation + Delta-G solvation = -6.825510 kcal Electronic energy + Delta-G solvation = -21413.468407 eV Core-core repulsion = 18265.961272 eV Total energy + Delta-G solvation = -3147.507134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53624 -40.28978 -38.98616 -36.10315 -34.98561 -32.69465 -32.51559 -29.98973 -28.43513 -26.48123 -25.56441 -24.30214 -23.26110 -22.77699 -21.28645 -20.59299 -19.81780 -19.53744 -18.15822 -17.18683 -16.75891 -16.52546 -16.10617 -15.96021 -15.68869 -15.12355 -14.80667 -14.63396 -14.48065 -14.19967 -13.99676 -13.89977 -13.38199 -13.11977 -13.02987 -12.80184 -12.68804 -12.25404 -12.07747 -12.04208 -11.89844 -11.87304 -11.66589 -11.52332 -11.33093 -11.03132 -10.90925 -10.72429 -10.60593 -10.10281 -9.30815 -8.03216 -5.37171 1.37310 1.41120 1.46776 1.48581 2.12871 2.47801 2.59032 3.27137 3.45534 3.49578 3.59546 3.64642 3.72490 3.83295 3.93299 3.98771 4.23550 4.25932 4.34914 4.39699 4.48249 4.63961 4.66235 4.71317 4.74683 4.80110 4.90675 4.94458 4.95301 5.00126 5.06708 5.14419 5.18631 5.24433 5.25974 5.30498 5.44808 5.47511 5.52293 5.80006 6.22143 6.51151 7.07168 7.18852 7.83678 8.02591 9.18365 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003446 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.424208 B = 8123.028161 C = 8751.143965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.251 1.251 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.734 5.734 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.104 4.104 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.549 3.451 16 O -0.590 6.590 17 C -0.190 4.190 18 C -0.112 4.112 19 C -0.135 4.135 20 H 0.100 0.900 21 C -0.091 4.091 22 C -0.122 4.122 23 C -0.086 4.086 24 C -0.154 4.154 25 H 0.258 0.742 26 H 0.367 0.633 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.412 0.588 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.054 -1.723 -12.404 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.037 3.963 11 C -0.173 4.173 12 C -0.123 4.123 13 C 0.015 3.985 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.471 6.471 17 C -0.193 4.193 18 C -0.149 4.149 19 C -0.154 4.154 20 H 0.118 0.882 21 C -0.129 4.129 22 C -0.160 4.160 23 C -0.123 4.123 24 C -0.194 4.194 25 H 0.067 0.933 26 H 0.201 0.799 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.298 -2.337 -11.908 27.160 hybrid contribution -0.524 1.045 0.263 1.198 sum 23.774 -1.292 -11.646 26.505 Atomic orbital electron populations 1.69891 1.07227 1.26746 1.59636 1.25529 0.96126 1.01361 1.02614 0.85397 0.78617 0.79450 0.78238 1.20093 1.22412 1.17574 1.19066 0.82584 0.93478 1.41300 0.92591 1.42430 1.02266 1.03489 1.89340 1.21329 0.91521 0.87845 0.95629 1.23365 0.95497 1.02910 0.95538 1.22571 0.92304 0.99873 0.97554 1.21312 0.95076 0.98769 0.83373 1.45947 1.22592 1.48413 1.19358 1.19914 0.80240 0.79427 0.86779 1.90658 1.55247 1.37490 1.63665 1.22493 1.07260 0.97538 0.91967 1.23574 0.97691 0.97558 0.96085 1.23831 0.88889 1.00716 1.01960 0.88173 1.22011 1.00144 0.90841 0.99860 1.22688 0.94221 0.98608 1.00472 1.22010 0.98419 0.89118 1.02797 1.23699 0.96524 1.00137 0.99070 0.93307 0.79939 0.92449 0.87657 0.91452 0.89095 0.91881 0.91771 0.75194 0.88738 0.85475 0.89302 0.90374 0.89077 0.92382 0.88754 0.91231 0.92690 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.73 13.97 21.65 0.30 -62.43 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 44.36 27.74 68.60 1.90 46.27 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 7 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 N -0.73 -33.01 5.11 -320.44 -1.64 -34.65 16 10 C 0.15 5.24 4.56 45.52 0.21 5.45 16 11 C -0.13 -3.65 7.39 31.12 0.23 -3.42 16 12 C -0.10 -2.62 3.63 -10.27 -0.04 -2.65 16 13 C 0.14 3.25 5.50 86.38 0.48 3.73 16 14 N -0.71 -15.73 5.38 -463.05 -2.49 -18.22 16 15 C 0.55 13.80 7.41 87.65 0.65 14.45 16 16 O -0.59 -19.63 16.79 -3.03 -0.05 -19.68 16 17 C -0.19 -3.46 2.60 -52.21 -0.14 -3.60 16 18 C -0.11 -1.68 10.00 31.44 0.31 -1.37 16 19 C -0.14 -2.27 6.64 -9.22 -0.06 -2.33 16 20 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 21 C -0.09 -1.05 6.64 31.67 0.21 -0.84 16 22 C -0.12 -1.47 6.91 31.88 0.22 -1.25 16 23 C -0.09 -1.16 6.18 31.67 0.20 -0.97 16 24 C -0.15 -4.54 7.43 31.12 0.23 -4.31 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.37 15.67 5.76 -92.71 -0.53 15.13 16 27 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 28 H 0.11 2.41 8.10 -2.38 -0.02 2.39 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 1.59 7.88 -2.39 -0.02 1.57 16 33 H 0.41 7.58 7.98 -92.71 -0.74 6.84 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.99 7.60 -2.39 -0.02 0.97 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 2.35 7.92 -2.39 -0.02 2.33 16 Total: -1.00 -71.58 347.99 1.53 -70.04 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.33 Total: 31.32 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.84 Total: -12.65 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.83 Total: -115.29 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.27 kcal Total: -71.58 1.53 -70.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091151141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.217 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds