Wall clock time and date at job start Mon Mar 30 2020 23:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47553 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47106 * 299.99641 * 3 2 1 6 6 H 1.48501 * 109.47483 * 59.99002 * 3 2 1 7 7 C 1.38814 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00162 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47465 * 175.58835 * 10 9 7 12 12 C 1.53007 * 115.54959 * 303.90182 * 11 10 9 13 13 C 1.53001 * 109.46883 * 278.02892 * 12 11 10 14 14 N 1.46500 * 109.46747 * 175.02638 * 13 12 11 15 15 C 1.34780 * 119.99717 * 180.02562 * 14 13 12 16 16 O 1.21606 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.47103 * 119.99592 * 179.97438 * 15 14 13 18 18 C 1.32614 * 124.61846 * 180.02562 * 17 15 14 19 19 C 1.51108 * 110.76210 * 180.21926 * 18 17 15 20 20 C 1.54743 * 104.75736 * 343.04618 * 19 18 17 21 21 C 1.51108 * 124.62377 * 359.97438 * 17 15 14 22 22 C 1.53003 * 117.51501 * 89.59817 * 11 10 9 23 23 C 1.52994 * 117.49907 * 158.22955 * 11 10 9 24 24 H 0.96995 * 120.00047 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00404 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46799 * 55.59172 * 10 9 7 27 27 H 1.08995 * 109.46572 * 295.59357 * 10 9 7 28 28 H 1.09004 * 109.46997 * 158.02944 * 12 11 10 29 29 H 1.08992 * 109.47106 * 38.03035 * 12 11 10 30 30 H 1.09001 * 109.46970 * 55.02701 * 13 12 11 31 31 H 1.09002 * 109.47170 * 295.02422 * 13 12 11 32 32 H 0.96999 * 120.00434 * 359.97438 * 14 13 12 33 33 H 1.08003 * 124.61947 * 359.96578 * 18 17 15 34 34 H 1.09002 * 110.36444 * 101.99897 * 19 18 17 35 35 H 1.08997 * 110.36992 * 224.32137 * 19 18 17 36 36 H 1.09009 * 111.19337 * 267.19244 * 20 19 18 37 37 H 1.08997 * 110.84343 * 143.34438 * 20 19 18 38 38 H 1.09001 * 110.36402 * 315.45975 * 21 17 15 39 39 H 1.08995 * 110.36767 * 77.78046 * 21 17 15 40 40 H 1.09003 * 117.49969 * 214.96884 * 22 11 10 41 41 H 1.08994 * 117.49890 * 359.97438 * 22 11 10 42 42 H 1.08994 * 117.50344 * 359.97438 * 23 11 10 43 43 H 1.09004 * 117.49978 * 145.00424 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0676 -4.8176 0.1115 12 6 0.1322 -4.7735 1.3215 13 6 0.8593 -5.3269 2.5486 14 7 0.0070 -5.1755 3.7306 15 6 0.4436 -5.5958 4.9345 16 8 1.5447 -6.1012 5.0394 17 6 -0.4119 -5.4432 6.1214 18 6 -0.0753 -5.8230 7.3466 19 6 -1.1875 -5.5238 8.3247 20 6 -2.0938 -4.5060 7.5917 21 6 -1.7935 -4.8314 6.1109 22 6 0.5124 -5.3999 -1.1899 23 6 1.5336 -6.1925 -0.3714 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3881 0.0005 26 1 2.7427 -3.6811 0.8485 27 1 2.6242 -3.7494 -0.9263 28 1 -0.7519 -5.3783 1.1195 29 1 -0.1682 -3.7431 1.5111 30 1 1.7890 -4.7780 2.6983 31 1 1.0815 -6.3827 2.3938 32 1 -0.8711 -4.7720 3.6470 33 1 0.8641 -6.2869 7.6088 34 1 -1.7435 -6.4324 8.5564 35 1 -0.7832 -5.0828 9.2357 36 1 -1.8095 -3.4812 7.8311 37 1 -3.1437 -4.6829 7.8254 38 1 -1.8003 -3.9200 5.5132 39 1 -2.5214 -5.5448 5.7246 40 1 -0.5193 -5.7517 -1.1841 41 1 0.8524 -4.9557 -2.1254 42 1 2.5457 -6.2701 -0.7686 43 1 1.1737 -7.0657 0.1728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164058463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:24 Heat of formation + Delta-G solvation = -19.707463 kcal Electronic energy + Delta-G solvation = -21272.104090 eV Core-core repulsion = 18124.038353 eV Total energy + Delta-G solvation = -3148.065738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07125 -39.64850 -38.61858 -36.13065 -35.76433 -32.80439 -31.61381 -30.05161 -29.11706 -27.80499 -24.97627 -24.62585 -23.29385 -22.67665 -21.57080 -20.39509 -19.49611 -18.97118 -18.10603 -17.18405 -16.91761 -16.62788 -16.27987 -16.05402 -15.58946 -15.45351 -15.02057 -14.75883 -14.23583 -13.94119 -13.80164 -13.59365 -13.18637 -13.06951 -12.92201 -12.82385 -12.61990 -12.56592 -12.28340 -12.10324 -12.05997 -12.00445 -11.94904 -11.84688 -11.14222 -11.05071 -10.92032 -10.55319 -10.22894 -9.83032 -8.98089 -7.95768 -5.23203 0.36167 1.45942 1.46219 1.56329 2.17590 2.25609 2.53753 2.88976 3.37602 3.51943 3.63645 3.81395 3.82652 3.96324 4.06585 4.08787 4.20999 4.24930 4.30972 4.38326 4.46243 4.60685 4.78410 4.81196 4.83125 4.90453 4.92917 4.96615 4.97511 5.06831 5.16638 5.17947 5.24809 5.32435 5.33415 5.36287 5.37589 5.44483 5.48522 5.53608 6.27078 6.51302 7.16495 7.34256 8.09690 8.36169 9.27734 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.004149 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.880396 B = 6746.342520 C = 8162.437846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.189 3.811 11 C -0.142 4.142 12 C -0.078 4.078 13 C 0.134 3.866 14 N -0.713 5.713 15 C 0.555 3.445 16 O -0.593 6.593 17 C -0.217 4.217 18 C -0.070 4.070 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.161 4.161 23 C -0.152 4.152 24 H 0.252 0.748 25 H 0.377 0.623 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -14.697 12.203 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.062 3.938 11 C -0.143 4.143 12 C -0.115 4.115 13 C 0.010 3.990 14 N -0.363 5.363 15 C 0.345 3.655 16 O -0.476 6.476 17 C -0.220 4.220 18 C -0.090 4.090 19 C -0.138 4.138 20 C -0.158 4.158 21 C -0.128 4.128 22 C -0.198 4.198 23 C -0.189 4.189 24 H 0.061 0.939 25 H 0.210 0.790 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.992 -14.937 12.230 20.214 hybrid contribution 0.174 1.405 -0.393 1.469 sum -5.818 -13.532 11.837 18.897 Atomic orbital electron populations 1.69800 1.06347 1.25952 1.59422 1.25465 0.96400 1.00696 1.03627 0.85142 0.78128 0.80107 0.76805 1.19533 1.21756 1.21932 1.19634 0.91333 0.85594 1.41338 0.91314 1.42447 1.05686 1.00587 1.89116 1.20214 0.92628 0.84191 0.96761 1.21408 1.01480 0.95089 0.96338 1.21110 0.97360 1.01601 0.91472 1.21184 0.93246 1.00728 0.83819 1.45893 1.21119 1.61997 1.07339 1.18577 0.85806 0.77110 0.84002 1.90742 1.23225 1.47007 1.86658 1.21927 0.98745 1.08028 0.93300 1.24370 0.98730 0.91818 0.94066 1.21576 0.93966 1.00640 0.97610 1.22496 1.01122 0.99337 0.92816 1.21305 0.91689 1.00502 0.99290 1.23060 0.99698 1.02970 0.94101 1.23051 0.99808 0.93294 1.02764 0.93942 0.78970 0.96864 0.96734 0.89129 0.92213 0.94220 0.90916 0.75122 0.85376 0.87701 0.88838 0.90973 0.88329 0.91056 0.88857 0.87277 0.89778 0.88473 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.66 13.06 21.65 0.28 -58.37 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.97 46.77 29.55 68.60 2.03 48.79 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.25 -14.14 9.99 84.04 0.84 -13.30 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.89 5.23 -343.45 -1.80 -39.68 16 10 C 0.19 7.89 6.15 86.38 0.53 8.42 16 11 C -0.14 -4.54 1.65 -52.18 -0.09 -4.62 16 12 C -0.08 -2.31 5.20 30.60 0.16 -2.15 16 13 C 0.13 4.07 5.49 86.38 0.47 4.55 16 14 N -0.71 -19.87 5.55 -466.71 -2.59 -22.45 16 15 C 0.55 17.13 7.79 86.57 0.67 17.81 16 16 O -0.59 -23.06 16.77 -4.05 -0.07 -23.13 16 17 C -0.22 -5.04 6.09 -18.57 -0.11 -5.16 16 18 C -0.07 -1.39 10.43 24.65 0.26 -1.14 16 19 C -0.10 -1.24 6.81 30.57 0.21 -1.03 16 20 C -0.12 -1.49 7.17 31.72 0.23 -1.26 16 21 C -0.09 -1.50 6.02 30.51 0.18 -1.31 16 22 C -0.16 -4.42 9.87 30.60 0.30 -4.12 16 23 C -0.15 -3.77 9.57 30.59 0.29 -3.48 16 24 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.38 20.28 6.80 -92.70 -0.63 19.64 16 26 H 0.01 0.59 7.96 -2.38 -0.02 0.57 16 27 H 0.01 0.62 8.10 -2.39 -0.02 0.60 16 28 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 29 H 0.06 2.16 6.94 -2.39 -0.02 2.14 16 30 H 0.04 1.46 7.96 -2.39 -0.02 1.44 16 31 H 0.07 2.08 7.72 -2.39 -0.02 2.06 16 32 H 0.41 9.46 7.48 -92.71 -0.69 8.77 16 33 H 0.13 2.71 8.03 -2.91 -0.02 2.69 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.24 7.83 -2.39 -0.02 1.23 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 2.55 8.07 -2.39 -0.02 2.53 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.11 2.34 7.90 -2.38 -0.02 2.32 16 Total: -1.00 -71.85 355.06 1.95 -69.90 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.32 Total: 35.28 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.42 Total: -10.34 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -4.10 Total: -120.51 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.13 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -71.85 1.95 -69.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164058463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.194 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds