Wall clock time and date at job start Mon Mar 30 2020 23:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00499 * 2 1 4 4 H 1.48496 * 109.47194 * 270.00574 * 3 2 1 5 5 H 1.48500 * 109.46781 * 30.00823 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00394 * 3 2 1 7 7 C 1.38821 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99450 * 159.63469 * 7 2 1 9 9 N 1.36930 * 120.00431 * 339.63434 * 7 2 1 10 10 C 1.46500 * 119.99856 * 321.43332 * 9 7 2 11 11 N 1.46495 * 109.47337 * 270.00102 * 10 9 7 12 12 C 1.47054 * 124.32218 * 270.00002 * 11 10 9 13 13 C 1.53386 * 105.15399 * 195.87117 * 12 11 10 14 14 C 1.51808 * 122.49477 * 119.10422 * 13 12 11 15 15 C 1.51791 * 122.52399 * 192.64279 * 13 12 11 16 16 C 1.53535 * 103.11701 * 335.91756 * 13 12 11 17 17 C 1.34543 * 124.32773 * 89.97306 * 11 10 9 18 18 O 1.21287 * 124.91610 * 359.67634 * 17 11 10 19 19 C 1.46494 * 120.00273 * 141.43040 * 9 7 2 20 20 C 1.54269 * 110.03368 * 62.53503 * 19 9 7 21 21 C 1.54961 * 104.16250 * 217.13643 * 20 19 9 22 22 C 1.54898 * 102.77680 * 37.88604 * 21 20 19 23 23 C 1.53880 * 110.03298 * 305.31568 * 19 9 7 24 24 H 0.97002 * 119.99331 * 355.03988 * 1 2 3 25 25 H 1.09004 * 109.47400 * 149.99610 * 10 9 7 26 26 H 1.09007 * 109.46893 * 30.00000 * 10 9 7 27 27 H 1.08997 * 110.30543 * 76.94914 * 12 11 10 28 28 H 1.09000 * 110.30776 * 314.79329 * 12 11 10 29 29 H 1.09001 * 117.52787 * 219.30098 * 14 13 12 30 30 H 1.08997 * 117.53496 * 4.50792 * 14 13 12 31 31 H 1.08993 * 117.53442 * 355.53570 * 15 13 12 32 32 H 1.09006 * 117.52627 * 140.74285 * 15 13 12 33 33 H 1.08998 * 110.54445 * 142.11491 * 16 13 12 34 34 H 1.08995 * 110.54853 * 264.78611 * 16 13 12 35 35 H 1.09002 * 110.01963 * 183.92331 * 19 9 7 36 36 H 1.09001 * 110.48132 * 335.78549 * 20 19 9 37 37 H 1.08993 * 110.48697 * 98.42535 * 20 19 9 38 38 H 1.08994 * 110.72089 * 279.57465 * 21 20 19 39 39 H 1.08995 * 110.92530 * 156.29263 * 21 20 19 40 40 H 1.08996 * 110.48272 * 203.40518 * 22 21 20 41 41 H 1.09002 * 110.59476 * 80.81892 * 22 21 20 42 42 H 1.08994 * 110.03081 * 238.56611 * 23 19 9 43 43 H 1.08993 * 110.03174 * 359.95585 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0396 -1.2314 -0.3261 9 7 1.3897 -2.3513 0.4116 10 6 0.4639 -2.3171 1.5465 11 7 1.2032 -2.5622 2.7873 12 6 1.4292 -3.8940 3.3685 13 6 1.8679 -3.6312 4.8146 14 6 1.0840 -4.1416 6.0103 15 6 2.4709 -4.7118 5.6937 16 6 2.4384 -2.2071 4.7523 17 6 1.7625 -1.5978 3.5404 18 8 1.7305 -0.4123 3.2862 19 6 1.6515 -3.6146 -0.2823 20 6 3.1403 -3.9944 -0.1448 21 6 3.4994 -4.6229 -1.5150 22 6 2.7046 -3.7449 -2.5134 23 6 1.3742 -3.4564 -1.7876 24 1 -0.4849 0.8370 0.0726 25 1 -0.2966 -3.0875 1.4184 26 1 -0.0145 -1.3389 1.5958 27 1 2.2157 -4.4160 2.8236 28 1 0.5072 -4.4752 3.3526 29 1 0.9954 -3.4820 6.8735 30 1 0.2209 -4.7773 5.8128 31 1 2.5195 -5.7223 5.2882 32 1 3.2942 -4.4270 6.3489 33 1 2.1802 -1.6518 5.6540 34 1 3.5196 -2.2338 4.6170 35 1 1.0249 -4.4046 0.1318 36 1 3.7453 -3.1061 0.0375 37 1 3.2763 -4.7207 0.6563 38 1 3.1667 -5.6597 -1.5627 39 1 4.5701 -4.5531 -1.7067 40 1 2.5234 -4.2897 -3.4399 41 1 3.2379 -2.8161 -2.7161 42 1 0.6138 -4.1702 -2.1042 43 1 1.0441 -2.4400 -2.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117999975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:53 Heat of formation + Delta-G solvation = 11.085924 kcal Electronic energy + Delta-G solvation = -23252.716863 eV Core-core repulsion = 20105.986427 eV Total energy + Delta-G solvation = -3146.730436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86773 -37.71066 -36.90184 -34.75522 -33.38441 -30.92647 -29.19266 -27.85542 -26.96849 -26.09869 -24.86626 -22.51434 -22.11565 -20.00309 -19.51687 -19.03274 -18.74001 -16.59346 -15.62075 -15.53071 -15.05143 -14.90266 -14.72608 -14.52560 -14.14708 -13.49062 -13.22902 -12.84537 -12.80325 -12.60868 -12.47592 -11.98168 -11.51445 -11.26602 -11.11384 -11.05854 -10.88874 -10.62399 -10.52689 -10.43368 -10.35387 -10.25705 -10.10873 -9.97902 -9.84680 -9.68197 -9.53929 -8.83760 -8.32681 -7.81712 -6.65211 -5.75746 -3.35013 3.44375 3.56241 3.59053 3.64860 3.75400 4.04423 4.47705 4.63629 4.69285 4.88092 5.10066 5.32144 5.38536 5.41058 5.57227 5.58271 5.60207 5.72939 5.74193 5.85664 5.90834 5.95700 6.07495 6.09772 6.11482 6.13264 6.22643 6.26711 6.31783 6.41843 6.50624 6.58479 6.62582 6.82898 7.02267 7.13081 7.35327 7.42490 7.63749 7.92238 8.20173 8.58535 9.21450 9.21885 9.85296 10.38502 11.26924 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.008136 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.443028 B = 3440.491165 C = 4822.649541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.901 3.099 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.056 0.944 9 N -0.565 5.565 10 C 0.356 3.644 11 N -0.615 5.615 12 C 0.140 3.860 13 C -0.144 4.144 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.122 4.122 17 C 0.517 3.483 18 O -0.521 6.521 19 C 0.167 3.833 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.129 4.129 24 H 0.255 0.745 25 H 0.044 0.956 26 H 0.123 0.877 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -11.873 6.778 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.164 4.164 3 Si 0.731 3.269 4 H -0.220 1.220 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.074 0.926 9 N -0.284 5.284 10 C 0.150 3.850 11 N -0.355 5.355 12 C 0.015 3.985 13 C -0.144 4.144 14 C -0.198 4.198 15 C -0.197 4.197 16 C -0.163 4.163 17 C 0.302 3.698 18 O -0.396 6.396 19 C 0.060 3.940 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.168 4.168 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.140 0.860 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.581 -11.054 6.425 13.044 hybrid contribution 0.587 0.651 0.150 0.890 sum 3.169 -10.403 6.575 12.708 Atomic orbital electron populations 1.69931 1.05679 1.26411 1.50907 1.24996 0.94813 0.98602 0.97973 0.86360 0.80015 0.83979 0.76568 1.21977 1.21532 1.20420 1.18701 0.93416 0.85261 1.41189 0.92591 1.44496 1.51323 1.03875 1.28755 1.21316 0.86896 1.02618 0.74210 1.50321 1.54883 1.05013 1.25272 1.21241 0.99950 0.87467 0.89806 1.21380 1.04516 0.95461 0.93084 1.22880 0.95089 1.03355 0.98507 1.22765 0.96731 0.97800 1.02454 1.21843 1.01366 0.93682 0.99369 1.20551 0.78715 0.86351 0.84152 1.90718 1.59427 1.15326 1.74110 1.21114 0.92903 0.88403 0.91560 1.22827 0.99751 0.99677 0.94974 1.22436 0.98739 0.98277 0.96585 1.22251 0.97367 0.98990 0.96887 1.22495 0.95380 1.02732 0.96218 0.93536 0.93799 0.86029 0.91761 0.91702 0.88684 0.88534 0.88516 0.88599 0.89367 0.88550 0.93693 0.90931 0.93755 0.92743 0.92975 0.93417 0.91965 0.94081 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 11.47 55.49 0.64 -25.00 16 2 C 0.04 1.05 4.97 -17.43 -0.09 0.96 16 3 Si 0.90 23.63 29.60 -169.99 -5.03 18.60 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 7 C -0.26 -6.91 7.76 -15.06 -0.12 -7.03 16 8 H 0.06 1.56 6.93 -52.48 -0.36 1.19 16 9 N -0.56 -13.38 2.62 -168.06 -0.44 -13.82 16 10 C 0.36 8.20 6.07 -63.76 -0.39 7.82 16 11 N -0.62 -12.39 3.18 -176.41 -0.56 -12.95 16 12 C 0.14 2.13 7.20 -3.54 -0.03 2.11 16 13 C -0.14 -1.88 2.43 -155.25 -0.38 -2.26 16 14 C -0.16 -1.70 10.33 -27.20 -0.28 -1.98 16 15 C -0.16 -1.60 10.35 -27.21 -0.28 -1.88 16 16 C -0.12 -1.92 6.70 -27.18 -0.18 -2.10 16 17 C 0.52 11.14 8.04 -10.67 -0.09 11.05 16 18 O -0.52 -13.82 17.59 5.55 0.10 -13.72 16 19 C 0.17 3.35 3.42 -66.81 -0.23 3.13 16 20 C -0.13 -2.42 6.43 -25.03 -0.16 -2.58 16 21 C -0.12 -1.92 6.91 -24.69 -0.17 -2.10 16 22 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 23 C -0.13 -2.53 6.25 -25.61 -0.16 -2.69 16 24 H 0.25 7.27 8.32 -40.82 -0.34 6.93 16 25 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 26 H 0.12 3.33 5.34 -51.93 -0.28 3.05 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.04 0.85 7.81 -51.93 -0.41 0.44 16 36 H 0.07 1.53 6.64 -51.93 -0.34 1.18 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.70 343.55 -10.06 -40.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.23 Total: 0.67 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.72 Total: 0.28 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.36 Total: -51.77 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.10 Total: -13.72 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.03 Total: 18.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.70 -10.06 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117999975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.853 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds