Wall clock time and date at job start Tue Mar 31 2020 00:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48504 * 109.47338 * 271.19769 * 3 2 1 5 5 H 1.48501 * 109.47099 * 31.19559 * 3 2 1 6 6 H 1.48500 * 109.47400 * 151.19314 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99858 * 3.49474 * 7 2 1 9 9 N 1.36942 * 120.00094 * 183.49240 * 7 2 1 10 10 C 1.46497 * 120.00188 * 184.90918 * 9 7 2 11 11 C 1.52997 * 109.47003 * 185.11906 * 10 9 7 12 12 C 1.53002 * 115.54911 * 65.21038 * 11 10 9 13 13 C 1.52999 * 109.47277 * 40.15913 * 12 11 10 14 14 N 1.46496 * 109.47276 * 178.79610 * 13 12 11 15 15 C 1.34776 * 120.00023 * 184.88053 * 14 13 12 16 16 O 1.21609 * 120.00050 * 354.32088 * 15 14 13 17 17 C 1.47107 * 119.99923 * 174.31505 * 15 14 13 18 18 C 1.32992 * 120.00123 * 179.97438 * 17 15 14 19 19 C 1.51406 * 136.32100 * 180.02562 * 18 17 15 20 20 C 1.53670 * 87.41166 * 153.99641 * 19 18 17 21 21 C 1.51404 * 136.31276 * 0.02562 * 18 17 15 22 22 C 1.53000 * 117.51903 * 210.90495 * 11 10 9 23 23 C 1.52995 * 117.49935 * 279.53400 * 11 10 9 24 24 H 0.97007 * 119.99541 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99294 * 4.91370 * 9 7 2 26 26 H 1.09000 * 109.46703 * 65.12354 * 10 9 7 27 27 H 1.08997 * 109.47205 * 305.12641 * 10 9 7 28 28 H 1.08998 * 109.46607 * 280.16079 * 12 11 10 29 29 H 1.08995 * 109.47297 * 160.16140 * 12 11 10 30 30 H 1.09000 * 109.46803 * 58.79282 * 13 12 11 31 31 H 1.09001 * 109.47439 * 298.79925 * 13 12 11 32 32 H 0.96999 * 120.00179 * 4.87338 * 14 13 12 33 33 H 1.07998 * 119.99877 * 0.02562 * 17 15 14 34 34 H 1.08997 * 113.56197 * 268.63803 * 19 18 17 35 35 H 1.08997 * 113.55472 * 39.36388 * 19 18 17 36 36 H 1.09002 * 113.82462 * 139.85447 * 20 19 18 37 37 H 1.09002 * 113.82723 * 271.43208 * 20 19 18 38 38 H 1.08998 * 113.56555 * 320.63209 * 21 18 17 39 39 H 1.09007 * 113.56196 * 91.37399 * 21 18 17 40 40 H 1.09002 * 117.50232 * 214.97730 * 22 11 10 41 41 H 1.08999 * 117.49723 * 359.97438 * 22 11 10 42 42 H 1.09001 * 117.50168 * 359.97438 * 23 11 10 43 43 H 1.09001 * 117.49811 * 144.99773 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4725 2.0610 -1.3998 5 1 1.4607 2.6452 0.7252 6 1 3.5602 1.4329 0.6746 7 6 2.0101 -1.2022 -0.0005 8 1 1.4716 -2.1366 -0.0580 9 7 3.3777 -1.2035 0.0717 10 6 4.1158 -2.4642 -0.0371 11 6 5.6047 -2.2056 0.2018 12 6 5.9748 -1.7319 1.6088 13 6 5.1468 -2.5011 2.6402 14 7 5.5217 -2.0679 3.9885 15 6 4.9911 -2.6810 5.0651 16 8 4.1251 -3.5225 4.9204 17 6 5.4597 -2.3324 6.4153 18 6 4.9358 -2.9370 7.4777 19 6 5.1265 -2.8739 8.9784 20 6 3.6772 -3.3667 9.1133 21 6 3.8824 -3.9957 7.7263 22 6 6.6044 -3.1069 -0.5258 23 6 6.4224 -1.6534 -0.9675 24 1 -0.4850 0.8401 0.0004 25 1 3.8575 -0.3695 0.1950 26 1 3.9751 -2.8827 -1.0336 27 1 3.7450 -3.1678 0.7082 28 1 5.7680 -0.6655 1.6991 29 1 7.0349 -1.9127 1.7860 30 1 5.3374 -3.5692 2.5355 31 1 4.0875 -2.3033 2.4764 32 1 6.1518 -1.3400 4.1065 33 1 6.2285 -1.5850 6.5438 34 1 5.8645 -3.5826 9.3540 35 1 5.2799 -1.8630 9.3558 36 1 3.5325 -4.0958 9.9105 37 1 2.9391 -2.5648 9.1282 38 1 3.0130 -3.9069 7.0748 39 1 4.2829 -5.0089 7.7624 40 1 7.5257 -3.3623 -0.0021 41 1 6.2014 -3.8845 -1.1745 42 1 5.8997 -1.4746 -1.9071 43 1 7.2239 -0.9524 -0.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164037802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:33 Heat of formation + Delta-G solvation = 36.525008 kcal Electronic energy + Delta-G solvation = -21290.276240 eV Core-core repulsion = 18144.648926 eV Total energy + Delta-G solvation = -3145.627315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.78343 -38.66600 -38.06203 -34.66437 -34.02812 -31.39274 -31.04224 -29.61785 -26.22661 -25.93576 -24.23535 -22.70328 -22.35548 -21.79226 -20.65991 -18.98446 -18.22139 -17.39145 -16.80060 -16.06193 -15.65404 -15.28232 -15.14645 -14.65990 -14.48149 -14.01904 -13.79698 -13.52566 -13.12326 -12.64504 -12.60539 -12.35928 -12.12727 -11.89956 -11.83555 -11.55769 -11.41714 -11.17465 -11.10271 -10.88648 -10.73556 -10.61860 -10.14843 -9.85927 -9.60648 -9.53534 -9.43137 -9.32644 -8.83666 -8.76143 -7.16081 -5.71825 -3.06551 1.32571 3.28967 3.38156 3.42488 3.43379 3.47219 3.96045 4.23515 4.32115 4.56710 4.62941 4.89479 4.91337 4.94996 5.05202 5.10758 5.26724 5.31093 5.40991 5.44421 5.50124 5.57444 5.62020 5.69787 5.74285 5.80520 5.85102 5.91811 6.02904 6.09915 6.12487 6.26034 6.31658 6.35615 6.45382 6.50104 6.61658 6.72638 6.78246 7.69183 8.06575 8.43189 8.47700 9.27753 9.99594 10.20788 11.46833 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004291 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.180531 B = 6524.399715 C = 7763.677043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.189 3.811 11 C -0.127 4.127 12 C -0.085 4.085 13 C 0.119 3.881 14 N -0.727 5.727 15 C 0.546 3.454 16 O -0.537 6.537 17 C -0.197 4.197 18 C -0.065 4.065 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.172 4.172 23 C -0.171 4.171 24 H 0.258 0.742 25 H 0.362 0.638 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.328 -4.968 13.737 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.062 3.938 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.004 4.004 14 N -0.378 5.378 15 C 0.334 3.666 16 O -0.416 6.416 17 C -0.218 4.218 18 C -0.067 4.067 19 C -0.145 4.145 20 C -0.180 4.180 21 C -0.144 4.144 22 C -0.209 4.209 23 C -0.208 4.208 24 H 0.069 0.931 25 H 0.195 0.805 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.148 0.852 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.460 -5.678 13.579 22.081 hybrid contribution 0.956 1.794 -0.035 2.034 sum 17.416 -3.884 13.544 22.402 Atomic orbital electron populations 1.69711 1.05110 1.25678 1.57731 1.24671 0.95185 0.97092 1.02165 0.86523 0.78989 0.85148 0.77638 1.21195 1.21902 1.20572 1.19073 0.80810 0.94708 1.42473 0.89286 1.42671 1.04042 1.03481 1.89466 1.20217 0.85588 0.89683 0.98304 1.21656 0.94725 1.04249 0.92155 1.21184 0.98585 1.00331 0.92188 1.21486 1.01265 0.98497 0.79180 1.45895 1.47608 1.37853 1.06406 1.18388 0.81763 0.81684 0.84771 1.90797 1.30395 1.33568 1.86824 1.21623 1.03812 1.05348 0.91022 1.23447 0.93755 0.94976 0.94540 1.22342 0.98040 1.02430 0.91689 1.22782 0.96325 1.01072 0.97832 1.22278 0.98503 0.97325 0.96273 1.23023 1.00173 0.93900 1.03820 1.22962 1.02391 0.96172 0.99248 0.93148 0.80481 0.95783 0.94387 0.91065 0.91940 0.91611 0.89282 0.77026 0.85219 0.88274 0.90512 0.90485 0.89629 0.89252 0.88510 0.89178 0.88757 0.88462 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.00 13.97 55.49 0.78 -29.22 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.55 27.90 -169.99 -4.74 17.80 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.60 6.30 56.52 0.36 -6.25 16 7 C -0.24 -6.96 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.75 -17.96 5.29 -59.91 -0.32 -18.28 16 10 C 0.19 3.72 5.32 -4.04 -0.02 3.70 16 11 C -0.13 -1.93 1.83 -154.51 -0.28 -2.21 16 12 C -0.09 -1.17 5.37 -26.73 -0.14 -1.31 16 13 C 0.12 1.86 4.80 -4.04 -0.02 1.84 16 14 N -0.73 -9.90 5.54 -61.49 -0.34 -10.24 16 15 C 0.55 8.38 7.76 -12.66 -0.10 8.28 16 16 O -0.54 -10.45 15.15 5.27 0.08 -10.37 16 17 C -0.20 -2.31 10.03 -37.80 -0.38 -2.69 16 18 C -0.07 -0.72 6.92 -100.48 -0.70 -1.42 16 19 C -0.11 -0.84 7.95 -27.41 -0.22 -1.06 16 20 C -0.14 -1.19 8.18 -26.04 -0.21 -1.41 16 21 C -0.11 -1.19 7.01 -27.41 -0.19 -1.39 16 22 C -0.17 -2.15 9.87 -26.73 -0.26 -2.41 16 23 C -0.17 -2.33 9.97 -26.73 -0.27 -2.60 16 24 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16 25 H 0.36 8.49 5.46 -40.82 -0.22 8.26 16 26 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.04 0.78 6.69 -51.93 -0.35 0.44 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.77 6.85 -51.93 -0.36 1.42 16 32 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.23 7.48 -51.93 -0.39 0.84 16 39 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -34.44 354.26 -9.42 -43.86 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.17 Total: 10.86 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.05 Total: -9.76 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.12 Total: -57.74 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.74 Total: 17.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.44 -9.42 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164037802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.387 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds