Wall clock time and date at job start Tue Mar 31 2020 00:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48504 * 109.47338 * 271.19769 * 3 2 1 5 5 H 1.48501 * 109.47099 * 31.19559 * 3 2 1 6 6 H 1.48500 * 109.47400 * 151.19314 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99858 * 3.49474 * 7 2 1 9 9 N 1.36942 * 120.00094 * 183.49240 * 7 2 1 10 10 C 1.46497 * 120.00188 * 184.90918 * 9 7 2 11 11 C 1.52997 * 109.47003 * 185.11906 * 10 9 7 12 12 C 1.53002 * 115.54911 * 65.21038 * 11 10 9 13 13 C 1.52999 * 109.47277 * 40.15913 * 12 11 10 14 14 N 1.46496 * 109.47276 * 178.79610 * 13 12 11 15 15 C 1.34776 * 120.00023 * 184.88053 * 14 13 12 16 16 O 1.21609 * 120.00050 * 354.32088 * 15 14 13 17 17 C 1.47107 * 119.99923 * 174.31505 * 15 14 13 18 18 C 1.32992 * 120.00123 * 179.97438 * 17 15 14 19 19 C 1.51406 * 136.32100 * 180.02562 * 18 17 15 20 20 C 1.53670 * 87.41166 * 153.99641 * 19 18 17 21 21 C 1.51404 * 136.31276 * 0.02562 * 18 17 15 22 22 C 1.53000 * 117.51903 * 210.90495 * 11 10 9 23 23 C 1.52995 * 117.49935 * 279.53400 * 11 10 9 24 24 H 0.97007 * 119.99541 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99294 * 4.91370 * 9 7 2 26 26 H 1.09000 * 109.46703 * 65.12354 * 10 9 7 27 27 H 1.08997 * 109.47205 * 305.12641 * 10 9 7 28 28 H 1.08998 * 109.46607 * 280.16079 * 12 11 10 29 29 H 1.08995 * 109.47297 * 160.16140 * 12 11 10 30 30 H 1.09000 * 109.46803 * 58.79282 * 13 12 11 31 31 H 1.09001 * 109.47439 * 298.79925 * 13 12 11 32 32 H 0.96999 * 120.00179 * 4.87338 * 14 13 12 33 33 H 1.07998 * 119.99877 * 0.02562 * 17 15 14 34 34 H 1.08997 * 113.56197 * 268.63803 * 19 18 17 35 35 H 1.08997 * 113.55472 * 39.36388 * 19 18 17 36 36 H 1.09002 * 113.82462 * 139.85447 * 20 19 18 37 37 H 1.09002 * 113.82723 * 271.43208 * 20 19 18 38 38 H 1.08998 * 113.56555 * 320.63209 * 21 18 17 39 39 H 1.09007 * 113.56196 * 91.37399 * 21 18 17 40 40 H 1.09002 * 117.50232 * 214.97730 * 22 11 10 41 41 H 1.08999 * 117.49723 * 359.97438 * 22 11 10 42 42 H 1.09001 * 117.50168 * 359.97438 * 23 11 10 43 43 H 1.09001 * 117.49811 * 144.99773 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4725 2.0610 -1.3998 5 1 1.4607 2.6452 0.7252 6 1 3.5602 1.4329 0.6746 7 6 2.0101 -1.2022 -0.0005 8 1 1.4716 -2.1366 -0.0580 9 7 3.3777 -1.2035 0.0717 10 6 4.1158 -2.4642 -0.0371 11 6 5.6047 -2.2056 0.2018 12 6 5.9748 -1.7319 1.6088 13 6 5.1468 -2.5011 2.6402 14 7 5.5217 -2.0679 3.9885 15 6 4.9911 -2.6810 5.0651 16 8 4.1251 -3.5225 4.9204 17 6 5.4597 -2.3324 6.4153 18 6 4.9358 -2.9370 7.4777 19 6 5.1265 -2.8739 8.9784 20 6 3.6772 -3.3667 9.1133 21 6 3.8824 -3.9957 7.7263 22 6 6.6044 -3.1069 -0.5258 23 6 6.4224 -1.6534 -0.9675 24 1 -0.4850 0.8401 0.0004 25 1 3.8575 -0.3695 0.1950 26 1 3.9751 -2.8827 -1.0336 27 1 3.7450 -3.1678 0.7082 28 1 5.7680 -0.6655 1.6991 29 1 7.0349 -1.9127 1.7860 30 1 5.3374 -3.5692 2.5355 31 1 4.0875 -2.3033 2.4764 32 1 6.1518 -1.3400 4.1065 33 1 6.2285 -1.5850 6.5438 34 1 5.8645 -3.5826 9.3540 35 1 5.2799 -1.8630 9.3558 36 1 3.5325 -4.0958 9.9105 37 1 2.9391 -2.5648 9.1282 38 1 3.0130 -3.9069 7.0748 39 1 4.2829 -5.0089 7.7624 40 1 7.5257 -3.3623 -0.0021 41 1 6.2014 -3.8845 -1.1745 42 1 5.8997 -1.4746 -1.9071 43 1 7.2239 -0.9524 -0.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164037802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:32 Heat of formation + Delta-G solvation = 12.957806 kcal Electronic energy + Delta-G solvation = -21291.298191 eV Core-core repulsion = 18144.648926 eV Total energy + Delta-G solvation = -3146.649265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.89920 -39.75173 -39.09690 -36.07657 -35.83833 -33.25326 -32.35797 -30.68824 -28.06249 -26.67871 -25.28250 -24.29378 -23.57579 -23.03841 -21.77910 -20.48671 -19.50189 -18.92964 -17.92463 -17.12743 -16.68426 -16.58917 -16.39825 -16.23008 -15.76123 -15.24787 -15.12889 -14.98233 -14.72452 -14.28539 -14.03559 -13.45258 -13.34066 -13.06271 -12.92582 -12.87235 -12.68710 -12.59049 -12.24069 -12.20346 -11.94172 -11.90217 -11.83449 -11.49445 -11.11666 -10.99340 -10.71406 -10.57187 -10.31781 -9.90945 -9.29415 -8.04824 -5.37892 0.38128 1.32799 1.39476 1.46163 2.21428 2.31709 2.46371 2.84005 3.25776 3.40134 3.58130 3.69451 3.76914 3.81545 3.91973 4.05258 4.08907 4.20434 4.25813 4.40534 4.47759 4.59331 4.61515 4.73390 4.83996 4.84929 4.92343 4.93552 4.99162 5.02830 5.08100 5.12878 5.22259 5.26006 5.30316 5.34939 5.35226 5.49587 5.66707 5.73161 6.19407 6.63740 7.06800 7.31172 7.82494 8.05276 9.17426 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004291 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.180531 B = 6524.399715 C = 7763.677043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.248 1.248 7 C -0.236 4.236 8 H 0.046 0.954 9 N -0.747 5.747 10 C 0.188 3.812 11 C -0.150 4.150 12 C -0.072 4.072 13 C 0.127 3.873 14 N -0.714 5.714 15 C 0.533 3.467 16 O -0.594 6.594 17 C -0.208 4.208 18 C -0.073 4.073 19 C -0.089 4.089 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.163 4.163 24 H 0.258 0.742 25 H 0.368 0.632 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.416 0.584 33 H 0.168 0.832 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.796 -3.439 15.208 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.367 4.367 8 H 0.064 0.936 9 N -0.393 5.393 10 C 0.062 3.938 11 C -0.151 4.151 12 C -0.109 4.109 13 C 0.003 3.997 14 N -0.365 5.365 15 C 0.324 3.676 16 O -0.476 6.476 17 C -0.228 4.228 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.173 4.173 21 C -0.162 4.162 22 C -0.185 4.185 23 C -0.200 4.200 24 H 0.067 0.933 25 H 0.202 0.798 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.253 0.747 33 H 0.186 0.814 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.008 -4.145 15.047 26.172 hybrid contribution -0.543 1.130 -0.508 1.353 sum 20.465 -3.015 14.540 25.285 Atomic orbital electron populations 1.69916 1.07365 1.26732 1.59680 1.25578 0.96150 1.01502 1.02429 0.85311 0.78634 0.79061 0.78157 1.20238 1.22280 1.17232 1.19021 0.83157 0.93245 1.41309 0.93553 1.42571 1.02243 1.05309 1.89170 1.20252 0.88934 0.87531 0.97055 1.21477 0.91816 1.07855 0.93958 1.21122 1.00254 0.99386 0.90182 1.21207 0.98783 0.98666 0.81072 1.45767 1.47409 1.38039 1.05308 1.19189 0.80967 0.80875 0.86560 1.90775 1.32967 1.36137 1.87727 1.21722 1.05325 1.07021 0.88762 1.23963 0.92821 0.93975 0.96741 1.22358 0.97696 1.04110 0.88360 1.22776 0.97126 1.01098 0.96281 1.22421 0.97545 0.98398 0.97790 1.23142 0.99744 0.93327 1.02303 1.23044 1.02021 0.97596 0.97364 0.93337 0.79767 0.96530 0.96385 0.91444 0.87862 0.92381 0.94570 0.74691 0.81422 0.85909 0.88602 0.88350 0.90155 0.93232 0.87875 0.86121 0.88925 0.89855 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.96 13.97 21.65 0.30 -65.66 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.96 46.79 27.90 68.60 1.91 48.71 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -10.64 6.30 99.48 0.63 -10.01 16 7 C -0.24 -14.29 10.47 84.03 0.88 -13.41 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -36.37 5.29 -343.46 -1.82 -38.18 16 10 C 0.19 7.62 5.32 86.38 0.46 8.08 16 11 C -0.15 -4.29 1.83 -52.18 -0.10 -4.38 16 12 C -0.07 -1.79 5.37 30.59 0.16 -1.63 16 13 C 0.13 3.99 4.80 86.38 0.41 4.41 16 14 N -0.71 -18.87 5.54 -466.72 -2.59 -21.45 16 15 C 0.53 16.60 7.76 86.57 0.67 17.27 16 16 O -0.59 -24.65 15.15 -4.06 -0.06 -24.71 16 17 C -0.21 -4.56 10.03 23.43 0.24 -4.32 16 18 C -0.07 -1.53 6.92 -17.17 -0.12 -1.65 16 19 C -0.09 -1.09 7.95 30.16 0.24 -0.85 16 20 C -0.14 -2.05 8.18 31.04 0.25 -1.79 16 21 C -0.12 -2.84 7.01 30.16 0.21 -2.63 16 22 C -0.15 -3.20 9.87 30.59 0.30 -2.89 16 23 C -0.16 -3.89 9.97 30.59 0.31 -3.59 16 24 H 0.26 16.32 8.31 -92.70 -0.77 15.55 16 25 H 0.37 16.86 5.46 -92.71 -0.51 16.36 16 26 H 0.02 0.70 8.09 -2.39 -0.02 0.68 16 27 H 0.02 0.80 6.69 -2.39 -0.02 0.79 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.79 7.95 -2.39 -0.02 1.77 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.52 6.85 -2.39 -0.02 1.51 16 32 H 0.42 7.49 8.47 -92.71 -0.78 6.71 16 33 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.51 7.48 -2.39 -0.02 1.49 16 39 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.12 1.95 8.09 -2.39 -0.02 1.93 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.72 354.26 1.77 -79.95 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.37 Total: 32.29 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.39 Total: -10.94 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -4.10 Total: -125.30 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.91 Total: 48.71 kcal Total: -81.72 1.77 -79.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164037802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.912 kcal (2) G-P(sol) polarization free energy of solvation -81.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds