Wall clock time and date at job start Mon Mar 30 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00287 * 2 1 4 4 H 1.48494 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46924 * 300.00028 * 3 2 1 6 6 H 1.48506 * 109.47174 * 59.99602 * 3 2 1 7 7 C 1.38815 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.84011 * 0.03070 * 9 7 2 11 11 H 1.09007 * 116.45861 * 359.97272 * 10 9 7 12 12 C 1.55837 * 101.05213 * 233.94141 * 10 9 7 13 13 C 1.54850 * 103.44655 * 327.06094 * 12 10 9 14 14 C 1.50234 * 130.84090 * 179.97438 * 9 7 2 15 15 H 1.09004 * 115.85741 * 0.39002 * 14 9 7 16 16 C 1.55839 * 101.75767 * 234.18591 * 14 9 7 17 17 H 1.09000 * 110.62865 * 85.31959 * 16 14 9 18 18 N 1.46500 * 110.62963 * 208.17854 * 16 14 9 19 19 C 1.34778 * 120.00221 * 274.01754 * 18 16 14 20 20 O 1.21280 * 119.99728 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00010 * 179.97438 * 19 18 16 22 22 C 1.54264 * 110.03135 * 297.91181 * 21 19 18 23 23 C 1.54972 * 104.15664 * 217.13536 * 22 21 19 24 24 C 1.54890 * 102.77409 * 37.88884 * 23 22 21 25 25 C 1.53869 * 110.02859 * 180.69028 * 21 19 18 26 26 C 1.55845 * 101.05325 * 126.00256 * 10 9 7 27 27 H 0.96998 * 119.99557 * 0.02562 * 1 2 3 28 28 H 1.09007 * 110.62533 * 85.54722 * 12 10 9 29 29 H 1.08999 * 110.62829 * 208.56771 * 12 10 9 30 30 H 1.09003 * 110.63037 * 118.48394 * 13 12 10 31 31 H 1.09003 * 110.63015 * 241.35150 * 13 12 10 32 32 H 0.97004 * 119.99950 * 94.01886 * 18 16 14 33 33 H 1.09003 * 110.01026 * 59.30088 * 21 19 18 34 34 H 1.09003 * 110.48672 * 335.78016 * 22 21 19 35 35 H 1.08998 * 110.48737 * 98.42848 * 22 21 19 36 36 H 1.08998 * 110.71937 * 279.57193 * 23 22 21 37 37 H 1.09000 * 110.76632 * 156.22052 * 23 22 21 38 38 H 1.09007 * 110.48117 * 203.40669 * 24 23 22 39 39 H 1.08997 * 110.59978 * 80.82021 * 24 23 22 40 40 H 1.09003 * 110.03135 * 238.56770 * 25 21 19 41 41 H 1.09000 * 110.03980 * 359.95350 * 25 21 19 42 42 H 1.09001 * 110.62301 * 151.42704 * 26 10 9 43 43 H 1.08998 * 110.62854 * 274.44916 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1500 -2.6706 0.0018 11 1 -0.8105 -1.8034 0.0014 12 6 -0.2742 -3.6098 1.2391 13 6 1.0668 -4.3841 1.2395 14 6 1.8186 -3.8072 0.0019 15 1 2.9012 -3.9344 0.0077 16 6 1.0786 -4.4007 -1.2345 17 1 1.6384 -4.2029 -2.1486 18 7 0.8624 -5.8397 -1.0649 19 6 1.8242 -6.7127 -1.4244 20 8 2.8689 -6.3069 -1.8879 21 6 1.6020 -8.1929 -1.2494 22 6 1.4060 -8.5249 0.2443 23 6 2.1195 -9.8884 0.4264 24 6 3.3628 -9.7490 -0.4868 25 6 2.8454 -8.9711 -1.7143 26 6 -0.2743 -3.6110 -1.2348 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3815 -3.0272 2.1541 29 1 -1.1132 -4.2950 1.1184 30 1 1.6247 -4.1855 2.1546 31 1 0.8928 -5.4537 1.1217 32 1 0.0269 -6.1642 -0.6939 33 1 0.7287 -8.5090 -1.8200 34 1 1.8734 -7.7635 0.8688 35 1 0.3454 -8.6140 0.4792 36 1 1.4818 -10.7054 0.0888 37 1 2.4172 -10.0332 1.4649 38 1 3.7295 -10.7314 -0.7845 39 1 4.1482 -9.1866 0.0180 40 1 2.5753 -9.6656 -2.5099 41 1 3.6092 -8.2782 -2.0673 42 1 -1.1133 -4.2961 -1.1132 43 1 -0.3816 -3.0293 -2.1503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095084462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:17 Heat of formation + Delta-G solvation = -24.456502 kcal Electronic energy + Delta-G solvation = -22803.888846 eV Core-core repulsion = 19655.617175 eV Total energy + Delta-G solvation = -3148.271672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56638 -40.17802 -37.84523 -35.45311 -34.21855 -31.06758 -30.95051 -30.22296 -29.48513 -28.70856 -26.13078 -23.44161 -22.64838 -21.58811 -21.33135 -20.43561 -20.08935 -18.91491 -18.32877 -16.94260 -16.83854 -16.47749 -16.39178 -15.81846 -15.55907 -15.21964 -14.52314 -14.21833 -14.14084 -13.85551 -13.47329 -13.24592 -12.91061 -12.82093 -12.63199 -12.58731 -12.34158 -12.18077 -11.99824 -11.96767 -11.90491 -11.86985 -11.57673 -11.53882 -11.36846 -11.17988 -11.05849 -10.79992 -10.63376 -9.96301 -8.86527 -7.81495 -5.20390 1.44854 1.45391 1.55276 1.73128 2.24628 2.49971 3.32320 3.49959 3.59193 3.74107 3.84533 3.93841 4.11465 4.14436 4.31651 4.39974 4.47417 4.53242 4.60170 4.61302 4.63949 4.71587 4.74072 4.80884 4.86770 4.96990 5.04436 5.07635 5.13136 5.13853 5.23528 5.30119 5.30796 5.32922 5.44108 5.47144 5.52332 5.57385 5.76991 5.88801 6.25169 6.70012 7.04723 7.39286 7.67477 8.54064 9.25851 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.004341 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.437927 B = 6448.124083 C = 6677.592299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.618 5.618 10 C 0.139 3.861 11 H 0.120 0.880 12 C -0.125 4.125 13 C -0.115 4.115 14 C 0.118 3.882 15 H 0.058 0.942 16 C 0.143 3.857 17 H 0.047 0.953 18 N -0.696 5.696 19 C 0.510 3.490 20 O -0.592 6.592 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.123 4.123 27 H 0.249 0.751 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.125 0.875 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -21.251 0.713 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.254 4.254 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.033 3.967 11 H 0.137 0.863 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.010 3.990 15 H 0.076 0.924 16 C 0.036 3.964 17 H 0.065 0.935 18 N -0.347 5.347 19 C 0.298 3.702 20 O -0.472 6.472 21 C -0.126 4.126 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.163 4.163 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.252 0.748 33 H 0.143 0.857 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.290 -20.634 0.383 20.765 hybrid contribution 0.565 1.497 -0.050 1.601 sum -1.725 -19.137 0.333 19.218 Atomic orbital electron populations 1.69694 1.05831 1.25028 1.58690 1.25394 0.96568 1.00090 1.03353 0.85050 0.77798 0.79858 0.76866 1.20056 1.21783 1.21642 1.19324 0.90418 0.83683 1.42128 0.91376 1.46712 1.03087 0.99414 1.84815 1.23635 0.85837 0.95381 0.91804 0.86297 1.22943 0.96916 0.97969 0.98551 1.22812 0.96484 0.99424 0.96674 1.23278 0.95495 0.84886 0.95358 0.92375 1.22317 0.97189 0.79618 0.97283 0.93502 1.45898 1.19560 1.05170 1.64103 1.21377 0.82763 0.90175 0.75899 1.90658 1.28597 1.80960 1.47025 1.22028 1.01745 0.88535 1.00314 1.22436 1.02812 0.97931 0.92083 1.22507 0.96172 0.96816 0.99900 1.22371 0.98100 1.00106 0.95722 1.22174 0.96406 0.98520 0.98984 1.23408 0.95194 0.97997 0.99680 0.94098 0.94667 0.89218 0.94262 0.89267 0.74802 0.85713 0.92741 0.88091 0.89324 0.90779 0.90173 0.93343 0.89899 0.92726 0.88437 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.15 10.48 21.65 0.23 -54.92 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.23 -13.11 10.59 84.03 0.89 -12.22 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.62 -31.99 2.99 -615.21 -1.84 -33.83 16 10 C 0.14 6.28 4.69 46.22 0.22 6.49 16 11 H 0.12 6.26 5.58 -2.38 -0.01 6.24 16 12 C -0.12 -4.54 6.44 32.21 0.21 -4.33 16 13 C -0.11 -4.05 6.33 32.22 0.20 -3.84 16 14 C 0.12 5.09 5.30 46.24 0.24 5.34 16 15 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 16 C 0.14 5.36 3.15 47.25 0.15 5.51 16 17 H 0.05 2.08 7.70 -2.39 -0.02 2.06 16 18 N -0.70 -18.80 3.61 -431.93 -1.56 -20.36 16 19 C 0.51 14.73 7.00 87.66 0.61 15.35 16 20 O -0.59 -23.51 14.94 -3.03 -0.05 -23.55 16 21 C -0.11 -1.97 3.29 -10.82 -0.04 -2.01 16 22 C -0.11 -1.70 6.30 31.70 0.20 -1.50 16 23 C -0.12 -1.47 6.91 31.91 0.22 -1.25 16 24 C -0.13 -2.09 6.83 31.67 0.22 -1.87 16 25 C -0.12 -2.48 6.40 31.32 0.20 -2.28 16 26 C -0.12 -4.54 6.28 32.85 0.21 -4.33 16 27 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.09 2.47 7.82 -2.39 -0.02 2.46 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 2.46 6.46 -2.39 -0.02 2.44 16 32 H 0.41 7.99 8.07 -92.71 -0.75 7.24 16 33 H 0.12 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.03 7.85 -2.39 -0.02 1.02 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.52 6.39 -2.39 -0.02 1.50 16 42 H 0.10 2.70 7.43 -2.39 -0.02 2.68 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.38 330.87 3.05 -68.33 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.25 Total: 19.52 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.00 Total: -3.98 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.18 Total: -109.12 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -71.38 3.05 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095084462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds