Wall clock time and date at job start Tue Mar 31 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48505 * 109.47134 * 274.08362 * 3 2 1 5 5 H 1.48504 * 109.47227 * 34.08119 * 3 2 1 6 6 H 1.48497 * 109.47496 * 154.08580 * 3 2 1 7 7 C 1.38814 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 188.99959 * 7 2 1 9 9 N 1.36933 * 120.00154 * 8.99493 * 7 2 1 10 10 C 1.50238 * 130.83722 * 5.07471 * 9 7 2 11 11 H 1.08995 * 116.46128 * 0.02562 * 10 9 7 12 12 C 1.55848 * 101.04618 * 233.98076 * 10 9 7 13 13 C 1.54844 * 103.44972 * 327.06256 * 12 10 9 14 14 C 1.50245 * 130.83891 * 185.09196 * 9 7 2 15 15 H 1.08993 * 116.45781 * 359.97438 * 14 9 7 16 16 C 1.55845 * 101.04997 * 233.95025 * 14 9 7 17 17 H 1.08996 * 110.76335 * 208.50410 * 16 14 9 18 18 N 1.46508 * 110.62455 * 85.55381 * 16 14 9 19 19 C 1.34767 * 119.99772 * 159.24495 * 18 16 14 20 20 O 1.21290 * 120.00396 * 0.27489 * 19 18 16 21 21 C 1.50701 * 120.00086 * 180.27500 * 19 18 16 22 22 C 1.53006 * 109.47341 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.46827 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.50127 * 243.62366 * 23 22 21 25 25 C 1.53006 * 60.00254 * 252.51465 * 24 23 22 26 26 C 1.54854 * 103.44860 * 327.06558 * 16 14 9 27 27 H 0.97003 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.62460 * 85.55741 * 12 10 9 29 29 H 1.08999 * 110.62756 * 208.56680 * 12 10 9 30 30 H 1.08996 * 110.63101 * 118.48714 * 13 12 10 31 31 H 1.09000 * 110.62672 * 241.35260 * 13 12 10 32 32 H 0.96998 * 119.99711 * 339.51931 * 18 16 14 33 33 H 1.08998 * 109.47442 * 300.00194 * 21 19 18 34 34 H 1.08999 * 109.46946 * 59.99724 * 21 19 18 35 35 H 1.08992 * 109.47078 * 300.00253 * 22 21 19 36 36 H 1.09007 * 109.46824 * 60.00332 * 22 21 19 37 37 H 1.09000 * 115.55530 * 29.33515 * 23 22 21 38 38 H 1.09005 * 117.49888 * 0.02562 * 24 23 22 39 39 H 1.09002 * 117.50208 * 145.02472 * 24 23 22 40 40 H 1.08998 * 117.49362 * 252.51063 * 25 24 23 41 41 H 1.08999 * 117.50202 * 107.48810 * 25 24 23 42 42 H 1.08999 * 110.62455 * 118.48702 * 26 16 14 43 43 H 1.09001 * 110.62158 * 241.50943 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4114 2.0962 -1.3966 5 1 1.4935 2.6262 0.7846 6 1 3.5882 1.4168 0.6118 7 6 2.0102 -1.2022 -0.0005 8 1 3.0802 -1.2081 0.1458 9 7 1.3382 -2.3807 -0.1865 10 6 -0.1048 -2.6487 -0.5074 11 1 -0.7483 -1.7758 -0.6167 12 6 -0.4894 -3.6283 0.6420 13 6 0.8195 -4.4151 0.8978 14 6 1.8168 -3.8038 -0.1320 15 1 2.8733 -3.9526 0.0909 16 6 1.3415 -4.3321 -1.5189 17 1 1.1438 -5.4032 -1.4774 18 7 2.3345 -4.0320 -2.5535 19 6 2.3435 -4.7353 -3.7031 20 8 1.5263 -5.6133 -3.8834 21 6 3.3688 -4.4308 -4.7647 22 6 3.1606 -5.3656 -5.9580 23 6 4.2013 -5.0560 -7.0359 24 6 3.6912 -4.5392 -8.3826 25 6 4.2353 -5.9645 -8.2666 26 6 0.0325 -3.5453 -1.7747 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7862 -3.0763 1.5338 29 1 -1.2857 -4.3009 0.3231 30 1 1.1721 -4.2532 1.9164 31 1 0.6717 -5.4783 0.7082 32 1 2.9880 -3.3299 -2.4093 33 1 3.2591 -3.3962 -5.0898 34 1 4.3688 -4.5795 -4.3572 35 1 3.2707 -6.4000 -5.6326 36 1 2.1606 -5.2173 -6.3656 37 1 5.1515 -4.6640 -6.6734 38 1 2.6142 -4.4194 -8.5005 39 1 4.3057 -3.8069 -8.9062 40 1 5.2079 -6.1698 -8.7138 41 1 3.5164 -6.7827 -8.3082 42 1 0.1222 -2.9319 -2.6712 43 1 -0.8148 -4.2261 -1.8571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110402961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:56 Heat of formation + Delta-G solvation = 0.587903 kcal Electronic energy + Delta-G solvation = -22078.596591 eV Core-core repulsion = 18931.410926 eV Total energy + Delta-G solvation = -3147.185665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28839 -39.95974 -38.31581 -35.23544 -34.38884 -33.12842 -30.97440 -30.43775 -29.36245 -26.27914 -25.70070 -23.20637 -22.78757 -21.55352 -21.28384 -21.01144 -20.24213 -18.83125 -17.85291 -17.27053 -16.75560 -16.69793 -16.11504 -15.77796 -15.54473 -15.04056 -14.92363 -14.37551 -14.14415 -13.72061 -13.65138 -13.04180 -12.92302 -12.84202 -12.76493 -12.68056 -12.41690 -12.22045 -12.10144 -12.09085 -11.93513 -11.89273 -11.71849 -11.26532 -11.17567 -10.96456 -10.81264 -10.76506 -10.54362 -9.89755 -8.86071 -7.77708 -5.14169 1.50308 1.50859 1.59147 1.75512 2.37735 2.51762 2.94553 3.37522 3.44573 3.73608 3.86726 4.01845 4.06491 4.09011 4.11739 4.27423 4.34531 4.43012 4.46114 4.49906 4.61353 4.65333 4.70320 4.81210 4.82038 4.83640 4.91824 5.07356 5.08527 5.09537 5.16241 5.17575 5.20459 5.29727 5.38454 5.45930 5.53851 5.62691 5.75458 5.89871 6.22259 6.72826 7.04816 7.37980 7.72949 8.60017 9.32375 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004489 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.749344 B = 6236.131224 C = 7348.860288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.215 4.215 8 H 0.088 0.912 9 N -0.608 5.608 10 C 0.145 3.855 11 H 0.105 0.895 12 C -0.130 4.130 13 C -0.121 4.121 14 C 0.128 3.872 15 H 0.106 0.894 16 C 0.141 3.859 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.504 3.496 20 O -0.591 6.591 21 C -0.129 4.129 22 C -0.067 4.067 23 C -0.156 4.156 24 C -0.186 4.186 25 C -0.180 4.180 26 C -0.134 4.134 27 H 0.244 0.756 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.407 0.593 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.034 0.966 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 -10.013 -9.833 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.344 4.344 8 H 0.105 0.895 9 N -0.330 5.330 10 C 0.038 3.962 11 H 0.123 0.877 12 C -0.169 4.169 13 C -0.161 4.161 14 C 0.021 3.979 15 H 0.124 0.876 16 C 0.034 3.966 17 H 0.101 0.899 18 N -0.356 5.356 19 C 0.293 3.707 20 O -0.473 6.473 21 C -0.169 4.169 22 C -0.105 4.105 23 C -0.174 4.174 24 C -0.223 4.223 25 C -0.216 4.216 26 C -0.174 4.174 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.251 -10.313 -9.901 16.506 hybrid contribution 0.056 1.517 0.256 1.540 sum 8.307 -8.796 -9.645 15.472 Atomic orbital electron populations 1.69859 1.06353 1.24874 1.58618 1.25446 0.96247 1.00474 1.03857 0.85132 0.77868 0.79819 0.76924 1.21956 1.23081 1.19173 1.19373 0.91541 0.83225 1.40231 0.89469 1.46698 1.05946 0.99811 1.80512 1.23352 0.86979 0.94905 0.90955 0.87720 1.22932 0.97218 0.97768 0.99020 1.22840 0.95605 0.98771 0.98845 1.23337 0.97534 0.84579 0.92454 0.87637 1.22377 0.88174 0.97875 0.88179 0.89948 1.46042 1.34728 1.37895 1.16967 1.21365 0.85514 0.80614 0.83226 1.90638 1.42334 1.34358 1.79933 1.21669 0.98897 1.02595 0.93708 1.20805 0.97609 0.98804 0.93253 1.22346 1.00731 1.05174 0.89174 1.23110 1.01244 0.97681 1.00239 1.23035 1.03301 0.93719 1.01588 1.23317 0.97340 0.98047 0.98719 0.94613 0.94594 0.91306 0.92398 0.90055 0.75726 0.87883 0.86369 0.91929 0.93145 0.86249 0.89550 0.87764 0.87460 0.89230 0.94680 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.80 10.64 21.65 0.23 -54.57 16 2 C -0.07 -3.64 5.47 84.86 0.46 -3.17 16 3 Si 0.97 43.97 29.56 68.60 2.03 46.00 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.21 -11.04 10.56 84.03 0.89 -10.15 16 8 H 0.09 4.21 7.84 -2.91 -0.02 4.18 16 9 N -0.61 -28.31 2.98 -615.23 -1.84 -30.15 16 10 C 0.14 6.67 4.65 46.23 0.21 6.88 16 11 H 0.11 5.72 5.76 -2.39 -0.01 5.70 16 12 C -0.13 -5.14 6.44 32.21 0.21 -4.93 16 13 C -0.12 -4.15 6.44 32.21 0.21 -3.94 16 14 C 0.13 4.69 5.04 46.23 0.23 4.92 16 15 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 16 C 0.14 4.99 2.73 46.61 0.13 5.12 16 17 H 0.08 2.89 7.36 -2.39 -0.02 2.87 16 18 N -0.71 -22.50 5.10 -434.90 -2.22 -24.71 16 19 C 0.50 15.63 7.83 87.66 0.69 16.31 16 20 O -0.59 -22.66 15.70 -3.06 -0.05 -22.71 16 21 C -0.13 -2.80 5.66 29.85 0.17 -2.63 16 22 C -0.07 -1.47 4.79 30.59 0.15 -1.32 16 23 C -0.16 -2.66 5.74 -10.79 -0.06 -2.72 16 24 C -0.19 -3.05 10.18 30.60 0.31 -2.74 16 25 C -0.18 -2.80 10.25 30.60 0.31 -2.48 16 26 C -0.13 -5.44 6.23 32.21 0.20 -5.24 16 27 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.33 7.83 -2.39 -0.02 2.31 16 32 H 0.41 12.13 8.62 -92.71 -0.80 11.33 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.05 1.29 7.83 -2.38 -0.02 1.28 16 37 H 0.12 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.09 1.55 8.03 -2.38 -0.02 1.53 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.03 1.55 7.98 -2.39 -0.02 1.53 16 43 H 0.06 2.42 7.82 -2.39 -0.02 2.40 16 Total: -1.00 -64.26 343.80 2.45 -61.81 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.19 Total: 30.43 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.11 Total: -6.09 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.82 Total: -109.43 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.26 2.45 -61.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110402961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.394 kcal (2) G-P(sol) polarization free energy of solvation -64.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds