Wall clock time and date at job start Tue Mar 31 2020 00:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48505 * 109.47134 * 274.08362 * 3 2 1 5 5 H 1.48504 * 109.47227 * 34.08119 * 3 2 1 6 6 H 1.48497 * 109.47496 * 154.08580 * 3 2 1 7 7 C 1.38814 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 188.99959 * 7 2 1 9 9 N 1.36933 * 120.00154 * 8.99493 * 7 2 1 10 10 C 1.50238 * 130.83722 * 5.07471 * 9 7 2 11 11 H 1.08995 * 116.46128 * 0.02562 * 10 9 7 12 12 C 1.55848 * 101.04618 * 233.98076 * 10 9 7 13 13 C 1.54844 * 103.44972 * 327.06256 * 12 10 9 14 14 C 1.50245 * 130.83891 * 185.09196 * 9 7 2 15 15 H 1.08993 * 116.45781 * 359.97438 * 14 9 7 16 16 C 1.55845 * 101.04997 * 233.95025 * 14 9 7 17 17 H 1.08996 * 110.76335 * 208.50410 * 16 14 9 18 18 N 1.46508 * 110.62455 * 85.55381 * 16 14 9 19 19 C 1.34767 * 119.99772 * 159.24495 * 18 16 14 20 20 O 1.21290 * 120.00396 * 0.27489 * 19 18 16 21 21 C 1.50701 * 120.00086 * 180.27500 * 19 18 16 22 22 C 1.53006 * 109.47341 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.46827 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.50127 * 243.62366 * 23 22 21 25 25 C 1.53006 * 60.00254 * 252.51465 * 24 23 22 26 26 C 1.54854 * 103.44860 * 327.06558 * 16 14 9 27 27 H 0.97003 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.62460 * 85.55741 * 12 10 9 29 29 H 1.08999 * 110.62756 * 208.56680 * 12 10 9 30 30 H 1.08996 * 110.63101 * 118.48714 * 13 12 10 31 31 H 1.09000 * 110.62672 * 241.35260 * 13 12 10 32 32 H 0.96998 * 119.99711 * 339.51931 * 18 16 14 33 33 H 1.08998 * 109.47442 * 300.00194 * 21 19 18 34 34 H 1.08999 * 109.46946 * 59.99724 * 21 19 18 35 35 H 1.08992 * 109.47078 * 300.00253 * 22 21 19 36 36 H 1.09007 * 109.46824 * 60.00332 * 22 21 19 37 37 H 1.09000 * 115.55530 * 29.33515 * 23 22 21 38 38 H 1.09005 * 117.49888 * 0.02562 * 24 23 22 39 39 H 1.09002 * 117.50208 * 145.02472 * 24 23 22 40 40 H 1.08998 * 117.49362 * 252.51063 * 25 24 23 41 41 H 1.08999 * 117.50202 * 107.48810 * 25 24 23 42 42 H 1.08999 * 110.62455 * 118.48702 * 26 16 14 43 43 H 1.09001 * 110.62158 * 241.50943 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4114 2.0962 -1.3966 5 1 1.4935 2.6262 0.7846 6 1 3.5882 1.4168 0.6118 7 6 2.0102 -1.2022 -0.0005 8 1 3.0802 -1.2081 0.1458 9 7 1.3382 -2.3807 -0.1865 10 6 -0.1048 -2.6487 -0.5074 11 1 -0.7483 -1.7758 -0.6167 12 6 -0.4894 -3.6283 0.6420 13 6 0.8195 -4.4151 0.8978 14 6 1.8168 -3.8038 -0.1320 15 1 2.8733 -3.9526 0.0909 16 6 1.3415 -4.3321 -1.5189 17 1 1.1438 -5.4032 -1.4774 18 7 2.3345 -4.0320 -2.5535 19 6 2.3435 -4.7353 -3.7031 20 8 1.5263 -5.6133 -3.8834 21 6 3.3688 -4.4308 -4.7647 22 6 3.1606 -5.3656 -5.9580 23 6 4.2013 -5.0560 -7.0359 24 6 3.6912 -4.5392 -8.3826 25 6 4.2353 -5.9645 -8.2666 26 6 0.0325 -3.5453 -1.7747 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7862 -3.0763 1.5338 29 1 -1.2857 -4.3009 0.3231 30 1 1.1721 -4.2532 1.9164 31 1 0.6717 -5.4783 0.7082 32 1 2.9880 -3.3299 -2.4093 33 1 3.2591 -3.3962 -5.0898 34 1 4.3688 -4.5795 -4.3572 35 1 3.2707 -6.4000 -5.6326 36 1 2.1606 -5.2173 -6.3656 37 1 5.1515 -4.6640 -6.6734 38 1 2.6142 -4.4194 -8.5005 39 1 4.3057 -3.8069 -8.9062 40 1 5.2079 -6.1698 -8.7138 41 1 3.5164 -6.7827 -8.3082 42 1 0.1222 -2.9319 -2.6712 43 1 -0.8148 -4.2261 -1.8571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110402961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:57 Heat of formation + Delta-G solvation = 16.753313 kcal Electronic energy + Delta-G solvation = -22077.895606 eV Core-core repulsion = 18931.410926 eV Total energy + Delta-G solvation = -3146.484680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.80918 -38.54905 -37.46660 -33.72091 -32.55833 -32.09775 -29.12607 -28.85851 -27.81474 -24.90270 -24.10761 -22.51950 -21.36257 -20.45148 -19.86046 -19.61011 -18.62275 -17.00481 -16.59518 -15.95151 -15.67876 -15.10832 -14.80935 -14.37364 -14.00411 -13.75644 -13.53675 -13.10838 -12.76589 -12.14564 -12.02216 -11.86465 -11.71218 -11.41631 -11.26136 -11.16566 -11.11741 -10.95383 -10.90007 -10.50338 -10.43050 -10.34574 -10.09314 -9.98785 -9.94789 -9.64624 -9.28553 -9.07384 -8.89973 -8.43605 -6.95536 -5.78289 -3.14351 3.04083 3.34921 3.39944 3.42656 3.58491 3.72785 4.39587 4.58032 4.75667 4.80865 4.98042 5.12286 5.23378 5.31525 5.36830 5.45829 5.48190 5.65000 5.68979 5.72177 5.77698 5.87977 5.90862 5.96297 6.05920 6.09788 6.12361 6.16531 6.29973 6.32577 6.43359 6.49700 6.61364 6.76902 6.83305 6.95938 7.15170 7.33265 7.46810 7.77223 8.04421 8.11327 8.68375 9.03942 9.68344 10.50929 11.32844 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004489 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.749344 B = 6236.131224 C = 7348.860288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.159 3.841 11 H 0.144 0.856 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.125 3.875 15 H 0.087 0.913 16 C 0.130 3.870 17 H 0.077 0.923 18 N -0.708 5.708 19 C 0.507 3.493 20 O -0.556 6.556 21 C -0.138 4.138 22 C -0.071 4.071 23 C -0.153 4.153 24 C -0.182 4.182 25 C -0.183 4.183 26 C -0.144 4.144 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -8.933 -9.313 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.052 3.948 11 H 0.161 0.839 12 C -0.175 4.175 13 C -0.169 4.169 14 C 0.017 3.983 15 H 0.105 0.895 16 C 0.023 3.977 17 H 0.095 0.905 18 N -0.357 5.357 19 C 0.293 3.707 20 O -0.435 6.435 21 C -0.179 4.179 22 C -0.109 4.109 23 C -0.171 4.171 24 C -0.219 4.219 25 C -0.220 4.220 26 C -0.184 4.184 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.967 -9.206 -9.377 14.432 hybrid contribution 0.790 1.242 0.113 1.476 sum 6.757 -7.964 -9.263 13.960 Atomic orbital electron populations 1.69625 1.05037 1.25083 1.56578 1.24711 0.95551 0.97532 1.02706 0.86092 0.78583 0.83542 0.77461 1.21728 1.21808 1.20722 1.18994 0.90943 0.82241 1.42307 0.90415 1.46513 1.05476 0.98648 1.80362 1.23513 0.87340 0.95161 0.88791 0.83909 1.23030 0.95399 0.98023 1.01072 1.22878 0.97361 0.97467 0.99168 1.23136 0.96292 0.87008 0.91875 0.89455 1.22606 0.88823 0.98170 0.88065 0.90533 1.46058 1.35064 1.37612 1.16960 1.20630 0.85373 0.81628 0.83027 1.90654 1.40713 1.32791 1.79329 1.21648 0.99031 1.02079 0.95097 1.20891 0.97878 0.99393 0.92751 1.22380 1.00802 1.04318 0.89574 1.23049 1.01399 0.96999 1.00464 1.22954 1.02642 0.94046 1.02320 1.23459 0.95571 0.98461 1.00938 0.93594 0.92427 0.93440 0.92484 0.93082 0.76380 0.88958 0.89235 0.90962 0.91129 0.87790 0.88728 0.89026 0.89030 0.88798 0.92426 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.67 10.64 55.49 0.59 -25.08 16 2 C -0.01 -0.23 5.47 -17.43 -0.10 -0.33 16 3 Si 0.91 21.22 29.56 -169.99 -5.03 16.20 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.22 -5.62 10.56 -15.06 -0.16 -5.78 16 8 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.59 -13.86 2.98 -145.81 -0.44 -14.30 16 10 C 0.16 3.61 4.65 -62.80 -0.29 3.32 16 11 H 0.14 3.73 5.76 -51.93 -0.30 3.43 16 12 C -0.14 -2.73 6.44 -24.24 -0.16 -2.89 16 13 C -0.13 -2.36 6.44 -24.24 -0.16 -2.52 16 14 C 0.13 2.43 5.04 -62.80 -0.32 2.11 16 15 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 16 C 0.13 2.41 2.73 -65.43 -0.18 2.23 16 17 H 0.08 1.44 7.36 -51.93 -0.38 1.06 16 18 N -0.71 -11.88 5.10 -51.39 -0.26 -12.15 16 19 C 0.51 8.25 7.83 -10.99 -0.09 8.16 16 20 O -0.56 -10.89 15.70 5.55 0.09 -10.81 16 21 C -0.14 -1.66 5.66 -27.88 -0.16 -1.82 16 22 C -0.07 -0.83 4.79 -26.73 -0.13 -0.96 16 23 C -0.15 -1.47 5.74 -90.62 -0.52 -1.99 16 24 C -0.18 -1.66 10.18 -26.73 -0.27 -1.93 16 25 C -0.18 -1.61 10.25 -26.72 -0.27 -1.88 16 26 C -0.14 -2.94 6.23 -24.23 -0.15 -3.09 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 32 H 0.40 6.40 8.62 -40.82 -0.35 6.05 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.92 7.83 -51.92 -0.41 0.51 16 37 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.26 7.98 -51.93 -0.41 0.85 16 43 H 0.05 1.04 7.82 -51.93 -0.41 0.64 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -29.48 343.80 -10.06 -39.54 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.26 Total: 8.78 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.94 Total: -7.36 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.11 Total: -51.53 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.48 -10.06 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110402961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.295 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds