Wall clock time and date at job start Tue Mar 31 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00375 * 2 1 4 4 H 1.48501 * 109.46675 * 270.00062 * 3 2 1 5 5 H 1.48502 * 109.46815 * 29.99565 * 3 2 1 6 6 H 1.48498 * 109.47190 * 149.99851 * 3 2 1 7 7 C 1.38818 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99423 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00024 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99889 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47152 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47253 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00141 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00199 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.45933 * 59.99912 * 16 14 13 18 18 C 1.53033 * 109.45688 * 300.03079 * 16 14 13 19 19 C 1.53404 * 109.55060 * 239.98961 * 18 16 14 20 20 H 1.08996 * 110.76228 * 177.76872 * 19 18 16 21 21 C 1.52150 * 107.84372 * 55.70618 * 19 18 16 22 22 C 1.33096 * 113.76385 * 301.72273 * 21 19 18 23 23 C 1.52160 * 113.75099 * 359.97438 * 22 21 19 24 24 H 1.09000 * 111.33407 * 179.97438 * 23 22 21 25 25 C 1.53487 * 107.68389 * 301.59162 * 23 22 21 26 26 C 1.53024 * 109.53703 * 55.81749 * 25 23 22 27 27 H 0.97000 * 119.99626 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00323 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46942 * 60.00545 * 10 9 7 30 30 H 1.08996 * 109.46951 * 300.00655 * 10 9 7 31 31 H 1.09002 * 109.47069 * 60.00224 * 11 10 9 32 32 H 1.08996 * 109.46935 * 300.00260 * 11 10 9 33 33 H 1.09002 * 109.47250 * 59.99968 * 12 11 10 34 34 H 1.09005 * 109.47209 * 299.99948 * 12 11 10 35 35 H 0.96996 * 119.99933 * 0.02562 * 13 12 11 36 36 H 1.09008 * 109.45669 * 0.02562 * 18 16 14 37 37 H 1.09000 * 109.45502 * 119.96483 * 18 16 14 38 38 H 1.07999 * 123.12285 * 121.67945 * 21 19 18 39 39 H 1.07991 * 123.12344 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.45952 * 295.80109 * 25 23 22 41 41 H 1.08993 * 109.46429 * 175.84145 * 25 23 22 42 42 H 1.09004 * 109.46598 * 239.97729 * 26 25 23 43 43 H 1.09006 * 109.45594 * 120.02183 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5164 -0.0006 13 7 7.8216 -3.2488 -0.0013 14 6 8.6974 -4.2732 -0.0014 15 8 8.2931 -5.4166 -0.0014 16 6 10.1790 -3.9979 -0.0014 17 1 10.4422 -3.4264 0.8887 18 6 10.5482 -3.1947 -1.2506 19 6 11.5623 -3.9847 -2.0877 20 1 11.8096 -3.4474 -3.0033 21 6 10.9557 -5.3466 -2.3917 22 6 10.6345 -6.0452 -1.3053 23 6 10.9460 -5.3270 -0.0006 24 1 10.6676 -5.9328 0.8618 25 6 12.4492 -5.0174 0.0140 26 6 12.8184 -4.2143 -1.2352 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0004 29 1 3.8484 -3.0427 -0.8898 30 1 3.8490 -3.0423 0.8901 31 1 5.8797 -1.6199 0.8900 32 1 5.8796 -1.6198 -0.8899 33 1 6.1179 -4.0876 -0.8909 34 1 6.1180 -4.0884 0.8892 35 1 8.1450 -2.3343 -0.0008 36 1 9.6516 -3.0123 -1.8431 37 1 10.9865 -2.2420 -0.9533 38 1 10.7995 -5.7122 -3.3959 39 1 10.1946 -7.0306 -1.3461 40 1 13.0121 -5.9508 0.0250 41 1 12.6919 -4.4367 0.9038 42 1 13.5565 -4.7664 -1.8170 43 1 13.2362 -3.2523 -0.9380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158397396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:38 Heat of formation + Delta-G solvation = -46.022679 kcal Electronic energy + Delta-G solvation = -21355.291691 eV Core-core repulsion = 18206.084840 eV Total energy + Delta-G solvation = -3149.206851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.01971 -39.75112 -37.60660 -35.95572 -33.96827 -32.64851 -31.91962 -31.65089 -31.16361 -27.16685 -24.74979 -23.68802 -23.07020 -22.68308 -22.29668 -21.16662 -19.67103 -18.28774 -17.78249 -17.27232 -17.02838 -16.67895 -16.55006 -15.96116 -15.66177 -15.37992 -15.10730 -14.81667 -14.08453 -13.94456 -13.78356 -13.72694 -13.18301 -13.11005 -13.06714 -12.95795 -12.84717 -12.55759 -12.55139 -12.28551 -12.09151 -12.01657 -11.81425 -11.54733 -11.06267 -10.99215 -10.76632 -10.59235 -10.08539 -9.84327 -9.33595 -8.04322 -5.39698 1.35007 1.37908 1.43575 1.50969 1.69012 2.19164 2.48551 3.26724 3.53273 3.54991 3.63100 3.72441 4.05442 4.05931 4.14493 4.22092 4.23364 4.32869 4.37863 4.43146 4.53510 4.57605 4.62686 4.69394 4.69596 4.79209 4.87344 5.09654 5.12122 5.15545 5.19713 5.22591 5.23972 5.26814 5.35444 5.40192 5.45306 5.73116 5.77187 6.03652 6.19180 6.59566 7.05914 7.29960 7.80055 8.01584 9.17248 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037446 B = 0.002808 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.564734 B = 9970.598472 C =10314.385377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.244 4.244 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.511 3.489 15 O -0.580 6.580 16 C -0.096 4.096 17 H 0.125 0.875 18 C -0.105 4.105 19 C -0.059 4.059 20 H 0.095 0.905 21 C -0.183 4.183 22 C -0.152 4.152 23 C -0.044 4.044 24 H 0.070 0.930 25 C -0.109 4.109 26 C -0.110 4.110 27 H 0.259 0.741 28 H 0.369 0.631 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.167 -5.132 -1.609 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.169 1.169 7 C -0.375 4.375 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.027 3.973 11 C -0.159 4.159 12 C 0.007 3.993 13 N -0.371 5.371 14 C 0.298 3.702 15 O -0.459 6.459 16 C -0.117 4.117 17 H 0.143 0.857 18 C -0.143 4.143 19 C -0.077 4.077 20 H 0.114 0.886 21 C -0.200 4.200 22 C -0.170 4.170 23 C -0.063 4.063 24 H 0.088 0.912 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.068 0.932 28 H 0.203 0.797 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 32.676 -6.043 -1.593 33.268 hybrid contribution -0.689 0.741 -0.091 1.016 sum 31.987 -5.302 -1.684 32.467 Atomic orbital electron populations 1.69907 1.07388 1.26933 1.59330 1.25652 0.96266 1.01804 1.02199 0.85280 0.78751 0.78676 0.78279 1.20142 1.22235 1.16911 1.19044 0.82852 0.93519 1.42040 0.93042 1.42642 1.02459 1.04190 1.91114 1.20652 0.90763 0.87554 0.98313 1.21750 0.93253 0.96936 1.03944 1.21033 0.79836 0.96882 1.01526 1.45921 1.05867 1.10222 1.75081 1.21269 0.89860 0.84484 0.74543 1.90681 1.81086 1.23215 1.50949 1.21574 0.88888 0.98748 1.02478 0.85672 1.21757 0.99574 0.98921 0.94039 1.20720 0.94908 0.93076 0.98988 0.88625 1.23979 1.01144 0.97154 0.97770 1.23725 0.99115 0.99054 0.95139 1.20480 0.95695 0.93927 0.96194 0.91194 1.21685 0.92867 1.00848 0.99293 1.21703 0.96249 1.01145 0.95644 0.93212 0.79703 0.95894 0.95891 0.89889 0.89907 0.92638 0.92377 0.74788 0.92132 0.87580 0.86584 0.88384 0.91716 0.89823 0.91683 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.84 13.97 21.65 0.30 -63.53 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.65 27.74 68.60 1.90 46.55 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.24 -9.92 6.52 99.48 0.65 -9.27 16 7 C -0.24 -14.18 10.47 84.04 0.88 -13.30 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.76 -35.26 5.41 -343.44 -1.86 -37.12 16 10 C 0.15 5.76 6.26 86.38 0.54 6.30 16 11 C -0.12 -3.12 5.44 30.59 0.17 -2.95 16 12 C 0.13 3.28 5.67 86.38 0.49 3.77 16 13 N -0.72 -14.11 5.29 -463.06 -2.45 -16.56 16 14 C 0.51 11.61 6.61 87.66 0.58 12.19 16 15 O -0.58 -18.58 14.97 -3.04 -0.05 -18.63 16 16 C -0.10 -1.42 2.52 -11.38 -0.03 -1.44 16 17 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 18 C -0.11 -1.19 5.18 30.74 0.16 -1.03 16 19 C -0.06 -0.70 3.59 -10.76 -0.04 -0.74 16 20 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 21 C -0.18 -3.19 9.81 25.00 0.25 -2.95 16 22 C -0.15 -3.15 8.26 25.00 0.21 -2.94 16 23 C -0.04 -0.75 2.68 -10.76 -0.03 -0.78 16 24 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 25 C -0.11 -1.22 5.67 30.77 0.17 -1.04 16 26 C -0.11 -1.02 5.68 30.78 0.17 -0.84 16 27 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.37 15.79 5.53 -92.71 -0.51 15.28 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.42 5.44 8.37 -92.71 -0.78 4.66 16 36 H 0.06 0.84 7.44 -2.38 -0.02 0.82 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.10 2.34 8.06 -2.92 -0.02 2.31 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 Total: -1.00 -75.60 339.20 1.48 -74.11 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.36 Total: 24.49 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 3.99 Total: -9.31 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -4.01 Total: -117.21 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Total: -75.60 1.48 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158397396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.091 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds