Wall clock time and date at job start Mon Mar 30 2020 23:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46894 * 109.54144 * 159.62578 * 3 2 1 5 5 C 1.46901 * 111.00767 * 302.05871 * 4 3 2 6 6 C 1.52997 * 109.47278 * 243.13282 * 5 4 3 7 7 C 1.52999 * 109.47071 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47259 * 59.99632 * 7 6 5 9 9 C 1.50706 * 109.47125 * 59.99731 * 8 7 6 10 10 H 1.07999 * 119.99667 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00018 * 179.72597 * 9 8 7 12 12 N 1.31510 * 120.00111 * 180.27705 * 11 9 8 13 13 Si 1.86799 * 119.99875 * 0.27590 * 11 9 8 14 14 H 1.48499 * 109.46986 * 90.00196 * 13 11 9 15 15 H 1.48501 * 109.47178 * 209.99984 * 13 11 9 16 16 H 1.48493 * 109.47275 * 330.00113 * 13 11 9 17 17 C 1.53003 * 109.47126 * 300.00319 * 8 7 6 18 18 C 1.52995 * 109.47376 * 123.12332 * 5 4 3 19 19 C 1.53176 * 109.61600 * 279.85036 * 3 2 1 20 20 C 1.53091 * 109.16343 * 62.93264 * 19 3 2 21 21 O 1.42902 * 109.41654 * 57.60593 * 20 19 3 22 22 C 1.42898 * 114.09675 * 298.84206 * 21 20 19 23 23 C 1.53095 * 109.41533 * 61.16037 * 22 21 20 24 24 H 1.00902 * 111.00103 * 178.10052 * 4 3 2 25 25 H 1.09002 * 109.46571 * 3.12595 * 5 4 3 26 26 H 1.08997 * 109.47413 * 59.99207 * 6 5 4 27 27 H 1.09002 * 109.46759 * 299.99198 * 6 5 4 28 28 H 1.09002 * 109.47165 * 299.99551 * 7 6 5 29 29 H 1.09003 * 109.47014 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.47308 * 179.97438 * 8 7 6 31 31 H 0.97000 * 120.00129 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.47159 * 179.97438 * 17 8 7 33 33 H 1.09002 * 109.46772 * 299.99759 * 17 8 7 34 34 H 1.08997 * 109.47357 * 300.00007 * 18 5 4 35 35 H 1.09002 * 109.47056 * 60.00560 * 18 5 4 36 36 H 1.09000 * 109.51852 * 182.83650 * 19 3 2 37 37 H 1.08997 * 109.52190 * 303.02290 * 19 3 2 38 38 H 1.08997 * 109.47660 * 297.62222 * 20 19 3 39 39 H 1.09003 * 109.48816 * 177.59708 * 20 19 3 40 40 H 1.08995 * 109.48391 * 301.17503 * 22 21 20 41 41 H 1.09008 * 109.48791 * 181.14147 * 22 21 20 42 42 H 1.09001 * 109.51986 * 182.48209 * 23 22 21 43 43 H 1.08999 * 109.52692 * 62.29479 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0988 1.2986 -0.4820 5 6 2.5888 1.5872 -1.8290 6 6 3.7599 1.6760 -2.8096 7 6 3.2287 1.9760 -4.2127 8 6 2.4734 3.3065 -4.1984 9 6 3.4063 4.4091 -3.7680 10 1 4.4351 4.1834 -3.5291 11 6 2.9480 5.7068 -3.6854 12 7 3.7635 6.6698 -3.3151 13 14 1.1688 6.0971 -4.0994 14 1 0.3399 5.9892 -2.8720 15 1 1.0774 7.4778 -4.6386 16 1 0.6747 5.1348 -5.1166 17 6 1.3023 3.2177 -3.2178 18 6 1.8338 2.9178 -1.8143 19 6 3.1224 -0.2460 1.4216 20 6 2.6719 -1.6336 1.8853 21 8 3.1563 -2.6202 0.9721 22 6 2.6704 -2.4679 -0.3631 23 6 3.1209 -1.1137 -0.9173 24 1 4.1070 1.3342 -0.4617 25 1 1.9139 0.7900 -2.1405 26 1 4.2978 0.7280 -2.8200 27 1 4.4349 2.4733 -2.4981 28 1 2.5540 1.1785 -4.5239 29 1 4.0631 2.0397 -4.9111 30 1 2.0954 3.5204 -5.1981 31 1 3.4412 7.5829 -3.2573 32 1 0.7645 4.1657 -3.2073 33 1 0.6276 2.4202 -3.5291 34 1 0.9995 2.8545 -1.1159 35 1 2.5088 3.7151 -1.5029 36 1 4.2112 -0.1951 1.4289 37 1 2.7169 0.5117 2.0922 38 1 1.5830 -1.6706 1.9165 39 1 3.0710 -1.8319 2.8801 40 1 1.5815 -2.5159 -0.3614 41 1 3.0686 -3.2671 -0.9884 42 1 2.7144 -0.9768 -1.9193 43 1 4.2097 -1.0804 -0.9572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:50 Heat of formation + Delta-G solvation = -45.665272 kcal Electronic energy + Delta-G solvation = -22997.257622 eV Core-core repulsion = 19848.066269 eV Total energy + Delta-G solvation = -3149.191353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42704 -39.64026 -37.72159 -36.43135 -34.39489 -32.83330 -32.15293 -31.56244 -29.62428 -26.65165 -25.31523 -24.74298 -23.67232 -22.84495 -22.05974 -20.55723 -18.31254 -17.98564 -17.52225 -17.08582 -16.91501 -16.11931 -16.03248 -15.72434 -15.49173 -15.27541 -15.17769 -14.64663 -14.39552 -14.09218 -13.80522 -13.75165 -13.51031 -13.24102 -13.15076 -13.05177 -12.92869 -12.71112 -12.38265 -12.22766 -12.01292 -11.87997 -11.72251 -11.60947 -11.48575 -11.08350 -10.81394 -10.69309 -10.61159 -10.56306 -9.42429 -8.22420 -6.19699 1.28753 1.33520 1.41269 1.55963 1.62638 2.35087 2.72013 2.89222 3.07392 3.15555 3.59043 3.68508 3.90131 3.94892 4.01049 4.19570 4.23131 4.33992 4.40572 4.50795 4.58629 4.63555 4.69222 4.73909 4.77290 4.79788 4.84729 4.86261 5.00393 5.02340 5.06120 5.11347 5.18365 5.39600 5.45034 5.54581 5.61114 5.71358 5.84758 6.00966 6.18672 6.31495 6.42014 6.52678 6.85670 7.43679 8.93796 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029851 B = 0.004834 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.770043 B = 5790.325668 C = 5936.311397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.238 3.762 3 C 0.212 3.788 4 N -0.674 5.674 5 C 0.106 3.894 6 C -0.118 4.118 7 C -0.093 4.093 8 C 0.001 3.999 9 C -0.482 4.482 10 H 0.050 0.950 11 C 0.018 3.982 12 N -0.949 5.949 13 Si 0.930 3.070 14 H -0.281 1.281 15 H -0.304 1.304 16 H -0.253 1.253 17 C -0.119 4.119 18 C -0.084 4.084 19 C -0.136 4.136 20 C 0.057 3.943 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.177 4.177 24 H 0.372 0.628 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.126 0.874 40 H 0.035 0.965 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -19.554 7.632 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.080 4.080 3 C 0.117 3.883 4 N -0.308 5.308 5 C -0.004 4.004 6 C -0.156 4.156 7 C -0.131 4.131 8 C -0.018 4.018 9 C -0.520 4.520 10 H 0.068 0.932 11 C -0.179 4.179 12 N -0.590 5.590 13 Si 0.760 3.240 14 H -0.208 1.208 15 H -0.232 1.232 16 H -0.177 1.177 17 C -0.157 4.157 18 C -0.123 4.123 19 C -0.175 4.175 20 C -0.020 4.020 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.218 4.218 24 H 0.196 0.804 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.144 0.856 40 H 0.053 0.947 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.025 -19.149 8.042 20.794 hybrid contribution -0.424 0.996 -0.878 1.394 sum -1.448 -18.153 7.164 19.569 Atomic orbital electron populations 1.81191 1.14192 1.09504 1.09777 1.29379 0.95256 0.91557 0.91835 1.18756 0.80056 0.90607 0.98843 1.60474 1.17072 1.27827 1.25431 1.21360 0.96224 0.95770 0.87000 1.21899 0.97140 1.01721 0.94816 1.21292 0.99173 0.95748 0.96873 1.19248 0.93400 0.95044 0.94074 1.21225 0.97096 0.91151 1.42504 0.93223 1.25619 1.00062 0.96761 0.95435 1.70012 1.37035 1.00981 1.51014 0.86125 0.82732 0.76229 0.78884 1.20834 1.23243 1.17720 1.21834 0.98265 0.98220 0.97420 1.21232 0.98184 0.98142 0.94723 1.22314 1.04413 0.98506 0.92234 1.22749 0.97854 0.86741 0.94627 1.87947 1.71521 1.51828 1.19131 1.22657 0.97716 0.97494 0.83837 1.23077 1.04664 0.94360 0.99650 0.80432 0.92188 0.89716 0.92217 0.92017 0.92576 0.96568 0.93098 0.95786 0.92890 0.95139 0.92836 0.86496 0.89153 0.94673 0.85576 0.94685 0.86067 0.89675 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.06 18.54 20.01 0.37 -14.69 16 2 C 0.24 6.33 10.42 89.44 0.93 7.26 16 3 C 0.21 4.14 0.66 1.84 0.00 4.14 16 4 N -0.67 -15.99 6.00 -456.68 -2.74 -18.73 16 5 C 0.11 3.12 1.49 44.91 0.07 3.18 16 6 C -0.12 -3.45 4.79 30.59 0.15 -3.31 16 7 C -0.09 -3.16 5.41 30.59 0.17 -3.00 16 8 C 0.00 0.05 2.18 -11.54 -0.03 0.03 16 9 C -0.48 -25.60 7.19 25.60 0.18 -25.42 16 10 H 0.05 2.85 6.96 -2.91 -0.02 2.83 16 11 C 0.02 1.00 5.45 84.66 0.46 1.46 16 12 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 13 Si 0.93 46.19 24.37 68.60 1.67 47.86 16 14 H -0.28 -13.88 6.87 99.48 0.68 -13.19 16 15 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 16 H -0.25 -11.77 6.52 99.48 0.65 -11.13 16 17 C -0.12 -5.03 4.94 30.61 0.15 -4.88 16 18 C -0.08 -3.32 5.31 30.61 0.16 -3.16 16 19 C -0.14 -2.00 5.18 30.68 0.16 -1.84 16 20 C 0.06 0.83 6.61 72.01 0.48 1.31 16 21 O -0.39 -6.45 10.77 -148.98 -1.60 -8.05 16 22 C 0.06 0.91 6.61 72.01 0.48 1.38 16 23 C -0.18 -2.68 4.72 30.69 0.14 -2.53 16 24 H 0.37 7.33 8.11 -89.69 -0.73 6.60 16 25 H 0.06 1.71 5.59 -2.39 -0.01 1.70 16 26 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 27 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 0.74 7.19 -2.39 -0.02 0.73 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.02 1.11 3.29 -2.39 -0.01 1.10 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 2.46 7.22 -2.39 -0.02 2.44 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.03 0.61 7.39 -2.39 -0.02 0.59 16 39 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.03 0.62 7.38 -2.39 -0.02 0.61 16 41 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.08 1.37 6.72 -2.39 -0.02 1.35 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.94 321.28 1.71 -66.24 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.20 Total: 10.88 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 3.50 Total: -25.35 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -2.07 Total: -91.57 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -1.60 Total: -8.05 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -67.94 1.71 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.570 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds