Wall clock time and date at job start Tue Mar 31 2020 00:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48503 * 109.46884 * 270.00411 * 3 2 1 5 5 H 1.48501 * 109.47028 * 29.99717 * 3 2 1 6 6 H 1.48498 * 109.47386 * 150.00039 * 3 2 1 7 7 C 1.38813 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00161 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47265 * 180.02562 * 10 9 7 12 12 C 1.54160 * 111.82155 * 298.98843 * 11 10 9 13 13 C 1.54842 * 104.32818 * 213.80204 * 12 11 10 14 14 C 1.54846 * 102.73521 * 38.18699 * 13 12 11 15 15 C 1.54166 * 104.43723 * 321.74826 * 14 13 12 16 16 H 1.09003 * 111.81915 * 146.26653 * 15 14 13 17 17 C 1.54328 * 108.86037 * 271.30439 * 15 14 13 18 18 N 1.48124 * 104.69247 * 137.45277 * 17 15 14 19 19 C 1.34773 * 127.84142 * 140.28507 * 18 17 15 20 20 O 1.21281 * 119.99758 * 179.97438 * 19 18 17 21 21 C 1.50702 * 120.00251 * 359.97438 * 19 18 17 22 22 C 1.52999 * 117.49632 * 248.61748 * 21 19 18 23 23 C 1.52994 * 59.99933 * 252.51180 * 22 21 19 24 24 C 1.50251 * 104.83059 * 320.58388 * 18 17 15 25 25 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00327 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46812 * 59.99955 * 10 9 7 28 28 H 1.08994 * 109.47344 * 300.00051 * 10 9 7 29 29 H 1.08997 * 110.46381 * 95.09052 * 12 11 10 30 30 H 1.08998 * 110.57036 * 332.56490 * 12 11 10 31 31 H 1.09009 * 110.75812 * 279.87919 * 13 12 11 32 32 H 1.08997 * 110.92318 * 156.57041 * 13 12 11 33 33 H 1.09002 * 110.46114 * 80.52355 * 14 13 12 34 34 H 1.09006 * 110.46207 * 202.97480 * 14 13 12 35 35 H 1.08998 * 110.39244 * 256.25868 * 17 15 14 36 36 H 1.09003 * 110.39230 * 18.64931 * 17 15 14 37 37 H 1.08997 * 115.54714 * 34.32418 * 21 19 18 38 38 H 1.09001 * 117.49758 * 0.02562 * 22 21 19 39 39 H 1.08996 * 117.49707 * 145.01389 * 22 21 19 40 40 H 1.09004 * 117.49814 * 252.50827 * 23 22 21 41 41 H 1.08999 * 117.51871 * 107.48454 * 23 22 21 42 42 H 1.08997 * 110.28916 * 280.55427 * 24 18 17 43 43 H 1.09001 * 111.29261 * 157.61791 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 6 0.1647 -4.8042 1.2544 13 6 -0.0853 -6.3004 1.5652 14 6 1.2835 -6.9491 1.2439 15 6 1.7820 -6.1961 -0.0055 16 1 2.8669 -6.0912 -0.0094 17 6 1.2510 -6.9129 -1.2649 18 7 0.8130 -5.8194 -2.1630 19 6 0.9623 -5.7376 -3.4999 20 8 0.5453 -4.7687 -4.0985 21 6 1.6473 -6.8501 -4.2511 22 6 3.0145 -6.5485 -4.8680 23 6 1.7857 -6.6980 -5.7672 24 6 0.1685 -4.8107 -1.2548 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0023 27 1 2.6853 -3.7141 0.8912 28 1 2.6839 -3.7150 -0.8888 29 1 -0.7763 -4.2969 1.0417 30 1 0.6765 -4.3225 2.0875 31 1 -0.8652 -6.7041 0.9193 32 1 -0.3432 -6.4422 2.6147 33 1 1.9756 -6.8095 2.0744 34 1 1.1606 -8.0100 1.0257 35 1 2.0446 -7.4946 -1.7338 36 1 0.4082 -7.5552 -1.0094 37 1 1.4820 -7.8535 -3.8589 38 1 3.4187 -5.5457 -4.7302 39 1 3.7491 -7.3536 -4.8816 40 1 1.7119 -7.6015 -6.3725 41 1 1.3810 -5.7936 -6.2214 42 1 -0.8447 -5.1229 -1.0017 43 1 0.1594 -3.8193 -1.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112227622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:37 Heat of formation + Delta-G solvation = -22.259995 kcal Electronic energy + Delta-G solvation = -22651.782770 eV Core-core repulsion = 19503.606346 eV Total energy + Delta-G solvation = -3148.176424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67229 -40.12902 -37.01680 -36.49512 -35.50791 -33.52203 -31.15980 -30.44351 -27.83242 -26.58401 -25.72816 -24.34784 -23.40128 -23.26357 -21.12378 -20.11436 -19.82270 -19.08402 -18.22112 -17.20339 -16.78419 -16.63660 -16.12241 -15.74085 -15.50356 -15.09505 -14.99346 -14.87147 -14.57750 -13.84290 -13.77006 -13.63834 -13.16873 -13.09661 -12.98399 -12.77400 -12.45708 -12.19738 -12.14434 -11.79826 -11.74904 -11.72325 -11.55821 -11.53294 -11.47744 -11.41017 -11.33769 -10.98421 -10.83558 -9.74736 -9.03523 -7.99098 -5.27660 1.41236 1.44571 1.46597 1.52507 1.88126 2.51704 2.91493 3.31512 3.33959 3.45840 3.68443 3.71551 3.84255 3.97346 4.14530 4.18103 4.19546 4.23092 4.28043 4.44534 4.46925 4.52140 4.71338 4.72217 4.74951 4.77968 4.83978 4.92961 4.96420 5.00310 5.05975 5.12685 5.21481 5.22080 5.29436 5.31238 5.37013 5.41869 5.51038 5.54451 6.23011 6.60163 7.13626 7.29180 8.05166 8.28935 9.24648 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.005796 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.874495 B = 4829.605083 C = 6187.265551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.071 4.071 12 C -0.107 4.107 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.091 4.091 16 H 0.091 0.909 17 C 0.110 3.890 18 N -0.620 5.620 19 C 0.542 3.458 20 O -0.604 6.604 21 C -0.189 4.189 22 C -0.142 4.142 23 C -0.151 4.151 24 C 0.119 3.881 25 H 0.251 0.749 26 H 0.374 0.626 27 H 0.027 0.973 28 H -0.003 1.003 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -24.294 -1.366 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.048 3.952 11 C -0.072 4.072 12 C -0.145 4.145 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.111 4.111 16 H 0.110 0.890 17 C -0.011 4.011 18 N -0.352 5.352 19 C 0.333 3.667 20 O -0.486 6.486 21 C -0.209 4.209 22 C -0.180 4.180 23 C -0.188 4.188 24 C -0.004 4.004 25 H 0.060 0.940 26 H 0.206 0.794 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.179 0.821 38 H 0.090 0.910 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.334 -23.701 -1.768 24.159 hybrid contribution -0.301 2.095 -0.116 2.120 sum 4.033 -21.606 -1.884 22.060 Atomic orbital electron populations 1.69823 1.06644 1.26088 1.59393 1.25576 0.96421 1.01134 1.03552 0.85136 0.77902 0.79446 0.77266 1.21912 1.21670 1.19087 1.19615 0.91361 0.85586 1.41440 0.91051 1.42509 1.05559 1.00977 1.89134 1.20668 0.93279 0.84783 0.96510 1.22214 0.95218 0.95368 0.94414 1.22282 0.97956 0.98540 0.95760 1.22493 0.98119 0.92617 1.02100 1.22350 0.95997 0.99991 0.95744 1.22786 1.00197 0.91943 0.96189 0.89029 1.22821 1.01046 0.88679 0.88584 1.49568 1.57860 1.22516 1.05298 1.20290 0.78432 0.87244 0.80771 1.90703 1.52988 1.36351 1.68523 1.22225 1.02969 0.98676 0.97079 1.23025 0.90039 1.03625 1.01268 1.23027 1.00927 1.04482 0.90385 1.22727 0.96192 0.92159 0.89316 0.93976 0.79361 0.95550 0.98500 0.93464 0.92509 0.90783 0.90127 0.90753 0.88032 0.87323 0.88319 0.82146 0.90991 0.83880 0.84383 0.90719 0.90295 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 2 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 48.66 29.55 68.60 2.03 50.69 16 4 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -40.13 4.91 -343.45 -1.69 -41.81 16 10 C 0.17 7.47 5.16 86.38 0.45 7.92 16 11 C -0.07 -2.29 0.63 -50.56 -0.03 -2.32 16 12 C -0.11 -3.22 5.13 31.62 0.16 -3.05 16 13 C -0.12 -2.22 6.84 31.85 0.22 -2.01 16 14 C -0.10 -1.58 6.09 31.62 0.19 -1.39 16 15 C -0.09 -1.95 3.60 -9.17 -0.03 -1.99 16 16 H 0.09 1.95 7.89 -2.39 -0.02 1.93 16 17 C 0.11 2.02 6.23 86.52 0.54 2.56 16 18 N -0.62 -18.75 3.36 -802.64 -2.70 -21.45 16 19 C 0.54 18.36 7.70 87.66 0.67 19.03 16 20 O -0.60 -27.87 16.55 -3.03 -0.05 -27.92 16 21 C -0.19 -4.04 5.30 -11.54 -0.06 -4.10 16 22 C -0.14 -2.68 10.23 30.59 0.31 -2.37 16 23 C -0.15 -3.04 10.04 30.59 0.31 -2.73 16 24 C 0.12 4.32 5.90 86.10 0.51 4.82 16 25 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.37 21.54 6.84 -92.71 -0.63 20.91 16 27 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.05 1.60 7.71 -2.39 -0.02 1.58 16 30 H 0.06 1.89 7.96 -2.39 -0.02 1.87 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 0.93 7.75 -2.38 -0.02 0.91 16 35 H 0.11 1.36 7.20 -2.39 -0.02 1.34 16 36 H 0.10 1.35 7.62 -2.39 -0.02 1.33 16 37 H 0.16 2.10 7.65 -2.39 -0.02 2.08 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.02 7.67 -2.39 -0.02 2.00 16 42 H 0.08 2.63 7.60 -2.39 -0.02 2.61 16 43 H 0.04 1.90 6.98 -2.39 -0.02 1.88 16 Total: -1.00 -81.25 341.23 2.78 -78.48 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.36 Total: 27.81 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.54 Total: -3.64 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -4.10 Total: -125.42 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.69 kcal Total: -81.25 2.78 -78.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112227622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.217 kcal (2) G-P(sol) polarization free energy of solvation -81.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds