Wall clock time and date at job start Tue Mar 31 2020 00:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48499 * 109.47382 * 270.00588 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00280 * 3 2 1 6 6 H 1.48498 * 109.47277 * 150.00127 * 3 2 1 7 7 C 1.38808 * 120.00734 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00373 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00226 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.53035 * 109.46457 * 174.99594 * 11 10 9 13 13 C 1.53186 * 109.31670 * 181.36795 * 12 11 10 14 14 N 1.46923 * 108.77583 * 305.36703 * 13 12 11 15 15 C 1.34786 * 120.62854 * 233.58212 * 14 13 12 16 16 O 1.21614 * 119.99909 * 5.22600 * 15 14 13 17 17 C 1.47101 * 119.99632 * 184.95017 * 15 14 13 18 18 C 1.32997 * 119.99740 * 175.27617 * 17 15 14 19 19 C 1.51401 * 136.31641 * 359.63003 * 18 17 15 20 20 C 1.53374 * 87.51836 * 206.05751 * 19 18 17 21 21 C 1.51405 * 136.31339 * 179.97438 * 18 17 15 22 22 C 1.46919 * 118.73911 * 53.86264 * 14 13 12 23 23 C 1.53048 * 109.44773 * 295.05672 * 11 10 9 24 24 H 0.96994 * 120.00542 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99646 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47353 * 59.99019 * 10 9 7 27 27 H 1.09004 * 109.46584 * 299.99210 * 10 9 7 28 28 H 1.09005 * 109.46521 * 55.02140 * 11 10 9 29 29 H 1.09005 * 109.49636 * 61.41641 * 12 11 10 30 30 H 1.08999 * 109.49709 * 301.32706 * 12 11 10 31 31 H 1.09007 * 109.58823 * 185.57955 * 13 12 11 32 32 H 1.09003 * 109.70467 * 65.22773 * 13 12 11 33 33 H 1.07997 * 120.00100 * 355.27328 * 17 15 14 34 34 H 1.08998 * 113.56192 * 320.63450 * 19 18 17 35 35 H 1.08999 * 113.56084 * 91.37324 * 19 18 17 36 36 H 1.09002 * 113.97119 * 220.29586 * 20 19 18 37 37 H 1.09005 * 113.71345 * 88.80414 * 20 19 18 38 38 H 1.09001 * 113.56352 * 268.62636 * 21 18 17 39 39 H 1.09001 * 113.56265 * 39.29127 * 21 18 17 40 40 H 1.09001 * 109.59295 * 65.92446 * 22 14 13 41 41 H 1.09007 * 109.58769 * 186.35435 * 22 14 13 42 42 H 1.08992 * 109.49765 * 298.57380 * 23 11 10 43 43 H 1.08998 * 109.49620 * 58.67139 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4974 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.6165 -2.1909 -0.0009 12 6 6.3806 -3.5110 0.1238 13 6 7.8850 -3.2244 0.1581 14 7 8.2421 -2.4299 -1.0251 15 6 9.2268 -2.8340 -1.8520 16 8 9.7646 -3.9106 -1.6766 17 6 9.6469 -1.9755 -2.9701 18 6 10.6800 -2.3299 -3.7289 19 6 11.6589 -3.4840 -3.7761 20 6 12.6481 -2.5300 -4.4571 21 6 11.4061 -1.7563 -4.9273 22 6 7.5097 -1.1833 -1.2863 23 6 6.0057 -1.4957 -1.3076 24 1 -0.4850 0.8399 0.0004 25 1 3.8646 -0.3618 0.0004 26 1 3.8493 -3.0413 -0.8918 27 1 3.8487 -3.0431 0.8882 28 1 5.8659 -1.5460 0.8418 29 1 6.1507 -4.1466 -0.7314 30 1 6.0855 -4.0167 1.0431 31 1 8.4365 -4.1646 0.1470 32 1 8.1323 -2.6664 1.0612 33 1 9.1163 -1.0574 -3.1749 34 1 11.9861 -3.8182 -2.7916 35 1 11.3344 -4.3047 -4.4158 36 1 13.2159 -2.9858 -5.2683 37 1 13.2741 -1.9753 -3.7581 38 1 11.0123 -2.1035 -5.8826 39 1 11.5248 -0.6735 -4.8876 40 1 7.7247 -0.4612 -0.4986 41 1 7.8134 -0.7763 -2.2509 42 1 5.7794 -2.1502 -2.1493 43 1 5.4439 -0.5670 -1.4069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204951402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:19 Heat of formation + Delta-G solvation = 15.070307 kcal Electronic energy + Delta-G solvation = -21518.119008 eV Core-core repulsion = 18371.561348 eV Total energy + Delta-G solvation = -3146.557661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.33128 -38.90177 -37.54819 -35.06120 -32.96344 -31.75871 -30.66418 -30.45017 -27.02807 -26.07360 -24.30704 -23.38794 -22.95196 -21.53327 -20.52095 -19.43449 -17.95217 -17.74702 -17.20974 -16.05615 -15.80147 -15.19679 -14.94128 -14.59847 -14.31638 -14.12671 -14.03540 -13.47809 -13.17179 -12.93987 -12.76844 -12.45755 -12.38284 -12.31327 -11.95884 -11.88328 -11.38797 -11.33824 -11.16016 -10.92100 -10.79672 -10.54635 -10.40988 -10.23031 -10.09267 -9.66541 -9.58383 -9.45152 -8.89984 -8.60826 -7.22758 -5.77024 -3.12276 1.16970 2.92676 3.20524 3.35143 3.36808 3.43503 4.00515 4.17205 4.41901 4.57939 4.62327 4.78526 4.84232 4.92294 4.98880 5.10455 5.20606 5.28410 5.31072 5.37707 5.43959 5.48335 5.48480 5.56356 5.65825 5.73958 5.74416 5.85188 5.88836 5.92330 5.97205 6.10391 6.13843 6.30067 6.36709 6.39706 6.55036 6.70472 6.81552 7.38238 7.99886 8.15404 8.42160 9.21427 9.93641 10.13843 11.41649 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.003381 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.605540 B = 8279.649788 C = 8922.075781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.162 3.838 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.553 3.447 16 O -0.549 6.549 17 C -0.201 4.201 18 C -0.064 4.064 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.109 4.109 22 C 0.104 3.896 23 C -0.127 4.127 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.873 -3.315 -7.003 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.339 5.339 15 C 0.344 3.656 16 O -0.429 6.429 17 C -0.221 4.221 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.146 4.146 22 C -0.019 4.019 23 C -0.165 4.165 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.905 -3.969 -6.890 26.144 hybrid contribution 0.243 1.469 0.065 1.490 sum 25.149 -2.500 -6.825 26.178 Atomic orbital electron populations 1.69696 1.05114 1.25792 1.57740 1.24678 0.95242 0.97193 1.02185 0.86549 0.79229 0.85035 0.77745 1.21055 1.21740 1.20345 1.19075 0.80722 0.94722 1.42741 0.89284 1.42730 1.03994 1.02245 1.91164 1.20649 0.88012 0.89200 0.98611 1.21363 0.96531 0.96268 0.97546 1.21890 0.93708 0.97833 1.02924 1.21610 0.95992 0.96627 0.86683 1.48008 1.35130 1.24473 1.26257 1.18394 0.79298 0.85882 0.82070 1.90740 1.56007 1.22591 1.73578 1.21740 0.99030 1.02465 0.98867 1.23471 0.91395 0.97387 0.94351 1.22200 0.93653 0.95912 1.02334 1.22739 0.95918 0.98595 1.00786 1.22360 0.95065 1.00739 0.96405 1.22014 0.92482 0.85468 1.01915 1.22029 0.93764 1.02147 0.98598 0.93074 0.80717 0.95545 0.95511 0.91054 0.91382 0.90496 0.89144 0.91624 0.84656 0.89731 0.88406 0.90421 0.89792 0.88077 0.90383 0.91269 0.89640 0.91256 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.46 13.97 55.49 0.78 -28.69 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -17.69 5.12 -59.91 -0.31 -18.00 16 10 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 11 C -0.10 -1.43 2.19 -90.58 -0.20 -1.63 16 12 C -0.12 -1.57 5.36 -26.62 -0.14 -1.71 16 13 C 0.11 1.37 6.44 -3.72 -0.02 1.34 16 14 N -0.61 -7.51 2.97 -173.90 -0.52 -8.03 16 15 C 0.55 7.44 7.64 -12.66 -0.10 7.34 16 16 O -0.55 -8.88 14.64 5.27 0.08 -8.80 16 17 C -0.20 -2.17 9.34 -37.81 -0.35 -2.52 16 18 C -0.06 -0.63 6.92 -100.48 -0.70 -1.32 16 19 C -0.10 -0.96 6.95 -27.56 -0.19 -1.15 16 20 C -0.14 -0.95 8.17 -26.18 -0.21 -1.17 16 21 C -0.11 -0.74 7.96 -27.39 -0.22 -0.96 16 22 C 0.10 1.15 6.35 -3.49 -0.02 1.13 16 23 C -0.13 -1.72 5.26 -26.38 -0.14 -1.86 16 24 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 25 H 0.36 8.11 4.70 -40.82 -0.19 7.91 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.18 5.91 -52.49 -0.31 0.87 16 34 H 0.08 0.92 7.59 -51.93 -0.39 0.52 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.78 5.37 -51.93 -0.28 0.51 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -33.29 339.28 -9.14 -42.43 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.00 Total: 5.39 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.57 Total: -6.52 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.05 Total: -54.71 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.29 -9.14 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204951402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.499 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds