Wall clock time and date at job start Mon Mar 30 2020 23:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00499 * 2 1 4 4 H 1.48496 * 109.47194 * 270.00574 * 3 2 1 5 5 H 1.48500 * 109.46781 * 30.00823 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00394 * 3 2 1 7 7 C 1.38821 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99450 * 159.63469 * 7 2 1 9 9 N 1.36930 * 120.00431 * 339.63434 * 7 2 1 10 10 C 1.46500 * 119.99856 * 321.43332 * 9 7 2 11 11 N 1.46495 * 109.47337 * 270.00102 * 10 9 7 12 12 C 1.47054 * 124.32218 * 270.00002 * 11 10 9 13 13 C 1.53386 * 105.15399 * 195.87117 * 12 11 10 14 14 C 1.51808 * 122.49477 * 119.10422 * 13 12 11 15 15 C 1.51791 * 122.52399 * 192.64279 * 13 12 11 16 16 C 1.53535 * 103.11701 * 335.91756 * 13 12 11 17 17 C 1.34543 * 124.32773 * 89.97306 * 11 10 9 18 18 O 1.21287 * 124.91610 * 359.67634 * 17 11 10 19 19 C 1.46494 * 120.00273 * 141.43040 * 9 7 2 20 20 C 1.54269 * 110.03368 * 62.53503 * 19 9 7 21 21 C 1.54961 * 104.16250 * 217.13643 * 20 19 9 22 22 C 1.54898 * 102.77680 * 37.88604 * 21 20 19 23 23 C 1.53880 * 110.03298 * 305.31568 * 19 9 7 24 24 H 0.97002 * 119.99331 * 355.03988 * 1 2 3 25 25 H 1.09004 * 109.47400 * 149.99610 * 10 9 7 26 26 H 1.09007 * 109.46893 * 30.00000 * 10 9 7 27 27 H 1.08997 * 110.30543 * 76.94914 * 12 11 10 28 28 H 1.09000 * 110.30776 * 314.79329 * 12 11 10 29 29 H 1.09001 * 117.52787 * 219.30098 * 14 13 12 30 30 H 1.08997 * 117.53496 * 4.50792 * 14 13 12 31 31 H 1.08993 * 117.53442 * 355.53570 * 15 13 12 32 32 H 1.09006 * 117.52627 * 140.74285 * 15 13 12 33 33 H 1.08998 * 110.54445 * 142.11491 * 16 13 12 34 34 H 1.08995 * 110.54853 * 264.78611 * 16 13 12 35 35 H 1.09002 * 110.01963 * 183.92331 * 19 9 7 36 36 H 1.09001 * 110.48132 * 335.78549 * 20 19 9 37 37 H 1.08993 * 110.48697 * 98.42535 * 20 19 9 38 38 H 1.08994 * 110.72089 * 279.57465 * 21 20 19 39 39 H 1.08995 * 110.92530 * 156.29263 * 21 20 19 40 40 H 1.08996 * 110.48272 * 203.40518 * 22 21 20 41 41 H 1.09002 * 110.59476 * 80.81892 * 22 21 20 42 42 H 1.08994 * 110.03081 * 238.56611 * 23 19 9 43 43 H 1.08993 * 110.03174 * 359.95585 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0396 -1.2314 -0.3261 9 7 1.3897 -2.3513 0.4116 10 6 0.4639 -2.3171 1.5465 11 7 1.2032 -2.5622 2.7873 12 6 1.4292 -3.8940 3.3685 13 6 1.8679 -3.6312 4.8146 14 6 1.0840 -4.1416 6.0103 15 6 2.4709 -4.7118 5.6937 16 6 2.4384 -2.2071 4.7523 17 6 1.7625 -1.5978 3.5404 18 8 1.7305 -0.4123 3.2862 19 6 1.6515 -3.6146 -0.2823 20 6 3.1403 -3.9944 -0.1448 21 6 3.4994 -4.6229 -1.5150 22 6 2.7046 -3.7449 -2.5134 23 6 1.3742 -3.4564 -1.7876 24 1 -0.4849 0.8370 0.0726 25 1 -0.2966 -3.0875 1.4184 26 1 -0.0145 -1.3389 1.5958 27 1 2.2157 -4.4160 2.8236 28 1 0.5072 -4.4752 3.3526 29 1 0.9954 -3.4820 6.8735 30 1 0.2209 -4.7773 5.8128 31 1 2.5195 -5.7223 5.2882 32 1 3.2942 -4.4270 6.3489 33 1 2.1802 -1.6518 5.6540 34 1 3.5196 -2.2338 4.6170 35 1 1.0249 -4.4046 0.1318 36 1 3.7453 -3.1061 0.0375 37 1 3.2763 -4.7207 0.6563 38 1 3.1667 -5.6597 -1.5627 39 1 4.5701 -4.5531 -1.7067 40 1 2.5234 -4.2897 -3.4399 41 1 3.2379 -2.8161 -2.7161 42 1 0.6138 -4.1702 -2.1042 43 1 1.0441 -2.4400 -2.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117999975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:53 Heat of formation + Delta-G solvation = -6.033426 kcal Electronic energy + Delta-G solvation = -23253.459214 eV Core-core repulsion = 20105.986427 eV Total energy + Delta-G solvation = -3147.472787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27077 -39.26467 -38.30089 -36.42318 -35.05484 -32.85367 -30.59520 -29.33019 -28.45027 -27.74654 -26.56416 -23.94566 -23.26775 -21.40112 -20.89400 -20.46725 -20.35734 -18.44540 -17.24149 -17.11428 -16.62109 -16.44784 -16.07401 -15.99679 -15.81421 -14.93113 -14.76681 -14.49430 -14.25671 -14.07526 -13.92532 -13.41958 -13.20262 -12.93652 -12.86486 -12.61610 -12.29523 -12.24988 -12.11720 -11.94285 -11.78753 -11.75073 -11.73060 -11.45712 -11.26229 -11.20140 -10.84970 -10.54151 -10.33394 -9.44626 -8.64428 -7.87409 -5.47497 1.31537 1.41009 1.47011 1.88916 2.41322 2.58196 2.88504 3.34662 3.44228 3.54240 3.64587 3.88983 3.98741 4.05177 4.07044 4.29372 4.47494 4.59359 4.64018 4.67803 4.71431 4.75123 4.77006 4.88058 4.90860 4.93759 4.97534 4.98228 5.05687 5.12682 5.22855 5.22939 5.33725 5.35760 5.44781 5.57396 5.61136 5.66291 5.79549 6.01201 6.46265 6.62637 7.17689 7.55529 7.86206 8.33733 9.09610 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.008136 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.443028 B = 3440.491165 C = 4822.649541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.005 4.005 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.042 0.958 9 N -0.577 5.577 10 C 0.361 3.639 11 N -0.618 5.618 12 C 0.140 3.860 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.133 4.133 16 C -0.108 4.108 17 C 0.496 3.504 18 O -0.587 6.587 19 C 0.161 3.839 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.127 4.127 24 H 0.246 0.754 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -15.808 7.894 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.203 4.203 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.059 0.941 9 N -0.298 5.298 10 C 0.153 3.847 11 N -0.355 5.355 12 C 0.017 3.983 13 C -0.164 4.164 14 C -0.190 4.190 15 C -0.170 4.170 16 C -0.148 4.148 17 C 0.283 3.717 18 O -0.467 6.467 19 C 0.055 3.945 20 C -0.165 4.165 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.167 4.167 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.583 -15.058 7.551 17.222 hybrid contribution 0.275 1.779 -0.148 1.806 sum 3.858 -13.279 7.403 15.685 Atomic orbital electron populations 1.70024 1.06203 1.25873 1.53122 1.25377 0.95255 1.00212 0.99490 0.85836 0.78560 0.82459 0.76754 1.20612 1.22795 1.21552 1.18639 0.92635 0.86561 1.38983 0.94084 1.44557 1.51211 1.04281 1.29723 1.20853 0.87422 1.00955 0.75427 1.50105 1.53785 1.07350 1.24244 1.21445 1.01171 0.84591 0.91056 1.21272 1.07606 0.94760 0.92736 1.23035 0.96081 1.03013 0.96868 1.22917 0.96690 0.97217 1.00147 1.21703 1.01163 0.95325 0.96582 1.21628 0.78421 0.85753 0.85858 1.90670 1.61844 1.18141 1.76034 1.21355 0.94627 0.87005 0.91494 1.22698 0.97406 0.98889 0.97530 1.22397 0.99429 0.99101 0.93814 1.22223 0.95819 0.98832 0.98361 1.22423 0.97364 1.00365 0.96505 0.94443 0.91920 0.90675 0.91280 0.89722 0.88006 0.87333 0.86679 0.87233 0.88174 0.87781 0.91725 0.94555 0.91605 0.89786 0.91591 0.90686 0.94203 0.92070 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.29 11.47 21.65 0.25 -55.04 16 2 C -0.01 -0.31 4.97 84.86 0.42 0.11 16 3 Si 0.93 50.71 29.60 68.60 2.03 52.74 16 4 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.30 -16.79 7.11 99.48 0.71 -16.08 16 6 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16 7 C -0.24 -13.33 7.76 84.04 0.65 -12.68 16 8 H 0.04 2.40 6.93 -2.91 -0.02 2.38 16 9 N -0.58 -27.83 2.62 -685.63 -1.79 -29.62 16 10 C 0.36 16.98 6.07 170.96 1.04 18.02 16 11 N -0.62 -24.80 3.18 -830.57 -2.64 -27.45 16 12 C 0.14 3.89 7.20 86.40 0.62 4.51 16 13 C -0.16 -3.73 2.43 -52.66 -0.13 -3.86 16 14 C -0.15 -2.57 10.33 30.29 0.31 -2.26 16 15 C -0.13 -1.97 10.35 30.28 0.31 -1.66 16 16 C -0.11 -3.23 6.70 30.30 0.20 -3.03 16 17 C 0.50 21.78 8.04 87.97 0.71 22.49 16 18 O -0.59 -32.81 17.59 -3.05 -0.05 -32.86 16 19 C 0.16 6.26 3.42 45.72 0.16 6.42 16 20 C -0.13 -4.32 6.43 31.69 0.20 -4.12 16 21 C -0.11 -3.06 6.91 31.91 0.22 -2.84 16 22 C -0.11 -3.70 6.83 31.67 0.22 -3.49 16 23 C -0.13 -4.90 6.25 31.32 0.20 -4.70 16 24 H 0.25 14.90 8.32 -92.71 -0.77 14.13 16 25 H 0.06 2.65 7.90 -2.38 -0.02 2.63 16 26 H 0.08 4.33 5.34 -2.38 -0.01 4.32 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.10 2.74 8.13 -2.39 -0.02 2.72 16 34 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.06 2.25 7.81 -2.39 -0.02 2.24 16 36 H 0.04 1.51 6.64 -2.39 -0.02 1.49 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.04 1.91 7.17 -2.39 -0.02 1.89 16 Total: -1.00 -72.82 343.55 3.90 -68.92 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.97 Total: 10.39 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.13 Total: 12.92 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.19 Total: -112.11 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.86 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.03 Total: 52.74 kcal Total: -72.82 3.90 -68.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117999975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.891 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds