Wall clock time and date at job start Tue Mar 31 2020 00:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48499 * 109.47382 * 270.00588 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00280 * 3 2 1 6 6 H 1.48498 * 109.47277 * 150.00127 * 3 2 1 7 7 C 1.38808 * 120.00734 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00373 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00226 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.53035 * 109.46457 * 174.99594 * 11 10 9 13 13 C 1.53186 * 109.31670 * 181.36795 * 12 11 10 14 14 N 1.46923 * 108.77583 * 305.36703 * 13 12 11 15 15 C 1.34786 * 120.62854 * 233.58212 * 14 13 12 16 16 O 1.21614 * 119.99909 * 5.22600 * 15 14 13 17 17 C 1.47101 * 119.99632 * 184.95017 * 15 14 13 18 18 C 1.32997 * 119.99740 * 175.27617 * 17 15 14 19 19 C 1.51401 * 136.31641 * 359.63003 * 18 17 15 20 20 C 1.53374 * 87.51836 * 206.05751 * 19 18 17 21 21 C 1.51405 * 136.31339 * 179.97438 * 18 17 15 22 22 C 1.46919 * 118.73911 * 53.86264 * 14 13 12 23 23 C 1.53048 * 109.44773 * 295.05672 * 11 10 9 24 24 H 0.96994 * 120.00542 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99646 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47353 * 59.99019 * 10 9 7 27 27 H 1.09004 * 109.46584 * 299.99210 * 10 9 7 28 28 H 1.09005 * 109.46521 * 55.02140 * 11 10 9 29 29 H 1.09005 * 109.49636 * 61.41641 * 12 11 10 30 30 H 1.08999 * 109.49709 * 301.32706 * 12 11 10 31 31 H 1.09007 * 109.58823 * 185.57955 * 13 12 11 32 32 H 1.09003 * 109.70467 * 65.22773 * 13 12 11 33 33 H 1.07997 * 120.00100 * 355.27328 * 17 15 14 34 34 H 1.08998 * 113.56192 * 320.63450 * 19 18 17 35 35 H 1.08999 * 113.56084 * 91.37324 * 19 18 17 36 36 H 1.09002 * 113.97119 * 220.29586 * 20 19 18 37 37 H 1.09005 * 113.71345 * 88.80414 * 20 19 18 38 38 H 1.09001 * 113.56352 * 268.62636 * 21 18 17 39 39 H 1.09001 * 113.56265 * 39.29127 * 21 18 17 40 40 H 1.09001 * 109.59295 * 65.92446 * 22 14 13 41 41 H 1.09007 * 109.58769 * 186.35435 * 22 14 13 42 42 H 1.08992 * 109.49765 * 298.57380 * 23 11 10 43 43 H 1.08998 * 109.49620 * 58.67139 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4974 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.6165 -2.1909 -0.0009 12 6 6.3806 -3.5110 0.1238 13 6 7.8850 -3.2244 0.1581 14 7 8.2421 -2.4299 -1.0251 15 6 9.2268 -2.8340 -1.8520 16 8 9.7646 -3.9106 -1.6766 17 6 9.6469 -1.9755 -2.9701 18 6 10.6800 -2.3299 -3.7289 19 6 11.6589 -3.4840 -3.7761 20 6 12.6481 -2.5300 -4.4571 21 6 11.4061 -1.7563 -4.9273 22 6 7.5097 -1.1833 -1.2863 23 6 6.0057 -1.4957 -1.3076 24 1 -0.4850 0.8399 0.0004 25 1 3.8646 -0.3618 0.0004 26 1 3.8493 -3.0413 -0.8918 27 1 3.8487 -3.0431 0.8882 28 1 5.8659 -1.5460 0.8418 29 1 6.1507 -4.1466 -0.7314 30 1 6.0855 -4.0167 1.0431 31 1 8.4365 -4.1646 0.1470 32 1 8.1323 -2.6664 1.0612 33 1 9.1163 -1.0574 -3.1749 34 1 11.9861 -3.8182 -2.7916 35 1 11.3344 -4.3047 -4.4158 36 1 13.2159 -2.9858 -5.2683 37 1 13.2741 -1.9753 -3.7581 38 1 11.0123 -2.1035 -5.8826 39 1 11.5248 -0.6735 -4.8876 40 1 7.7247 -0.4612 -0.4986 41 1 7.8134 -0.7763 -2.2509 42 1 5.7794 -2.1502 -2.1493 43 1 5.4439 -0.5670 -1.4069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204951402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:18 Heat of formation + Delta-G solvation = -5.327059 kcal Electronic energy + Delta-G solvation = -21519.003504 eV Core-core repulsion = 18371.561348 eV Total energy + Delta-G solvation = -3147.442157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29279 -39.66575 -38.64329 -36.64914 -34.52384 -33.07044 -32.22995 -31.31971 -28.47316 -26.68307 -25.61174 -24.46468 -24.10662 -22.91094 -21.68013 -20.44179 -19.64404 -18.72174 -18.30676 -16.91587 -16.65081 -16.47553 -16.11742 -15.91672 -15.68912 -15.31944 -15.17713 -14.85802 -14.49982 -14.21081 -14.00750 -13.67914 -13.34032 -13.27864 -13.09074 -12.89718 -12.76898 -12.61988 -12.22279 -12.17546 -11.89281 -11.87553 -11.69739 -11.51349 -11.42638 -11.39326 -10.96354 -10.59751 -10.23464 -9.57865 -9.29215 -8.02152 -5.36207 0.36488 1.38410 1.43709 1.51149 2.01771 2.27670 2.49925 3.27696 3.29064 3.54460 3.55758 3.75469 3.79188 3.86379 3.98909 4.09421 4.15746 4.25886 4.36211 4.46536 4.54814 4.60713 4.71333 4.72370 4.74395 4.84260 4.87797 4.89706 4.95967 5.02135 5.04596 5.06635 5.12795 5.19804 5.29445 5.35211 5.49084 5.55991 5.70378 5.75768 6.21598 6.43982 7.08736 7.18016 7.84009 8.05468 9.19687 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.003381 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.605540 B = 8279.649788 C = 8922.075781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.246 1.246 7 C -0.238 4.238 8 H 0.050 0.950 9 N -0.754 5.754 10 C 0.160 3.840 11 C -0.088 4.088 12 C -0.116 4.116 13 C 0.115 3.885 14 N -0.607 5.607 15 C 0.544 3.456 16 O -0.588 6.588 17 C -0.218 4.218 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.098 4.098 22 C 0.109 3.891 23 C -0.126 4.126 24 H 0.258 0.742 25 H 0.368 0.632 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.716 -1.394 -7.810 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.369 4.369 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.034 3.966 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.007 4.007 14 N -0.339 5.339 15 C 0.337 3.663 16 O -0.470 6.470 17 C -0.238 4.238 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.170 4.170 21 C -0.135 4.135 22 C -0.013 4.013 23 C -0.164 4.164 24 H 0.067 0.933 25 H 0.202 0.798 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.176 0.824 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 27.789 -2.062 -7.695 28.908 hybrid contribution -0.675 0.699 0.313 1.021 sum 27.113 -1.364 -7.382 28.133 Atomic orbital electron populations 1.69899 1.07370 1.26815 1.59651 1.25598 0.96192 1.01631 1.02450 0.85351 0.78779 0.78945 0.78398 1.19895 1.22426 1.17019 1.19032 0.82945 0.93364 1.41553 0.93164 1.42671 1.02280 1.04180 1.90910 1.20790 0.90805 0.87317 0.97719 1.21255 0.93147 0.97556 0.98686 1.21801 0.94011 0.96639 1.03023 1.21584 0.94991 0.96682 0.87454 1.48108 1.34940 1.24830 1.26007 1.18923 0.79072 0.85752 0.82570 1.90719 1.57376 1.24303 1.74637 1.21807 1.00194 1.03228 0.98613 1.23948 0.90582 0.97623 0.94912 1.22312 0.94991 0.96556 1.01519 1.22727 0.95734 0.97565 1.00956 1.22411 0.93923 1.01646 0.95504 1.22086 0.90222 0.85053 1.03941 1.21985 0.95695 1.01321 0.97384 0.93313 0.79771 0.96547 0.96051 0.90204 0.92481 0.89488 0.90147 0.89939 0.82417 0.92131 0.88291 0.88622 0.89528 0.86594 0.88803 0.89573 0.87357 0.92265 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.65 13.97 21.65 0.30 -63.34 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.96 44.34 27.74 68.60 1.90 46.24 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.25 -9.99 6.52 99.48 0.65 -9.35 16 7 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 N -0.75 -34.66 5.12 -343.46 -1.76 -36.42 16 10 C 0.16 6.00 5.65 86.38 0.49 6.49 16 11 C -0.09 -2.40 2.19 -10.77 -0.02 -2.42 16 12 C -0.12 -2.78 5.36 30.67 0.16 -2.61 16 13 C 0.12 2.60 6.44 86.36 0.56 3.16 16 14 N -0.61 -13.92 2.97 -822.33 -2.44 -16.36 16 15 C 0.54 14.08 7.64 86.57 0.66 14.74 16 16 O -0.59 -19.12 14.64 -4.07 -0.06 -19.18 16 17 C -0.22 -4.28 9.34 23.43 0.22 -4.06 16 18 C -0.07 -1.22 6.92 -17.17 -0.12 -1.33 16 19 C -0.12 -2.06 6.95 30.06 0.21 -1.85 16 20 C -0.13 -1.44 8.17 30.95 0.25 -1.19 16 21 C -0.10 -1.02 7.96 30.17 0.24 -0.78 16 22 C 0.11 2.07 6.35 86.51 0.55 2.62 16 23 C -0.13 -3.12 5.26 30.82 0.16 -2.96 16 24 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.37 15.66 4.70 -92.71 -0.44 15.23 16 26 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 2.02 7.00 -2.38 -0.02 2.00 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.16 2.22 5.91 -2.91 -0.02 2.21 16 34 H 0.06 1.35 7.59 -2.39 -0.02 1.33 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.59 5.37 -2.38 -0.01 1.57 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.96 7.15 -2.39 -0.02 1.95 16 Total: -1.00 -74.04 339.28 3.15 -70.89 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.50 Total: 24.70 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.71 Total: -6.54 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.90 Total: -116.12 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.24 kcal Total: -74.04 3.15 -70.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204951402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.565 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds