Wall clock time and date at job start Mon Mar 30 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47553 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47106 * 299.99641 * 3 2 1 6 6 H 1.48501 * 109.47483 * 59.99002 * 3 2 1 7 7 C 1.38814 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00162 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47465 * 175.58835 * 10 9 7 12 12 C 1.53007 * 115.54959 * 303.90182 * 11 10 9 13 13 C 1.53001 * 109.46883 * 278.02892 * 12 11 10 14 14 N 1.46500 * 109.46747 * 175.02638 * 13 12 11 15 15 C 1.34780 * 119.99717 * 180.02562 * 14 13 12 16 16 O 1.21606 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.47103 * 119.99592 * 179.97438 * 15 14 13 18 18 C 1.32614 * 124.61846 * 180.02562 * 17 15 14 19 19 C 1.51108 * 110.76210 * 180.21926 * 18 17 15 20 20 C 1.54743 * 104.75736 * 343.04618 * 19 18 17 21 21 C 1.51108 * 124.62377 * 359.97438 * 17 15 14 22 22 C 1.53003 * 117.51501 * 89.59817 * 11 10 9 23 23 C 1.52994 * 117.49907 * 158.22955 * 11 10 9 24 24 H 0.96995 * 120.00047 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00404 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46799 * 55.59172 * 10 9 7 27 27 H 1.08995 * 109.46572 * 295.59357 * 10 9 7 28 28 H 1.09004 * 109.46997 * 158.02944 * 12 11 10 29 29 H 1.08992 * 109.47106 * 38.03035 * 12 11 10 30 30 H 1.09001 * 109.46970 * 55.02701 * 13 12 11 31 31 H 1.09002 * 109.47170 * 295.02422 * 13 12 11 32 32 H 0.96999 * 120.00434 * 359.97438 * 14 13 12 33 33 H 1.08003 * 124.61947 * 359.96578 * 18 17 15 34 34 H 1.09002 * 110.36444 * 101.99897 * 19 18 17 35 35 H 1.08997 * 110.36992 * 224.32137 * 19 18 17 36 36 H 1.09009 * 111.19337 * 267.19244 * 20 19 18 37 37 H 1.08997 * 110.84343 * 143.34438 * 20 19 18 38 38 H 1.09001 * 110.36402 * 315.45975 * 21 17 15 39 39 H 1.08995 * 110.36767 * 77.78046 * 21 17 15 40 40 H 1.09003 * 117.49969 * 214.96884 * 22 11 10 41 41 H 1.08994 * 117.49890 * 359.97438 * 22 11 10 42 42 H 1.08994 * 117.50344 * 359.97438 * 23 11 10 43 43 H 1.09004 * 117.49978 * 145.00424 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0676 -4.8176 0.1115 12 6 0.1322 -4.7735 1.3215 13 6 0.8593 -5.3269 2.5486 14 7 0.0070 -5.1755 3.7306 15 6 0.4436 -5.5958 4.9345 16 8 1.5447 -6.1012 5.0394 17 6 -0.4119 -5.4432 6.1214 18 6 -0.0753 -5.8230 7.3466 19 6 -1.1875 -5.5238 8.3247 20 6 -2.0938 -4.5060 7.5917 21 6 -1.7935 -4.8314 6.1109 22 6 0.5124 -5.3999 -1.1899 23 6 1.5336 -6.1925 -0.3714 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3881 0.0005 26 1 2.7427 -3.6811 0.8485 27 1 2.6242 -3.7494 -0.9263 28 1 -0.7519 -5.3783 1.1195 29 1 -0.1682 -3.7431 1.5111 30 1 1.7890 -4.7780 2.6983 31 1 1.0815 -6.3827 2.3938 32 1 -0.8711 -4.7720 3.6470 33 1 0.8641 -6.2869 7.6088 34 1 -1.7435 -6.4324 8.5564 35 1 -0.7832 -5.0828 9.2357 36 1 -1.8095 -3.4812 7.8311 37 1 -3.1437 -4.6829 7.8254 38 1 -1.8003 -3.9200 5.5132 39 1 -2.5214 -5.5448 5.7246 40 1 -0.5193 -5.7517 -1.1841 41 1 0.8524 -4.9557 -2.1254 42 1 2.5457 -6.2701 -0.7686 43 1 1.1737 -7.0657 0.1728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164058463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:25 Heat of formation + Delta-G solvation = 0.793395 kcal Electronic energy + Delta-G solvation = -21271.215107 eV Core-core repulsion = 18124.038353 eV Total energy + Delta-G solvation = -3147.176754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98250 -38.42053 -37.67853 -34.75682 -33.92589 -30.81160 -30.46902 -29.21764 -28.34092 -25.95329 -23.76721 -22.73529 -22.13637 -21.62047 -20.79397 -19.19308 -18.15016 -17.21101 -17.05244 -16.06019 -15.77311 -15.31830 -14.95998 -14.53531 -14.32938 -14.09518 -13.34289 -13.10518 -13.01848 -12.88714 -12.67783 -12.31835 -12.18842 -11.87907 -11.82440 -11.51257 -11.39434 -11.37142 -11.11101 -10.92490 -10.84326 -10.57110 -10.11934 -9.91316 -9.85128 -9.62161 -9.31418 -9.16994 -8.87511 -8.81815 -6.89020 -5.75628 -3.03113 1.30069 3.28403 3.34862 3.44123 3.50303 3.52180 4.07600 4.29553 4.36142 4.62204 4.75257 4.85984 5.04822 5.06592 5.11476 5.17811 5.35381 5.38979 5.42866 5.53475 5.57048 5.58607 5.63729 5.71335 5.72438 5.80271 5.92302 5.92869 6.13822 6.18150 6.21409 6.25124 6.37775 6.44607 6.47051 6.52998 6.64499 6.78683 6.85458 7.61518 7.72483 8.30836 8.43756 9.55472 10.13608 10.49374 11.47465 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.004149 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.880396 B = 6746.342520 C = 8162.437846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.562 3.438 16 O -0.547 6.547 17 C -0.190 4.190 18 C -0.080 4.080 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.094 4.094 22 C -0.166 4.166 23 C -0.178 4.178 24 H 0.254 0.746 25 H 0.384 0.616 26 H 0.026 0.974 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -13.740 11.443 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.002 3.998 14 N -0.370 5.370 15 C 0.350 3.650 16 O -0.426 6.426 17 C -0.193 4.193 18 C -0.099 4.099 19 C -0.143 4.143 20 C -0.161 4.161 21 C -0.131 4.131 22 C -0.203 4.203 23 C -0.215 4.215 24 H 0.063 0.937 25 H 0.218 0.782 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.910 -13.969 11.480 18.736 hybrid contribution -0.229 1.166 -0.173 1.201 sum -5.139 -12.803 11.308 17.838 Atomic orbital electron populations 1.69665 1.05061 1.25425 1.58150 1.24703 0.95510 0.97576 1.03177 0.86138 0.78859 0.84209 0.77144 1.20572 1.21908 1.21919 1.19290 0.91086 0.84178 1.42196 0.91204 1.42314 1.05884 0.99684 1.89313 1.20176 0.91888 0.84184 0.97729 1.21568 1.00891 0.94889 0.94590 1.21270 0.96712 1.02975 0.92052 1.21359 0.94296 1.00855 0.83255 1.45945 1.20853 1.62439 1.07808 1.17968 0.85978 0.78069 0.82957 1.90780 1.21160 1.44725 1.85945 1.21889 0.97404 1.05725 0.94266 1.24026 0.98320 0.93944 0.93652 1.21504 0.95041 0.99673 0.98111 1.22458 0.99818 0.99536 0.94266 1.21270 0.93206 1.00687 0.97934 1.22995 0.98225 1.03496 0.95623 1.22963 0.99658 0.94495 1.04404 0.93656 0.78151 0.95638 0.96452 0.92013 0.89197 0.90903 0.91821 0.76460 0.84535 0.89757 0.90297 0.90638 0.90551 0.90423 0.90255 0.89327 0.88697 0.88937 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.31 5.23 -59.91 -0.31 -18.62 16 10 C 0.19 3.85 6.15 -4.04 -0.02 3.82 16 11 C -0.12 -1.93 1.65 -154.51 -0.25 -2.18 16 12 C -0.09 -1.39 5.20 -26.73 -0.14 -1.53 16 13 C 0.13 1.89 5.49 -4.04 -0.02 1.87 16 14 N -0.72 -9.95 5.55 -61.49 -0.34 -10.29 16 15 C 0.56 8.52 7.79 -12.66 -0.10 8.42 16 16 O -0.55 -10.26 16.77 5.27 0.09 -10.17 16 17 C -0.19 -2.25 6.09 -102.73 -0.63 -2.88 16 18 C -0.08 -0.83 10.43 -36.01 -0.38 -1.21 16 19 C -0.11 -0.79 6.81 -26.77 -0.18 -0.97 16 20 C -0.12 -0.92 7.17 -24.99 -0.18 -1.10 16 21 C -0.09 -0.85 6.02 -26.86 -0.16 -1.01 16 22 C -0.17 -2.43 9.87 -26.73 -0.26 -2.70 16 23 C -0.18 -2.41 9.57 -26.73 -0.26 -2.66 16 24 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.38 10.06 6.80 -40.82 -0.28 9.78 16 26 H 0.03 0.54 7.96 -51.92 -0.41 0.13 16 27 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 29 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 30 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 31 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 32 H 0.40 4.64 7.48 -40.82 -0.31 4.34 16 33 H 0.14 1.45 8.03 -52.48 -0.42 1.03 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -32.69 355.06 -9.51 -42.20 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.17 Total: 10.70 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.83 Total: -9.42 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.07 Total: -56.19 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.69 -9.51 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164058463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.998 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds