Wall clock time and date at job start Mon Mar 30 2020 23:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00207 * 2 1 4 4 H 1.48509 * 109.47264 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47161 * 30.00120 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00120 * 3 2 1 7 7 C 1.37875 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00436 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47269 * 179.97438 * 10 9 7 12 12 N 1.30269 * 126.28235 * 89.97290 * 11 10 9 13 13 N 1.28672 * 109.37841 * 180.02562 * 12 11 10 14 14 C 1.30268 * 109.38036 * 0.02562 * 13 12 11 15 15 C 1.50703 * 126.28043 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47376 * 90.02328 * 15 14 13 17 17 C 1.52997 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47060 * 65.00086 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46963 * 299.99499 * 19 18 17 21 21 C 1.52997 * 109.47092 * 60.00194 * 20 19 18 22 22 C 1.53002 * 109.46817 * 184.99998 * 17 16 15 23 23 O 1.34356 * 107.43981 * 0.23912 * 14 13 12 24 24 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47347 * 59.99344 * 9 7 2 26 26 H 1.09005 * 109.47090 * 299.99803 * 9 7 2 27 27 H 1.08999 * 109.47540 * 59.99946 * 10 9 7 28 28 H 1.09000 * 109.47106 * 299.99483 * 10 9 7 29 29 H 1.09001 * 109.47476 * 330.02207 * 15 14 13 30 30 H 1.09004 * 109.47360 * 210.02163 * 15 14 13 31 31 H 1.09001 * 109.46917 * 59.99537 * 16 15 14 32 32 H 1.09004 * 109.46741 * 300.00214 * 16 15 14 33 33 H 1.09002 * 109.47153 * 304.99767 * 17 16 15 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 36 36 H 1.09000 * 109.47437 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 38 38 H 1.09002 * 109.47067 * 300.00341 * 20 19 18 39 39 H 1.09000 * 109.47312 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47375 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47497 * 59.99850 * 21 20 19 42 42 H 1.09002 * 109.47075 * 299.99262 * 22 17 16 43 43 H 1.08996 * 109.47407 * 60.00219 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1054 -5.6348 -1.0486 13 7 0.4896 -6.7007 -0.6740 14 6 0.4616 -6.7489 0.6275 15 6 -0.1651 -7.8327 1.4665 16 6 0.8717 -8.9213 1.7510 17 6 0.2352 -10.0218 2.6022 18 6 -0.8682 -10.7137 1.7993 19 6 -1.5051 -11.8138 2.6508 20 6 -0.4384 -12.8392 3.0402 21 6 0.6650 -12.1474 3.8430 22 6 1.3022 -11.0471 2.9912 23 8 1.0889 -5.6523 1.0847 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8895 29 1 -1.0088 -8.2660 0.9293 30 1 -0.5134 -7.4077 2.4079 31 1 1.7154 -8.4880 2.2882 32 1 1.2200 -9.3462 0.8096 33 1 -0.1923 -9.5826 3.5036 34 1 -1.6284 -9.9833 1.5222 35 1 -0.4408 -11.1529 0.8980 36 1 -2.2909 -12.3071 2.0787 37 1 -1.9327 -11.3742 3.5519 38 1 -0.0109 -13.2788 2.1390 39 1 -0.8922 -13.6232 3.6464 40 1 1.4252 -12.8778 4.1201 41 1 0.2376 -11.7077 4.7442 42 1 1.7296 -11.4864 2.0898 43 1 2.0883 -10.5542 3.5632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256816162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:21 Heat of formation + Delta-G solvation = -18.634371 kcal Electronic energy + Delta-G solvation = -20858.591711 eV Core-core repulsion = 17710.572506 eV Total energy + Delta-G solvation = -3148.019205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.75291 -39.17694 -35.68031 -35.10940 -34.15538 -32.17212 -31.10689 -30.60396 -28.32192 -25.75835 -24.58419 -22.98979 -22.66394 -21.94871 -20.93364 -20.78351 -20.03235 -16.98707 -16.77420 -16.27719 -15.83277 -15.28472 -14.80928 -14.56018 -14.35522 -14.25539 -14.07881 -13.69364 -13.16496 -13.02187 -12.45397 -12.41175 -12.16634 -12.06836 -11.93492 -11.53085 -11.44202 -11.41755 -11.35136 -11.09197 -11.02532 -10.76702 -10.73904 -10.59137 -10.37154 -10.25313 -10.11118 -9.92270 -9.31910 -8.84282 -8.45999 -6.10132 -4.15064 1.60876 2.69257 2.84052 3.28245 3.34481 3.37181 4.11011 4.35581 4.36533 4.39787 4.48152 4.69324 4.78290 4.88027 5.00926 5.08221 5.15734 5.17250 5.22261 5.26258 5.27618 5.33112 5.39294 5.50559 5.63213 5.71455 5.76575 5.82100 5.84912 5.88898 5.92254 5.93880 5.95697 6.04088 6.10278 6.20841 6.21984 6.23923 6.62628 7.47958 7.56336 7.85364 8.20872 8.77419 8.90199 9.49797 11.01187 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002491 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.263180 B =11239.203087 C =11303.092953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.025 4.025 11 C 0.197 3.803 12 N -0.305 5.305 13 N -0.289 5.289 14 C 0.137 3.863 15 C -0.019 4.019 16 C -0.113 4.113 17 C -0.085 4.085 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.115 4.115 23 O -0.226 6.226 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -23.943 8.307 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.064 4.064 11 C -0.013 4.013 12 N -0.151 5.151 13 N -0.135 5.135 14 C -0.075 4.075 15 C -0.058 4.058 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.152 4.152 23 O -0.106 6.106 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.642 -24.146 7.058 25.164 hybrid contribution 0.497 1.318 1.153 1.820 sum -0.145 -22.828 8.210 24.260 Atomic orbital electron populations 1.69970 1.06175 1.26983 1.49851 1.25024 0.94891 0.99485 0.94909 0.86493 0.79729 0.82948 0.78245 1.20475 1.21157 1.19720 1.21071 0.93155 0.90225 1.51969 0.92043 1.19164 0.93611 0.89904 0.98391 1.20719 0.97874 0.83645 1.04132 1.28920 0.96562 0.97142 0.78689 1.74396 1.13489 1.01577 1.25633 1.74263 1.15870 1.14207 1.09207 1.27755 0.98383 0.89407 0.91947 1.20162 0.98048 0.89347 0.98194 1.21675 0.97703 0.94700 1.01048 1.21156 0.95902 0.94808 0.98443 1.21684 0.97805 0.97726 0.98498 1.21537 0.97693 0.96582 0.99939 1.21546 0.96471 0.97771 1.00026 1.21538 0.97906 0.97745 0.98505 1.21588 0.97537 0.96146 0.99969 1.84797 1.56696 1.30185 1.38918 0.92729 0.95446 0.96048 0.89627 0.88057 0.87430 0.88788 0.91242 0.90885 0.90758 0.91515 0.91670 0.92083 0.92009 0.92064 0.92307 0.92179 0.92006 0.91854 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.70 4.95 -27.88 -0.14 0.56 16 10 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 11 C 0.20 4.02 7.73 -12.94 -0.10 3.92 16 12 N -0.31 -6.54 12.22 32.55 0.40 -6.14 16 13 N -0.29 -5.59 12.22 32.55 0.40 -5.19 16 14 C 0.14 2.25 7.73 -12.94 -0.10 2.15 16 15 C -0.02 -0.20 5.60 -27.88 -0.16 -0.36 16 16 C -0.11 -1.03 4.66 -26.73 -0.12 -1.16 16 17 C -0.08 -0.62 2.19 -90.62 -0.20 -0.81 16 18 C -0.12 -0.84 4.96 -26.73 -0.13 -0.98 16 19 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 20 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 21 C -0.12 -0.75 5.92 -26.71 -0.16 -0.91 16 22 C -0.11 -0.80 5.21 -26.70 -0.14 -0.94 16 23 O -0.23 -4.24 10.87 5.39 0.06 -4.18 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 29 H 0.11 1.03 6.56 -51.93 -0.34 0.69 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -31.47 348.22 -7.73 -39.20 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -7.41 Total: -5.12 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.14 Total: -14.16 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 1.53 Total: -37.13 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.06 Total: -4.18 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.47 -7.73 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256816162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.564 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds