Wall clock time and date at job start Mon Mar 30 2020 23:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99600 * 2 1 4 4 H 1.48509 * 109.46979 * 240.00039 * 3 2 1 5 5 H 1.48491 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46788 * 120.00887 * 3 2 1 7 7 C 1.38810 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.84077 * 359.97299 * 9 7 2 11 11 H 1.09003 * 115.85663 * 0.37692 * 10 9 7 12 12 C 1.55852 * 101.04746 * 234.70412 * 10 9 7 13 13 C 1.57710 * 103.12333 * 325.95977 * 12 10 9 14 14 C 1.50233 * 130.83657 * 179.97438 * 9 7 2 15 15 H 1.09009 * 115.85974 * 359.61956 * 14 9 7 16 16 C 1.55846 * 101.05427 * 233.94735 * 14 9 7 17 17 H 1.08999 * 110.62837 * 208.41741 * 16 14 9 18 18 N 1.46496 * 110.62569 * 85.54703 * 16 14 9 19 19 C 1.34781 * 119.99557 * 157.20490 * 18 16 14 20 20 O 1.21279 * 120.00050 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.54891 * 110.91514 * 66.57499 * 21 19 18 23 23 C 1.54267 * 104.19324 * 156.33308 * 22 21 19 24 24 C 1.53876 * 106.59870 * 336.39035 * 23 22 21 25 25 C 1.54261 * 106.59990 * 0.02562 * 24 23 22 26 26 C 1.54852 * 103.58400 * 326.98317 * 16 14 9 27 27 H 0.97004 * 120.00238 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.62526 * 85.55299 * 12 10 9 29 29 H 1.08998 * 110.61946 * 208.41261 * 12 10 9 30 30 H 1.09005 * 111.90859 * 242.54154 * 13 12 10 31 31 H 1.08996 * 110.06887 * 119.02079 * 13 12 10 32 32 H 0.96999 * 120.00906 * 337.20379 * 18 16 14 33 33 H 1.09005 * 110.66972 * 303.23518 * 21 19 18 34 34 H 1.09004 * 110.48613 * 37.65680 * 22 21 19 35 35 H 1.08994 * 110.48745 * 275.01098 * 22 21 19 36 36 H 1.08995 * 110.03032 * 217.10762 * 23 22 21 37 37 H 1.08998 * 110.03405 * 95.67701 * 23 22 21 38 38 H 1.08998 * 110.02768 * 119.28860 * 24 23 22 39 39 H 1.08994 * 110.03051 * 240.71540 * 24 23 22 40 40 H 1.09000 * 110.48928 * 142.28640 * 25 24 23 41 41 H 1.09001 * 110.48691 * 264.79667 * 25 24 23 42 42 H 1.09001 * 110.62698 * 118.56744 * 26 16 14 43 43 H 1.08997 * 110.62876 * 241.59204 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1500 -2.6706 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2761 -3.5954 1.2486 13 6 1.0800 -4.4004 1.2363 14 6 1.8187 -3.8071 -0.0016 15 1 2.9013 -3.9343 -0.0090 16 6 1.0655 -4.3843 -1.2378 17 1 0.8942 -5.4541 -1.1181 18 7 1.8137 -4.1176 -2.4687 19 6 1.6155 -4.8865 -3.5578 20 8 0.8181 -5.7994 -3.5186 21 6 2.3856 -4.6126 -4.8239 22 6 3.8954 -4.8952 -4.6249 23 6 4.4196 -5.1707 -6.0494 24 6 3.2099 -5.6308 -6.8817 25 6 1.9927 -5.6183 -5.9341 26 6 -0.2775 -3.6135 -1.2380 27 1 -0.4851 0.8401 0.0004 28 1 -0.3849 -3.0022 2.1566 29 1 -1.1166 -4.2801 1.1357 30 1 0.9165 -5.4706 1.1092 31 1 1.6408 -4.2024 2.1497 32 1 2.4518 -3.3877 -2.5001 33 1 2.2252 -3.5873 -5.1576 34 1 4.0394 -5.7692 -3.9897 35 1 4.3932 -4.0251 -4.1969 36 1 5.1755 -5.9556 -6.0238 37 1 4.8409 -4.2599 -6.4749 38 1 3.0442 -4.9433 -7.7111 39 1 3.3787 -6.6390 -7.2599 40 1 1.1022 -5.2763 -6.4615 41 1 1.8277 -6.6095 -5.5118 42 1 -0.3868 -3.0328 -2.1539 43 1 -1.1147 -4.3006 -1.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096713360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:20 Heat of formation + Delta-G solvation = -12.778216 kcal Electronic energy + Delta-G solvation = -22680.446171 eV Core-core repulsion = 19532.680908 eV Total energy + Delta-G solvation = -3147.765263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94089 -38.68851 -36.87084 -33.70142 -32.49146 -29.68323 -29.06544 -28.71855 -28.55810 -27.33923 -24.20207 -22.50981 -20.82412 -20.26078 -19.77869 -19.36385 -18.61785 -17.00270 -16.99042 -15.85048 -15.63902 -14.85255 -14.67773 -14.28686 -13.88422 -13.54149 -13.37125 -13.24414 -12.85925 -12.10031 -11.91799 -11.82849 -11.34741 -11.22227 -11.16857 -11.11701 -11.05090 -10.94340 -10.89463 -10.74895 -10.52010 -10.48939 -10.32343 -10.12658 -9.88623 -9.57685 -9.22528 -9.09502 -8.96391 -8.38583 -6.95329 -5.75169 -3.14446 3.05076 3.35165 3.39876 3.41482 3.69787 4.39757 4.48814 4.58067 4.75579 5.13961 5.28650 5.34950 5.35473 5.42295 5.49603 5.56352 5.60585 5.64539 5.70024 5.81045 5.85139 5.88036 5.98453 6.04841 6.13020 6.15991 6.19029 6.24792 6.31481 6.34590 6.44082 6.50109 6.60027 6.76649 6.83087 6.96300 7.16876 7.34344 7.45822 7.78585 8.08384 8.16950 8.71417 9.06254 9.69592 10.51261 11.33622 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.005432 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.889671 B = 5153.848421 C = 6147.294738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.215 4.215 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.152 3.848 11 H 0.152 0.848 12 C -0.136 4.136 13 C -0.131 4.131 14 C 0.126 3.874 15 H 0.086 0.914 16 C 0.128 3.872 17 H 0.077 0.923 18 N -0.705 5.705 19 C 0.516 3.484 20 O -0.555 6.555 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.142 4.142 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.402 0.598 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -9.015 -7.953 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.046 3.954 11 H 0.169 0.831 12 C -0.175 4.175 13 C -0.171 4.171 14 C 0.017 3.983 15 H 0.104 0.896 16 C 0.022 3.978 17 H 0.095 0.905 18 N -0.354 5.354 19 C 0.302 3.698 20 O -0.434 6.434 21 C -0.138 4.138 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.142 4.142 26 C -0.182 4.182 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.157 -9.303 -7.908 13.254 hybrid contribution 0.759 1.238 0.025 1.453 sum 5.916 -8.064 -7.884 12.735 Atomic orbital electron populations 1.69458 1.05006 1.25087 1.57188 1.24695 0.95578 0.97456 1.02801 0.86149 0.78378 0.83117 0.77792 1.21310 1.21608 1.21294 1.18950 0.90151 0.81933 1.43251 0.90489 1.46499 1.01634 0.98544 1.84416 1.23800 0.87373 0.95386 0.88847 0.83123 1.23514 0.94988 0.97911 1.01120 1.23379 0.97815 0.97415 0.98453 1.23132 0.95933 0.86941 0.92275 0.89638 1.22612 0.92877 0.98352 0.83975 0.90543 1.46039 1.43520 1.33750 1.12044 1.20420 0.82601 0.81940 0.84808 1.90637 1.36819 1.31792 1.84124 1.22311 0.95795 1.01739 0.93979 1.22318 0.93216 1.02081 0.97418 1.22119 0.97765 1.01136 0.95024 1.22158 0.94794 1.01191 0.98167 1.22190 0.97380 0.99803 0.94780 1.23486 0.95024 0.98335 1.01392 0.93494 0.92457 0.93502 0.92768 0.92550 0.76367 0.88305 0.91215 0.90881 0.91780 0.91671 0.91880 0.91820 0.91486 0.90332 0.92296 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.68 10.46 55.49 0.58 -25.09 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.21 -5.57 10.59 -15.06 -0.16 -5.73 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.59 -13.91 2.99 -145.59 -0.44 -14.35 16 10 C 0.15 3.48 4.67 -62.61 -0.29 3.19 16 11 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 12 C -0.14 -2.71 6.58 -22.63 -0.15 -2.86 16 13 C -0.13 -2.38 6.60 -22.62 -0.15 -2.53 16 14 C 0.13 2.45 5.00 -62.78 -0.31 2.14 16 15 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 16 C 0.13 2.43 2.75 -65.44 -0.18 2.25 16 17 H 0.08 1.47 7.28 -51.93 -0.38 1.09 16 18 N -0.70 -12.22 5.08 -51.40 -0.26 -12.48 16 19 C 0.52 8.73 7.15 -10.98 -0.08 8.65 16 20 O -0.55 -11.17 15.41 5.56 0.09 -11.08 16 21 C -0.12 -1.53 3.28 -89.79 -0.29 -1.82 16 22 C -0.11 -1.23 6.27 -25.07 -0.16 -1.39 16 23 C -0.12 -1.14 6.80 -25.61 -0.17 -1.32 16 24 C -0.13 -1.20 6.80 -25.61 -0.17 -1.38 16 25 C -0.10 -1.26 5.90 -25.09 -0.15 -1.41 16 26 C -0.14 -2.95 6.27 -24.05 -0.15 -3.10 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 30 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.40 6.74 8.64 -40.82 -0.35 6.39 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.07 7.45 -51.93 -0.39 0.68 16 42 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16 43 H 0.05 1.03 7.86 -51.93 -0.41 0.63 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -29.12 334.97 -9.75 -38.88 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.23 Total: 8.51 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.52 Total: -5.66 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.12 Total: -51.92 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.12 -9.75 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096713360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.097 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds