Wall clock time and date at job start Tue Mar 31 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48503 * 109.46884 * 270.00411 * 3 2 1 5 5 H 1.48501 * 109.47028 * 29.99717 * 3 2 1 6 6 H 1.48498 * 109.47386 * 150.00039 * 3 2 1 7 7 C 1.38813 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00161 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47265 * 180.02562 * 10 9 7 12 12 C 1.54160 * 111.82155 * 298.98843 * 11 10 9 13 13 C 1.54842 * 104.32818 * 213.80204 * 12 11 10 14 14 C 1.54846 * 102.73521 * 38.18699 * 13 12 11 15 15 C 1.54166 * 104.43723 * 321.74826 * 14 13 12 16 16 H 1.09003 * 111.81915 * 146.26653 * 15 14 13 17 17 C 1.54328 * 108.86037 * 271.30439 * 15 14 13 18 18 N 1.48124 * 104.69247 * 137.45277 * 17 15 14 19 19 C 1.34773 * 127.84142 * 140.28507 * 18 17 15 20 20 O 1.21281 * 119.99758 * 179.97438 * 19 18 17 21 21 C 1.50702 * 120.00251 * 359.97438 * 19 18 17 22 22 C 1.52999 * 117.49632 * 248.61748 * 21 19 18 23 23 C 1.52994 * 59.99933 * 252.51180 * 22 21 19 24 24 C 1.50251 * 104.83059 * 320.58388 * 18 17 15 25 25 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00327 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46812 * 59.99955 * 10 9 7 28 28 H 1.08994 * 109.47344 * 300.00051 * 10 9 7 29 29 H 1.08997 * 110.46381 * 95.09052 * 12 11 10 30 30 H 1.08998 * 110.57036 * 332.56490 * 12 11 10 31 31 H 1.09009 * 110.75812 * 279.87919 * 13 12 11 32 32 H 1.08997 * 110.92318 * 156.57041 * 13 12 11 33 33 H 1.09002 * 110.46114 * 80.52355 * 14 13 12 34 34 H 1.09006 * 110.46207 * 202.97480 * 14 13 12 35 35 H 1.08998 * 110.39244 * 256.25868 * 17 15 14 36 36 H 1.09003 * 110.39230 * 18.64931 * 17 15 14 37 37 H 1.08997 * 115.54714 * 34.32418 * 21 19 18 38 38 H 1.09001 * 117.49758 * 0.02562 * 22 21 19 39 39 H 1.08996 * 117.49707 * 145.01389 * 22 21 19 40 40 H 1.09004 * 117.49814 * 252.50827 * 23 22 21 41 41 H 1.08999 * 117.51871 * 107.48454 * 23 22 21 42 42 H 1.08997 * 110.28916 * 280.55427 * 24 18 17 43 43 H 1.09001 * 111.29261 * 157.61791 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 6 0.1647 -4.8042 1.2544 13 6 -0.0853 -6.3004 1.5652 14 6 1.2835 -6.9491 1.2439 15 6 1.7820 -6.1961 -0.0055 16 1 2.8669 -6.0912 -0.0094 17 6 1.2510 -6.9129 -1.2649 18 7 0.8130 -5.8194 -2.1630 19 6 0.9623 -5.7376 -3.4999 20 8 0.5453 -4.7687 -4.0985 21 6 1.6473 -6.8501 -4.2511 22 6 3.0145 -6.5485 -4.8680 23 6 1.7857 -6.6980 -5.7672 24 6 0.1685 -4.8107 -1.2548 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0023 27 1 2.6853 -3.7141 0.8912 28 1 2.6839 -3.7150 -0.8888 29 1 -0.7763 -4.2969 1.0417 30 1 0.6765 -4.3225 2.0875 31 1 -0.8652 -6.7041 0.9193 32 1 -0.3432 -6.4422 2.6147 33 1 1.9756 -6.8095 2.0744 34 1 1.1606 -8.0100 1.0257 35 1 2.0446 -7.4946 -1.7338 36 1 0.4082 -7.5552 -1.0094 37 1 1.4820 -7.8535 -3.8589 38 1 3.4187 -5.5457 -4.7302 39 1 3.7491 -7.3536 -4.8816 40 1 1.7119 -7.6015 -6.3725 41 1 1.3810 -5.7936 -6.2214 42 1 -0.8447 -5.1229 -1.0017 43 1 0.1594 -3.8193 -1.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112227622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:39 Heat of formation + Delta-G solvation = -0.103588 kcal Electronic energy + Delta-G solvation = -22650.821996 eV Core-core repulsion = 19503.606346 eV Total energy + Delta-G solvation = -3147.215650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47187 -38.92621 -35.98658 -34.65020 -34.22802 -31.63993 -29.76892 -29.08236 -26.27792 -25.47927 -24.08181 -22.95058 -22.48483 -21.94054 -20.10550 -18.93747 -18.40369 -17.39155 -16.86439 -15.97472 -15.44095 -15.17618 -14.77489 -14.45364 -14.10242 -13.85235 -13.37017 -13.14055 -13.00965 -12.82639 -12.66255 -12.31089 -11.84138 -11.62737 -11.59536 -11.13868 -10.87703 -10.80639 -10.77019 -10.70966 -10.61689 -10.54170 -10.43087 -10.30818 -10.22243 -9.91084 -9.60382 -9.55061 -8.81852 -8.48500 -6.85853 -5.70788 -2.98856 2.67208 3.04407 3.48085 3.52864 3.54309 3.83877 4.40417 4.49285 4.65526 4.69689 4.78325 4.80111 4.83963 5.04666 5.19853 5.31739 5.35304 5.41605 5.49343 5.54769 5.59874 5.61818 5.66186 5.69565 5.80846 5.87661 5.94922 6.02525 6.05578 6.08399 6.20397 6.24747 6.31509 6.32718 6.52957 6.56243 6.65273 6.80747 6.88123 7.75151 7.79093 8.39640 8.48034 9.59377 10.16679 10.51637 11.52210 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.005796 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.874495 B = 4829.605083 C = 6187.265551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.173 3.827 11 C -0.075 4.075 12 C -0.106 4.106 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.098 4.098 16 H 0.088 0.912 17 C 0.111 3.889 18 N -0.620 5.620 19 C 0.558 3.442 20 O -0.536 6.536 21 C -0.189 4.189 22 C -0.153 4.153 23 C -0.150 4.150 24 C 0.117 3.883 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -20.410 -2.041 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.046 3.954 11 C -0.076 4.076 12 C -0.144 4.144 13 C -0.163 4.163 14 C -0.152 4.152 15 C -0.117 4.117 16 H 0.107 0.893 17 C -0.013 4.013 18 N -0.354 5.354 19 C 0.346 3.654 20 O -0.413 6.413 21 C -0.210 4.210 22 C -0.190 4.190 23 C -0.187 4.187 24 C -0.004 4.004 25 H 0.064 0.936 26 H 0.218 0.782 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.757 -19.753 -2.481 20.099 hybrid contribution 0.165 0.853 0.108 0.876 sum 2.923 -18.900 -2.372 19.271 Atomic orbital electron populations 1.69654 1.05069 1.25579 1.57833 1.24710 0.95494 0.97590 1.03058 0.86207 0.78612 0.83974 0.77507 1.21770 1.21799 1.20834 1.19196 0.90959 0.84185 1.42569 0.91351 1.42323 1.05824 0.99785 1.89359 1.20555 0.92461 0.84811 0.97621 1.22312 0.95862 0.94747 0.94656 1.22328 0.99607 0.95368 0.97116 1.22520 0.96746 0.96229 1.00840 1.22357 0.97247 0.98533 0.97087 1.22756 1.00351 0.94585 0.94039 0.89341 1.22456 0.98948 0.89802 0.90063 1.49402 1.58724 1.22020 1.05252 1.19229 0.79023 0.86745 0.80376 1.90739 1.50108 1.33394 1.67061 1.22152 1.02651 0.99089 0.97113 1.22928 0.89883 1.03744 1.02468 1.22943 1.00978 1.04253 0.90540 1.22961 0.94742 0.94136 0.88539 0.93555 0.78190 0.96093 0.96550 0.91171 0.90673 0.91909 0.91649 0.91316 0.91750 0.90681 0.91168 0.86278 0.88084 0.87960 0.88118 0.87386 0.91447 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.68 4.91 -59.91 -0.29 -18.97 16 10 C 0.17 3.56 5.16 -4.04 -0.02 3.54 16 11 C -0.07 -1.19 0.63 -152.01 -0.10 -1.29 16 12 C -0.11 -1.59 5.13 -25.15 -0.13 -1.71 16 13 C -0.13 -1.40 6.84 -24.79 -0.17 -1.57 16 14 C -0.11 -1.14 6.09 -25.15 -0.15 -1.30 16 15 C -0.10 -1.19 3.60 -88.12 -0.32 -1.50 16 16 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 17 C 0.11 1.24 6.23 -2.45 -0.02 1.22 16 18 N -0.62 -9.54 3.36 -167.63 -0.56 -10.10 16 19 C 0.56 9.33 7.70 -10.99 -0.08 9.24 16 20 O -0.54 -11.51 16.55 5.56 0.09 -11.42 16 21 C -0.19 -2.25 5.30 -91.77 -0.49 -2.74 16 22 C -0.15 -1.61 10.23 -26.73 -0.27 -1.89 16 23 C -0.15 -1.63 10.04 -26.74 -0.27 -1.90 16 24 C 0.12 2.04 5.90 -1.25 -0.01 2.03 16 25 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.38 10.28 6.84 -40.82 -0.28 10.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.12 7.71 -51.93 -0.40 0.72 16 30 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 35 H 0.07 0.69 7.20 -51.93 -0.37 0.32 16 36 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 37 H 0.12 1.10 7.65 -51.93 -0.40 0.71 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 1.40 7.67 -51.93 -0.40 1.00 16 42 H 0.07 1.08 7.60 -51.93 -0.39 0.68 16 43 H 0.10 2.20 6.98 -51.93 -0.36 1.83 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -33.73 341.23 -9.34 -43.07 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.15 Total: 7.61 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.27 Total: -5.30 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.13 Total: -57.14 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.73 -9.34 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112227622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.971 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds