Wall clock time and date at job start Mon Mar 30 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00287 * 2 1 4 4 H 1.48494 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46924 * 300.00028 * 3 2 1 6 6 H 1.48506 * 109.47174 * 59.99602 * 3 2 1 7 7 C 1.38815 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.84011 * 0.03070 * 9 7 2 11 11 H 1.09007 * 116.45861 * 359.97272 * 10 9 7 12 12 C 1.55837 * 101.05213 * 233.94141 * 10 9 7 13 13 C 1.54850 * 103.44655 * 327.06094 * 12 10 9 14 14 C 1.50234 * 130.84090 * 179.97438 * 9 7 2 15 15 H 1.09004 * 115.85741 * 0.39002 * 14 9 7 16 16 C 1.55839 * 101.75767 * 234.18591 * 14 9 7 17 17 H 1.09000 * 110.62865 * 85.31959 * 16 14 9 18 18 N 1.46500 * 110.62963 * 208.17854 * 16 14 9 19 19 C 1.34778 * 120.00221 * 274.01754 * 18 16 14 20 20 O 1.21280 * 119.99728 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00010 * 179.97438 * 19 18 16 22 22 C 1.54264 * 110.03135 * 297.91181 * 21 19 18 23 23 C 1.54972 * 104.15664 * 217.13536 * 22 21 19 24 24 C 1.54890 * 102.77409 * 37.88884 * 23 22 21 25 25 C 1.53869 * 110.02859 * 180.69028 * 21 19 18 26 26 C 1.55845 * 101.05325 * 126.00256 * 10 9 7 27 27 H 0.96998 * 119.99557 * 0.02562 * 1 2 3 28 28 H 1.09007 * 110.62533 * 85.54722 * 12 10 9 29 29 H 1.08999 * 110.62829 * 208.56771 * 12 10 9 30 30 H 1.09003 * 110.63037 * 118.48394 * 13 12 10 31 31 H 1.09003 * 110.63015 * 241.35150 * 13 12 10 32 32 H 0.97004 * 119.99950 * 94.01886 * 18 16 14 33 33 H 1.09003 * 110.01026 * 59.30088 * 21 19 18 34 34 H 1.09003 * 110.48672 * 335.78016 * 22 21 19 35 35 H 1.08998 * 110.48737 * 98.42848 * 22 21 19 36 36 H 1.08998 * 110.71937 * 279.57193 * 23 22 21 37 37 H 1.09000 * 110.76632 * 156.22052 * 23 22 21 38 38 H 1.09007 * 110.48117 * 203.40669 * 24 23 22 39 39 H 1.08997 * 110.59978 * 80.82021 * 24 23 22 40 40 H 1.09003 * 110.03135 * 238.56770 * 25 21 19 41 41 H 1.09000 * 110.03980 * 359.95350 * 25 21 19 42 42 H 1.09001 * 110.62301 * 151.42704 * 26 10 9 43 43 H 1.08998 * 110.62854 * 274.44916 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1500 -2.6706 0.0018 11 1 -0.8105 -1.8034 0.0014 12 6 -0.2742 -3.6098 1.2391 13 6 1.0668 -4.3841 1.2395 14 6 1.8186 -3.8072 0.0019 15 1 2.9012 -3.9344 0.0077 16 6 1.0786 -4.4007 -1.2345 17 1 1.6384 -4.2029 -2.1486 18 7 0.8624 -5.8397 -1.0649 19 6 1.8242 -6.7127 -1.4244 20 8 2.8689 -6.3069 -1.8879 21 6 1.6020 -8.1929 -1.2494 22 6 1.4060 -8.5249 0.2443 23 6 2.1195 -9.8884 0.4264 24 6 3.3628 -9.7490 -0.4868 25 6 2.8454 -8.9711 -1.7143 26 6 -0.2743 -3.6110 -1.2348 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3815 -3.0272 2.1541 29 1 -1.1132 -4.2950 1.1184 30 1 1.6247 -4.1855 2.1546 31 1 0.8928 -5.4537 1.1217 32 1 0.0269 -6.1642 -0.6939 33 1 0.7287 -8.5090 -1.8200 34 1 1.8734 -7.7635 0.8688 35 1 0.3454 -8.6140 0.4792 36 1 1.4818 -10.7054 0.0888 37 1 2.4172 -10.0332 1.4649 38 1 3.7295 -10.7314 -0.7845 39 1 4.1482 -9.1866 0.0180 40 1 2.5753 -9.6656 -2.5099 41 1 3.6092 -8.2782 -2.0673 42 1 -1.1133 -4.2961 -1.1132 43 1 -0.3816 -3.0293 -2.1503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095084462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:17 Heat of formation + Delta-G solvation = -6.504288 kcal Electronic energy + Delta-G solvation = -22803.110380 eV Core-core repulsion = 19655.617175 eV Total energy + Delta-G solvation = -3147.493205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21531 -38.76896 -36.84576 -33.89824 -32.32180 -29.80681 -29.13029 -28.88062 -28.65707 -27.22346 -24.20374 -22.19731 -21.24104 -20.76058 -19.72604 -19.22491 -18.49002 -17.36823 -16.88980 -15.81997 -15.38041 -15.04929 -14.78136 -14.40581 -14.06820 -13.87461 -13.47690 -13.23867 -12.43376 -12.25154 -11.82582 -11.62175 -11.55287 -11.34986 -11.23417 -11.18178 -11.03305 -10.90167 -10.88672 -10.82228 -10.80124 -10.58101 -10.18333 -10.04697 -9.81774 -9.50563 -9.34501 -9.20015 -8.92648 -8.46342 -6.89713 -5.71965 -3.09482 2.93162 3.39953 3.45594 3.47933 3.52543 4.39367 4.46352 4.51502 4.70338 5.14861 5.23099 5.25231 5.34165 5.40116 5.40661 5.50968 5.55348 5.56390 5.71996 5.79898 5.82773 5.87025 5.95801 5.98643 6.05954 6.10357 6.14109 6.19758 6.30130 6.34866 6.36351 6.55231 6.62497 6.72202 6.84069 6.98470 7.02379 7.28976 7.54586 7.76805 7.90146 8.16709 8.57624 9.11839 9.74145 10.54996 11.38053 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.004341 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.437927 B = 6448.124083 C = 6677.592299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.153 0.847 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.083 0.917 16 C 0.124 3.876 17 H 0.080 0.920 18 N -0.710 5.710 19 C 0.513 3.487 20 O -0.543 6.543 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.138 4.138 27 H 0.253 0.747 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.394 0.606 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -18.309 0.133 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.049 3.951 11 H 0.170 0.830 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.101 0.899 16 C 0.018 3.982 17 H 0.098 0.902 18 N -0.360 5.360 19 C 0.299 3.701 20 O -0.420 6.420 21 C -0.135 4.135 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.178 4.178 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.228 0.772 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.586 -17.635 -0.213 17.646 hybrid contribution -0.024 0.618 0.169 0.641 sum -0.610 -17.017 -0.044 17.028 Atomic orbital electron populations 1.69475 1.04988 1.24832 1.57930 1.24692 0.95646 0.97476 1.02955 0.85963 0.78697 0.83469 0.77191 1.20547 1.21780 1.21823 1.19117 0.90409 0.81872 1.42282 0.90278 1.46452 1.01548 0.98838 1.84151 1.23695 0.87748 0.95016 0.88643 0.83035 1.23050 0.95134 0.98173 1.01284 1.22918 0.97592 0.97598 0.98876 1.23153 0.96158 0.86016 0.92669 0.89921 1.22892 0.98096 0.77147 1.00048 0.90159 1.46147 1.18576 1.07221 1.64090 1.20502 0.83835 0.88341 0.77431 1.90660 1.26477 1.79823 1.45035 1.21945 1.00676 0.92507 0.98400 1.22384 1.01012 0.97894 0.94083 1.22505 0.96906 0.96866 0.99790 1.22360 0.97746 0.99864 0.96195 1.22151 0.97164 0.98693 0.97672 1.23587 0.93790 0.98194 1.02262 0.93661 0.92710 0.93690 0.93217 0.93028 0.77189 0.88834 0.90818 0.91001 0.91447 0.91446 0.91768 0.91499 0.91784 0.89140 0.92894 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.48 55.49 0.58 -25.71 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.59 -14.82 2.99 -145.80 -0.44 -15.25 16 10 C 0.16 3.51 4.69 -62.80 -0.29 3.22 16 11 H 0.15 3.91 5.58 -51.92 -0.29 3.62 16 12 C -0.14 -2.64 6.44 -24.24 -0.16 -2.80 16 13 C -0.13 -2.41 6.33 -24.22 -0.15 -2.56 16 14 C 0.13 2.75 5.30 -62.79 -0.33 2.42 16 15 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 16 C 0.12 2.35 3.15 -64.45 -0.20 2.14 16 17 H 0.08 1.72 7.70 -51.93 -0.40 1.32 16 18 N -0.71 -10.49 3.61 -50.45 -0.18 -10.67 16 19 C 0.51 7.80 7.00 -10.98 -0.08 7.72 16 20 O -0.54 -10.55 14.94 5.56 0.08 -10.47 16 21 C -0.11 -1.25 3.29 -90.66 -0.30 -1.55 16 22 C -0.12 -1.10 6.30 -25.03 -0.16 -1.26 16 23 C -0.12 -1.03 6.91 -24.69 -0.17 -1.20 16 24 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 25 C -0.12 -1.31 6.40 -25.61 -0.16 -1.47 16 26 C -0.14 -2.64 6.28 -23.25 -0.15 -2.79 16 27 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.81 6.46 -51.93 -0.34 0.47 16 32 H 0.39 4.77 8.07 -40.82 -0.33 4.44 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.24 6.39 -51.93 -0.33 0.91 16 42 H 0.05 0.84 7.43 -51.93 -0.39 0.46 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -30.59 330.87 -9.65 -40.25 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.08 Total: 5.61 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.58 Total: -5.88 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.04 Total: -51.63 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.59 -9.65 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095084462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.741 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds