Wall clock time and date at job start Tue Mar 31 2020 00:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47302 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00338 * 179.97438 * 14 13 12 17 17 H 1.09000 * 115.50893 * 325.58669 * 16 14 13 18 18 C 1.53006 * 117.42812 * 110.93725 * 16 14 13 19 19 H 1.08999 * 119.98647 * 355.26099 * 18 16 14 20 20 C 1.53002 * 117.43086 * 180.22285 * 16 14 13 21 21 H 1.08997 * 119.98566 * 5.86464 * 20 16 14 22 22 C 1.55931 * 117.17228 * 160.66759 * 20 16 14 23 23 H 1.08997 * 115.91930 * 263.04656 * 22 20 16 24 24 C 1.55921 * 104.49569 * 134.16757 * 22 20 16 25 25 C 1.54584 * 104.64693 * 289.71854 * 24 22 20 26 26 C 1.55930 * 104.64159 * 0.02562 * 25 24 22 27 27 H 1.08991 * 115.92413 * 199.96543 * 26 25 24 28 28 C 1.56953 * 100.65286 * 29.29922 * 22 20 16 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 32 32 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 33 33 H 1.09000 * 109.47339 * 299.99731 * 11 10 9 34 34 H 1.09002 * 109.46926 * 60.00010 * 11 10 9 35 35 H 1.09000 * 109.46966 * 300.00313 * 12 11 10 36 36 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 37 37 H 0.97001 * 120.00220 * 0.02562 * 13 12 11 38 38 H 1.08999 * 110.40675 * 48.51500 * 24 22 20 39 39 H 1.09002 * 110.40196 * 170.81210 * 24 22 20 40 40 H 1.08999 * 110.40127 * 118.78980 * 25 24 22 41 41 H 1.08993 * 110.40236 * 241.21430 * 25 24 22 42 42 H 1.08994 * 112.02609 * 170.30639 * 28 22 20 43 43 H 1.09003 * 112.02414 * 296.82849 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 6 1.8287 -6.1448 -0.0029 13 7 0.8767 -7.2582 -0.0041 14 6 1.3258 -8.5289 -0.0043 15 8 2.5182 -8.7506 -0.0040 16 6 0.3466 -9.6744 -0.0050 17 1 -0.5755 -9.5039 0.5507 18 6 0.2579 -10.5250 -1.2737 19 1 0.8315 -10.2464 -2.1577 20 6 0.9207 -11.0926 0.0000 21 1 1.9953 -11.2449 0.1004 22 6 -0.0269 -12.2428 0.4587 23 1 0.0662 -12.5500 1.5003 24 6 0.1788 -13.3651 -0.6040 25 6 -0.4747 -12.8100 -1.8902 26 6 -1.0131 -11.4042 -1.4837 27 1 -1.7889 -10.9872 -2.1257 28 6 -1.4196 -11.6600 0.0293 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6853 -3.7142 -0.8912 32 1 2.6841 -3.7150 0.8887 33 1 0.4367 -4.7622 0.8875 34 1 0.4374 -4.7617 -0.8925 35 1 2.4554 -6.2020 -0.8929 36 1 2.4552 -6.2030 0.8872 37 1 -0.0770 -7.0810 -0.0048 38 1 1.2415 -13.5457 -0.7651 39 1 -0.3182 -14.2826 -0.2887 40 1 0.2669 -12.7176 -2.6837 41 1 -1.2946 -13.4539 -2.2082 42 1 -2.2159 -12.3993 0.1145 43 1 -1.6613 -10.7420 0.5651 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177211904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:14 Heat of formation + Delta-G solvation = 1.572353 kcal Electronic energy + Delta-G solvation = -20808.865510 eV Core-core repulsion = 17661.722535 eV Total energy + Delta-G solvation = -3147.142976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62466 -39.27641 -36.17424 -34.55320 -33.82839 -32.08811 -29.46961 -29.30511 -28.40702 -25.81499 -24.01795 -22.57493 -22.03518 -21.33845 -20.73984 -19.32511 -18.93111 -17.71972 -17.19671 -16.31905 -16.06095 -15.82472 -15.55722 -14.71103 -14.37375 -14.24076 -13.71291 -13.39342 -13.20758 -12.98816 -12.79880 -12.41609 -11.92759 -11.83185 -11.65124 -11.58674 -11.51504 -11.27573 -11.15793 -10.91621 -10.66171 -10.61963 -10.54010 -10.19524 -10.01888 -9.99031 -9.86070 -9.18690 -9.09675 -8.88909 -7.02176 -6.11865 -3.11554 2.34715 2.97547 3.50526 3.52055 3.57101 3.71057 3.96016 4.05628 4.14072 4.59601 4.65910 4.66550 4.74083 4.76700 4.86784 4.91486 5.00616 5.03096 5.10015 5.19050 5.22879 5.38176 5.53687 5.55716 5.58089 5.60696 5.67663 5.73097 5.73849 5.83026 5.90594 5.92062 5.98046 6.00146 6.01143 6.18145 6.40682 6.69697 6.73569 7.43487 7.80911 8.15125 8.74855 9.21726 10.08034 10.22555 11.36987 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051823 B = 0.002301 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.174031 B =12167.825487 C =12416.829404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.332 4.332 8 H 0.066 0.934 9 N -0.745 5.745 10 C 0.162 3.838 11 C -0.138 4.138 12 C 0.123 3.877 13 N -0.723 5.723 14 C 0.542 3.458 15 O -0.543 6.543 16 C -0.166 4.166 17 H 0.125 0.875 18 C -0.135 4.135 19 H 0.114 0.886 20 C -0.128 4.128 21 H 0.123 0.877 22 C -0.075 4.075 23 H 0.100 0.900 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.072 4.072 27 H 0.102 0.898 28 C -0.139 4.139 29 H 0.254 0.746 30 H 0.367 0.633 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -28.406 -1.358 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.915 3.085 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.463 4.463 8 H 0.084 0.916 9 N -0.391 5.391 10 C 0.034 3.966 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.374 5.374 14 C 0.328 3.672 15 O -0.420 6.420 16 C -0.187 4.187 17 H 0.142 0.858 18 C -0.153 4.153 19 H 0.132 0.868 20 C -0.146 4.146 21 H 0.141 0.859 22 C -0.093 4.093 23 H 0.118 0.882 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.090 4.090 27 H 0.120 0.880 28 C -0.176 4.176 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.086 -26.897 -1.379 27.108 hybrid contribution -0.478 -1.445 0.032 1.522 sum -3.564 -28.342 -1.347 28.597 Atomic orbital electron populations 1.70858 1.06037 1.28371 1.53809 1.25828 0.97088 1.01087 1.00429 0.83174 0.73874 0.75167 0.76279 1.22262 1.22104 1.21342 1.20083 0.92136 0.85765 1.48314 0.91631 1.42353 1.04880 1.00995 1.90876 1.20455 0.93160 0.84667 0.98356 1.21958 0.99589 0.93524 1.02575 1.21346 0.91735 0.84477 1.02502 1.45987 1.10750 1.05572 1.75079 1.19570 0.88571 0.83255 0.75821 1.90697 1.16767 1.84807 1.49726 1.22329 1.01076 0.91421 1.03912 0.85759 1.23510 1.00027 1.00058 0.91752 0.86762 1.23554 0.99762 0.90292 1.01014 0.85877 1.23187 0.93701 0.93859 0.98571 0.88158 1.22517 1.01012 0.97313 0.94631 1.22498 1.00062 0.95208 0.97648 1.23482 0.94837 0.94221 0.96474 0.88015 1.24077 0.96801 1.01034 0.95715 0.93435 0.80040 0.95938 0.95944 0.91372 0.91375 0.91354 0.91300 0.76451 0.91424 0.91539 0.91441 0.91437 0.90772 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.57 13.70 55.49 0.76 -28.81 16 2 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 3 Si 1.08 26.33 29.92 -169.99 -5.09 21.24 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.33 -9.63 9.99 -15.06 -0.15 -9.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.75 -19.24 5.60 -59.91 -0.34 -19.58 16 10 C 0.16 3.32 6.26 -4.05 -0.03 3.29 16 11 C -0.14 -2.15 5.44 -26.73 -0.15 -2.29 16 12 C 0.12 1.74 5.67 -4.04 -0.02 1.71 16 13 N -0.72 -8.68 5.56 -60.30 -0.33 -9.02 16 14 C 0.54 7.10 7.61 -10.99 -0.08 7.02 16 15 O -0.54 -9.24 16.35 5.56 0.09 -9.15 16 16 C -0.17 -1.61 5.41 -91.77 -0.50 -2.10 16 17 H 0.12 0.97 6.00 -51.93 -0.31 0.66 16 18 C -0.13 -1.18 6.21 -88.30 -0.55 -1.73 16 19 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.13 -1.18 5.91 -88.32 -0.52 -1.70 16 21 H 0.12 1.35 7.83 -51.93 -0.41 0.94 16 22 C -0.08 -0.52 5.12 -85.35 -0.44 -0.96 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 24 C -0.12 -0.73 6.22 -24.34 -0.15 -0.88 16 25 C -0.12 -0.72 6.24 -24.33 -0.15 -0.87 16 26 C -0.07 -0.48 5.21 -84.29 -0.44 -0.92 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 C -0.14 -0.87 6.36 -21.41 -0.14 -1.01 16 29 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 30 H 0.37 9.51 6.50 -40.82 -0.27 9.25 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 38 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.49 5.92 -51.93 -0.31 0.18 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -34.23 342.73 -10.18 -44.41 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.03 Total: 7.46 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.41 Total: -11.72 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.09 Total: -57.41 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.24 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.23 -10.18 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177211904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.982 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds