Wall clock time and date at job start Mon Mar 30 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99600 * 2 1 4 4 H 1.48509 * 109.46979 * 240.00039 * 3 2 1 5 5 H 1.48491 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46788 * 120.00887 * 3 2 1 7 7 C 1.38810 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.84077 * 359.97299 * 9 7 2 11 11 H 1.09003 * 115.85663 * 0.37692 * 10 9 7 12 12 C 1.55852 * 101.04746 * 234.70412 * 10 9 7 13 13 C 1.57710 * 103.12333 * 325.95977 * 12 10 9 14 14 C 1.50233 * 130.83657 * 179.97438 * 9 7 2 15 15 H 1.09009 * 115.85974 * 359.61956 * 14 9 7 16 16 C 1.55846 * 101.05427 * 233.94735 * 14 9 7 17 17 H 1.08999 * 110.62837 * 208.41741 * 16 14 9 18 18 N 1.46496 * 110.62569 * 85.54703 * 16 14 9 19 19 C 1.34781 * 119.99557 * 157.20490 * 18 16 14 20 20 O 1.21279 * 120.00050 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.54891 * 110.91514 * 66.57499 * 21 19 18 23 23 C 1.54267 * 104.19324 * 156.33308 * 22 21 19 24 24 C 1.53876 * 106.59870 * 336.39035 * 23 22 21 25 25 C 1.54261 * 106.59990 * 0.02562 * 24 23 22 26 26 C 1.54852 * 103.58400 * 326.98317 * 16 14 9 27 27 H 0.97004 * 120.00238 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.62526 * 85.55299 * 12 10 9 29 29 H 1.08998 * 110.61946 * 208.41261 * 12 10 9 30 30 H 1.09005 * 111.90859 * 242.54154 * 13 12 10 31 31 H 1.08996 * 110.06887 * 119.02079 * 13 12 10 32 32 H 0.96999 * 120.00906 * 337.20379 * 18 16 14 33 33 H 1.09005 * 110.66972 * 303.23518 * 21 19 18 34 34 H 1.09004 * 110.48613 * 37.65680 * 22 21 19 35 35 H 1.08994 * 110.48745 * 275.01098 * 22 21 19 36 36 H 1.08995 * 110.03032 * 217.10762 * 23 22 21 37 37 H 1.08998 * 110.03405 * 95.67701 * 23 22 21 38 38 H 1.08998 * 110.02768 * 119.28860 * 24 23 22 39 39 H 1.08994 * 110.03051 * 240.71540 * 24 23 22 40 40 H 1.09000 * 110.48928 * 142.28640 * 25 24 23 41 41 H 1.09001 * 110.48691 * 264.79667 * 25 24 23 42 42 H 1.09001 * 110.62698 * 118.56744 * 26 16 14 43 43 H 1.08997 * 110.62876 * 241.59204 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1500 -2.6706 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2761 -3.5954 1.2486 13 6 1.0800 -4.4004 1.2363 14 6 1.8187 -3.8071 -0.0016 15 1 2.9013 -3.9343 -0.0090 16 6 1.0655 -4.3843 -1.2378 17 1 0.8942 -5.4541 -1.1181 18 7 1.8137 -4.1176 -2.4687 19 6 1.6155 -4.8865 -3.5578 20 8 0.8181 -5.7994 -3.5186 21 6 2.3856 -4.6126 -4.8239 22 6 3.8954 -4.8952 -4.6249 23 6 4.4196 -5.1707 -6.0494 24 6 3.2099 -5.6308 -6.8817 25 6 1.9927 -5.6183 -5.9341 26 6 -0.2775 -3.6135 -1.2380 27 1 -0.4851 0.8401 0.0004 28 1 -0.3849 -3.0022 2.1566 29 1 -1.1166 -4.2801 1.1357 30 1 0.9165 -5.4706 1.1092 31 1 1.6408 -4.2024 2.1497 32 1 2.4518 -3.3877 -2.5001 33 1 2.2252 -3.5873 -5.1576 34 1 4.0394 -5.7692 -3.9897 35 1 4.3932 -4.0251 -4.1969 36 1 5.1755 -5.9556 -6.0238 37 1 4.8409 -4.2599 -6.4749 38 1 3.0442 -4.9433 -7.7111 39 1 3.3787 -6.6390 -7.2599 40 1 1.1022 -5.2763 -6.4615 41 1 1.8277 -6.6095 -5.5118 42 1 -0.3868 -3.0328 -2.1539 43 1 -1.1147 -4.3006 -1.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096713360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:19 Heat of formation + Delta-G solvation = -29.017644 kcal Electronic energy + Delta-G solvation = -22681.150366 eV Core-core repulsion = 19532.680908 eV Total energy + Delta-G solvation = -3148.469458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36087 -40.14325 -37.96321 -35.25796 -34.35220 -30.95507 -30.84126 -30.12227 -29.57342 -28.76784 -26.09416 -23.80779 -22.17439 -21.50943 -21.06942 -20.72943 -20.18841 -18.83126 -18.22817 -17.23796 -16.74674 -16.71003 -15.93010 -15.83745 -15.37376 -15.05295 -14.67626 -14.24183 -14.19683 -13.72493 -13.63667 -13.03664 -12.90094 -12.84695 -12.77062 -12.63565 -12.12289 -12.10541 -12.08147 -11.99696 -11.98577 -11.90028 -11.70807 -11.63524 -11.25978 -11.15695 -10.94730 -10.89582 -10.55702 -9.90338 -8.86083 -7.74305 -5.14472 1.50213 1.51947 1.57888 1.70844 2.36522 2.51717 3.38628 3.46274 3.54355 3.66323 3.85385 4.01901 4.06145 4.25586 4.29810 4.42765 4.47355 4.49821 4.52766 4.61204 4.62655 4.64472 4.71780 4.81318 4.83445 4.90825 4.94710 5.06121 5.11512 5.16010 5.18397 5.21701 5.29794 5.36663 5.38731 5.50677 5.52533 5.61670 5.74274 5.89770 6.27721 6.69889 7.06770 7.34187 7.73918 8.60002 9.32825 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.005432 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.889671 B = 5153.848421 C = 6147.294738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.139 3.861 11 H 0.115 0.885 12 C -0.131 4.131 13 C -0.121 4.121 14 C 0.128 3.872 15 H 0.102 0.898 16 C 0.139 3.861 17 H 0.082 0.918 18 N -0.704 5.704 19 C 0.514 3.486 20 O -0.589 6.589 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.105 4.105 26 C -0.133 4.133 27 H 0.245 0.755 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.405 0.595 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -10.059 -8.674 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.208 1.208 7 C -0.344 4.344 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.032 3.968 11 H 0.132 0.868 12 C -0.170 4.170 13 C -0.161 4.161 14 C 0.021 3.979 15 H 0.120 0.880 16 C 0.032 3.968 17 H 0.100 0.900 18 N -0.352 5.352 19 C 0.302 3.698 20 O -0.470 6.470 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.173 4.173 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.241 0.759 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.239 -10.373 -8.634 15.315 hybrid contribution 0.081 1.509 0.248 1.531 sum 7.320 -8.864 -8.386 14.229 Atomic orbital electron populations 1.69721 1.06268 1.24828 1.59065 1.25429 0.96278 1.00371 1.03852 0.85200 0.77007 0.79385 0.77998 1.20383 1.22832 1.20841 1.19328 0.90782 0.82934 1.41334 0.89596 1.46678 1.02133 0.99617 1.84577 1.23632 0.86868 0.95154 0.91117 0.86818 1.23406 0.97123 0.97723 0.98736 1.23342 0.96216 0.98659 0.97844 1.23329 0.97021 0.84644 0.92931 0.88020 1.22414 0.91809 0.98034 0.84567 0.90036 1.46026 1.43353 1.33957 1.11896 1.21104 0.82119 0.80982 0.85579 1.90617 1.38376 1.33252 1.84771 1.22373 0.96850 1.02383 0.92058 1.22328 0.91463 1.02147 0.98733 1.22124 0.97767 1.02202 0.93540 1.22141 0.93475 1.02278 0.97845 1.22193 0.98690 0.98408 0.95004 1.23351 0.96806 0.97957 0.99212 0.94555 0.94091 0.91415 0.89851 0.92165 0.75949 0.87501 0.91930 0.90021 0.90548 0.90405 0.90688 0.90799 0.91886 0.92175 0.94891 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.65 10.46 21.65 0.23 -54.42 16 2 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.22 -11.08 10.59 84.03 0.89 -10.19 16 8 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -28.48 2.99 -614.53 -1.84 -30.32 16 10 C 0.14 6.42 4.67 46.35 0.22 6.64 16 11 H 0.11 6.23 5.52 -2.39 -0.01 6.21 16 12 C -0.13 -5.10 6.58 33.25 0.22 -4.88 16 13 C -0.12 -4.11 6.60 33.26 0.22 -3.89 16 14 C 0.13 4.75 5.00 46.24 0.23 4.98 16 15 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 16 C 0.14 5.07 2.75 46.61 0.13 5.20 16 17 H 0.08 2.95 7.28 -2.39 -0.02 2.94 16 18 N -0.70 -23.69 5.08 -434.91 -2.21 -25.90 16 19 C 0.51 17.00 7.15 87.66 0.63 17.62 16 20 O -0.59 -23.51 15.41 -3.03 -0.05 -23.56 16 21 C -0.12 -2.85 3.28 -10.26 -0.03 -2.89 16 22 C -0.11 -2.14 6.27 31.67 0.20 -1.94 16 23 C -0.12 -1.84 6.80 31.32 0.21 -1.62 16 24 C -0.12 -1.99 6.80 31.32 0.21 -1.77 16 25 C -0.10 -2.43 5.90 31.66 0.19 -2.24 16 26 C -0.13 -5.53 6.27 32.33 0.20 -5.32 16 27 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.32 7.85 -2.39 -0.02 2.31 16 30 H 0.08 2.38 7.81 -2.38 -0.02 2.36 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 13.12 8.64 -92.71 -0.80 12.32 16 33 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.06 1.33 8.05 -2.38 -0.02 1.31 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.61 7.45 -2.39 -0.02 1.59 16 42 H 0.03 1.51 7.98 -2.39 -0.02 1.49 16 43 H 0.06 2.44 7.86 -2.39 -0.02 2.42 16 Total: -1.00 -63.35 334.97 2.33 -61.03 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.19 Total: 30.61 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 3.98 Total: -3.45 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.82 Total: -110.64 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.35 2.33 -61.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096713360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.008 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds