Wall clock time and date at job start Tue Mar 31 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48495 * 109.47370 * 269.99713 * 3 2 1 5 5 H 1.48501 * 109.47339 * 29.99924 * 3 2 1 6 6 H 1.48501 * 109.47050 * 149.99596 * 3 2 1 7 7 C 1.38810 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84184 * 359.97438 * 9 7 2 11 11 H 1.09004 * 115.85506 * 0.38279 * 10 9 7 12 12 C 1.55845 * 101.04491 * 234.00095 * 10 9 7 13 13 C 1.54853 * 103.44679 * 327.05440 * 12 10 9 14 14 C 1.50243 * 130.83640 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85773 * 359.61654 * 14 9 7 16 16 C 1.55842 * 101.05333 * 233.93549 * 14 9 7 17 17 H 1.08999 * 110.75965 * 85.62043 * 16 14 9 18 18 N 1.46498 * 110.62563 * 208.57342 * 16 14 9 19 19 C 1.34777 * 120.00272 * 269.96385 * 18 16 14 20 20 O 1.21284 * 119.99764 * 0.28455 * 19 18 16 21 21 C 1.50699 * 120.00069 * 180.27682 * 19 18 16 22 22 C 1.52996 * 109.47209 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47535 * 180.02562 * 22 21 19 24 24 C 1.52999 * 117.49989 * 243.62549 * 23 22 21 25 25 C 1.53003 * 117.50136 * 174.99926 * 23 22 21 26 26 C 1.54853 * 103.44795 * 327.06638 * 16 14 9 27 27 H 0.97003 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.63206 * 85.55176 * 12 10 9 29 29 H 1.09009 * 110.62003 * 208.56759 * 12 10 9 30 30 H 1.08994 * 110.62885 * 241.51161 * 13 12 10 31 31 H 1.09008 * 110.61887 * 118.49659 * 13 12 10 32 32 H 0.97007 * 119.99842 * 90.25055 * 18 16 14 33 33 H 1.09002 * 109.46940 * 300.00472 * 21 19 18 34 34 H 1.09001 * 109.47008 * 60.00284 * 21 19 18 35 35 H 1.09000 * 109.46976 * 300.00373 * 22 21 19 36 36 H 1.09001 * 109.47278 * 59.99991 * 22 21 19 37 37 H 1.09002 * 115.54705 * 29.32899 * 23 22 21 38 38 H 1.09000 * 117.49949 * 359.97438 * 24 23 22 39 39 H 1.09000 * 117.50017 * 145.02072 * 24 23 22 40 40 H 1.09003 * 117.49938 * 214.98307 * 25 23 22 41 41 H 1.08993 * 117.49863 * 359.97438 * 25 23 22 42 42 H 1.08999 * 110.62669 * 118.48467 * 26 16 14 43 43 H 1.08996 * 110.62542 * 241.51179 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1500 -2.6706 0.0005 11 1 -0.8014 -1.7966 -0.0060 12 6 -0.2742 -3.6097 1.2380 13 6 1.0669 -4.3841 1.2384 14 6 1.8187 -3.8072 0.0016 15 1 2.9013 -3.9343 -0.0041 16 6 1.0672 -4.3856 -1.2352 17 1 1.6240 -4.1903 -2.1516 18 7 0.8335 -5.8225 -1.0715 19 6 1.7480 -6.7086 -1.5128 20 8 2.7669 -6.3163 -2.0409 21 6 1.5047 -8.1869 -1.3500 22 6 2.6873 -8.9654 -1.9298 23 6 2.4400 -10.4662 -1.7651 24 6 3.4046 -11.2471 -0.8703 25 6 3.4581 -11.4227 -2.3894 26 6 -0.2738 -3.6113 -1.2361 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3816 -3.0272 2.1530 29 1 -1.1133 -4.2951 1.1172 30 1 0.8929 -5.4533 1.1179 31 1 1.6245 -4.1854 2.1537 32 1 0.0185 -6.1363 -0.6491 33 1 1.3985 -8.4232 -0.2912 34 1 0.5924 -8.4652 -1.8776 35 1 2.7939 -8.7291 -2.9885 36 1 3.5994 -8.6870 -1.4018 37 1 1.3942 -10.7732 -1.7667 38 1 4.2157 -10.6917 -0.3993 39 1 2.9934 -12.0682 -0.2830 40 1 3.0820 -12.3591 -2.8014 41 1 4.3038 -10.9827 -2.9177 42 1 -0.3808 -3.0298 -2.1518 43 1 -1.1128 -4.2964 -1.1148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109093823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:54 Heat of formation + Delta-G solvation = 5.090905 kcal Electronic energy + Delta-G solvation = -22043.266910 eV Core-core repulsion = 18896.276510 eV Total energy + Delta-G solvation = -3146.990400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45669 -39.90774 -38.28822 -35.41858 -34.21019 -33.08349 -31.01061 -30.70028 -29.23581 -26.45366 -25.48918 -23.18203 -22.82014 -21.82392 -21.24821 -21.03832 -20.12655 -18.93017 -17.91544 -16.89971 -16.84196 -16.68876 -16.19979 -16.04846 -15.65490 -15.19514 -14.60139 -14.36202 -14.03493 -13.81898 -13.47098 -13.26111 -12.95343 -12.89150 -12.79101 -12.58710 -12.40043 -12.36077 -12.18660 -12.07478 -12.00352 -11.90159 -11.56456 -11.21193 -11.14320 -11.04146 -10.77951 -10.75077 -10.64897 -9.93750 -8.85977 -7.80740 -5.20004 1.44974 1.46402 1.54516 1.77207 2.28032 2.50759 2.96405 3.32587 3.51266 3.76330 3.87305 3.96945 4.09200 4.10624 4.14139 4.17313 4.38183 4.42962 4.45522 4.52055 4.61875 4.66322 4.71928 4.82402 4.84216 4.84737 4.98958 5.07688 5.09865 5.11840 5.15555 5.20704 5.27064 5.31795 5.33818 5.46878 5.49766 5.57184 5.78439 5.89648 6.27478 6.73068 7.04952 7.42995 7.68208 8.54440 9.26073 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.003527 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.121489 B = 7936.550009 C = 8225.800629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.226 4.226 8 H 0.069 0.931 9 N -0.620 5.620 10 C 0.137 3.863 11 H 0.120 0.880 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.117 3.883 15 H 0.062 0.938 16 C 0.145 3.855 17 H 0.047 0.953 18 N -0.700 5.700 19 C 0.502 3.498 20 O -0.597 6.597 21 C -0.124 4.124 22 C -0.073 4.073 23 C -0.151 4.151 24 C -0.182 4.182 25 C -0.188 4.188 26 C -0.126 4.126 27 H 0.249 0.751 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.416 0.584 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -22.135 -0.470 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.342 5.342 10 C 0.031 3.969 11 H 0.137 0.863 12 C -0.163 4.163 13 C -0.154 4.154 14 C 0.009 3.991 15 H 0.080 0.920 16 C 0.037 3.963 17 H 0.066 0.934 18 N -0.352 5.352 19 C 0.291 3.709 20 O -0.478 6.478 21 C -0.163 4.163 22 C -0.111 4.111 23 C -0.169 4.169 24 C -0.219 4.219 25 C -0.225 4.225 26 C -0.166 4.166 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.254 0.746 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.744 -21.532 -0.828 21.619 hybrid contribution 0.562 1.402 0.002 1.511 sum -1.181 -20.130 -0.827 20.182 Atomic orbital electron populations 1.69670 1.05845 1.25077 1.58724 1.25413 0.96586 1.00171 1.03434 0.85109 0.77548 0.79575 0.77286 1.21664 1.21589 1.20163 1.19297 0.90450 0.83693 1.42077 0.91283 1.46758 1.03145 0.99487 1.84820 1.23711 0.85833 0.95528 0.91861 0.86274 1.22934 0.96995 0.97959 0.98456 1.22805 0.96421 0.99498 0.96710 1.23331 0.95648 0.84840 0.95301 0.91969 1.22030 0.97010 0.79778 0.97456 0.93426 1.46029 1.23263 1.05112 1.60828 1.21583 0.82447 0.90338 0.76580 1.90691 1.29378 1.81966 1.45738 1.21674 1.01521 0.87587 1.05543 1.20842 0.97285 0.92307 1.00640 1.22344 0.97488 0.91805 1.05277 1.23111 1.02212 1.03321 0.93247 1.23038 1.01830 1.01558 0.96096 1.23136 0.95573 0.98244 0.99631 0.94102 0.94676 0.89167 0.89051 0.94062 0.74626 0.86261 0.85933 0.92733 0.93201 0.85710 0.89582 0.87456 0.87540 0.89745 0.93910 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.25 10.47 21.65 0.23 -55.02 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.23 -13.04 10.59 84.03 0.89 -12.15 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.62 -31.92 2.99 -615.23 -1.84 -33.76 16 10 C 0.14 6.14 4.72 46.24 0.22 6.36 16 11 H 0.12 6.29 5.52 -2.39 -0.01 6.27 16 12 C -0.12 -4.48 6.44 32.21 0.21 -4.27 16 13 C -0.12 -3.98 6.32 32.20 0.20 -3.77 16 14 C 0.12 4.97 5.35 46.22 0.25 5.21 16 15 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 16 C 0.14 5.36 3.14 46.61 0.15 5.50 16 17 H 0.05 2.10 7.58 -2.39 -0.02 2.09 16 18 N -0.70 -18.26 3.70 -434.92 -1.61 -19.87 16 19 C 0.50 13.80 7.83 87.66 0.69 14.49 16 20 O -0.60 -23.09 15.65 -3.04 -0.05 -23.13 16 21 C -0.12 -2.03 5.66 29.85 0.17 -1.86 16 22 C -0.07 -1.41 4.78 30.59 0.15 -1.26 16 23 C -0.15 -2.13 5.74 -10.79 -0.06 -2.19 16 24 C -0.18 -2.49 10.18 30.60 0.31 -2.18 16 25 C -0.19 -2.66 10.25 30.60 0.31 -2.35 16 26 C -0.13 -4.64 6.20 32.22 0.20 -4.44 16 27 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 2.45 7.82 -2.38 -0.02 2.43 16 30 H 0.09 2.41 6.39 -2.39 -0.02 2.40 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.42 7.51 7.92 -92.70 -0.73 6.77 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.05 1.17 7.83 -2.39 -0.02 1.15 16 37 H 0.12 1.27 8.07 -2.39 -0.02 1.25 16 38 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 2.71 7.38 -2.39 -0.02 2.70 16 Total: -1.00 -71.79 340.44 3.16 -68.63 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.26 Total: 20.48 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 4.14 Total: -6.07 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.22 Total: -108.65 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -71.79 3.16 -68.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109093823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.719 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds