Wall clock time and date at job start Mon Mar 30 2020 23:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00207 * 2 1 4 4 H 1.48509 * 109.47264 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47161 * 30.00120 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00120 * 3 2 1 7 7 C 1.37875 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00436 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47269 * 179.97438 * 10 9 7 12 12 N 1.30269 * 126.28235 * 89.97290 * 11 10 9 13 13 N 1.28672 * 109.37841 * 180.02562 * 12 11 10 14 14 C 1.30268 * 109.38036 * 0.02562 * 13 12 11 15 15 C 1.50703 * 126.28043 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47376 * 90.02328 * 15 14 13 17 17 C 1.52997 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47060 * 65.00086 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46963 * 299.99499 * 19 18 17 21 21 C 1.52997 * 109.47092 * 60.00194 * 20 19 18 22 22 C 1.53002 * 109.46817 * 184.99998 * 17 16 15 23 23 O 1.34356 * 107.43981 * 0.23912 * 14 13 12 24 24 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47347 * 59.99344 * 9 7 2 26 26 H 1.09005 * 109.47090 * 299.99803 * 9 7 2 27 27 H 1.08999 * 109.47540 * 59.99946 * 10 9 7 28 28 H 1.09000 * 109.47106 * 299.99483 * 10 9 7 29 29 H 1.09001 * 109.47476 * 330.02207 * 15 14 13 30 30 H 1.09004 * 109.47360 * 210.02163 * 15 14 13 31 31 H 1.09001 * 109.46917 * 59.99537 * 16 15 14 32 32 H 1.09004 * 109.46741 * 300.00214 * 16 15 14 33 33 H 1.09002 * 109.47153 * 304.99767 * 17 16 15 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 36 36 H 1.09000 * 109.47437 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 38 38 H 1.09002 * 109.47067 * 300.00341 * 20 19 18 39 39 H 1.09000 * 109.47312 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47375 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47497 * 59.99850 * 21 20 19 42 42 H 1.09002 * 109.47075 * 299.99262 * 22 17 16 43 43 H 1.08996 * 109.47407 * 60.00219 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1054 -5.6348 -1.0486 13 7 0.4896 -6.7007 -0.6740 14 6 0.4616 -6.7489 0.6275 15 6 -0.1651 -7.8327 1.4665 16 6 0.8717 -8.9213 1.7510 17 6 0.2352 -10.0218 2.6022 18 6 -0.8682 -10.7137 1.7993 19 6 -1.5051 -11.8138 2.6508 20 6 -0.4384 -12.8392 3.0402 21 6 0.6650 -12.1474 3.8430 22 6 1.3022 -11.0471 2.9912 23 8 1.0889 -5.6523 1.0847 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8895 29 1 -1.0088 -8.2660 0.9293 30 1 -0.5134 -7.4077 2.4079 31 1 1.7154 -8.4880 2.2882 32 1 1.2200 -9.3462 0.8096 33 1 -0.1923 -9.5826 3.5036 34 1 -1.6284 -9.9833 1.5222 35 1 -0.4408 -11.1529 0.8980 36 1 -2.2909 -12.3071 2.0787 37 1 -1.9327 -11.3742 3.5519 38 1 -0.0109 -13.2788 2.1390 39 1 -0.8922 -13.6232 3.6464 40 1 1.4252 -12.8778 4.1201 41 1 0.2376 -11.7077 4.7442 42 1 1.7296 -11.4864 2.0898 43 1 2.0883 -10.5542 3.5632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256816162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:20 Heat of formation + Delta-G solvation = -38.812837 kcal Electronic energy + Delta-G solvation = -20859.466715 eV Core-core repulsion = 17710.572506 eV Total energy + Delta-G solvation = -3148.894209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.25010 -39.75807 -37.19889 -36.45724 -35.57491 -33.93183 -31.92230 -31.54235 -29.61578 -27.51003 -25.59346 -24.47659 -23.67676 -22.95720 -22.55447 -21.64836 -20.57889 -18.79828 -18.27530 -17.95194 -16.66892 -16.51586 -16.14565 -15.69660 -15.50218 -15.04893 -14.90425 -14.76598 -14.55568 -14.28469 -13.79515 -13.51796 -13.37967 -13.00212 -12.96640 -12.91794 -12.80162 -12.75337 -12.54801 -12.22432 -12.10923 -11.93825 -11.91236 -11.82855 -11.67191 -11.38413 -11.27513 -10.96556 -10.80561 -10.60651 -10.35975 -8.23777 -6.36757 0.15167 1.27702 1.33295 1.44098 1.45319 1.56482 2.40643 2.86440 3.11141 3.42171 3.71544 3.74884 3.88888 3.91705 4.11495 4.22002 4.29135 4.33636 4.45364 4.47491 4.51376 4.55948 4.56838 4.64810 4.70234 4.72083 4.80033 4.84425 4.88453 4.97488 5.09681 5.11955 5.24553 5.32807 5.36476 5.36830 5.37326 5.46046 5.47001 5.52757 5.66688 5.73076 6.08633 6.78509 7.26538 7.33641 8.88877 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002491 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.263180 B =11239.203087 C =11303.092953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.035 3.965 10 C -0.011 4.011 11 C 0.183 3.817 12 N -0.328 5.328 13 N -0.320 5.320 14 C 0.160 3.840 15 C -0.020 4.020 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.115 4.115 23 O -0.231 6.231 24 H 0.265 0.735 25 H -0.009 1.009 26 H -0.005 1.005 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -24.556 9.534 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.096 0.904 9 C -0.004 4.004 10 C -0.049 4.049 11 C -0.028 4.028 12 N -0.174 5.174 13 N -0.165 5.165 14 C -0.052 4.052 15 C -0.058 4.058 16 C -0.144 4.144 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.153 4.153 23 O -0.111 6.111 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.013 0.987 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.213 -24.790 8.275 26.135 hybrid contribution 0.164 1.385 0.798 1.607 sum 0.377 -23.405 9.073 25.105 Atomic orbital electron populations 1.70121 1.08142 1.28065 1.51190 1.26055 0.95747 1.03775 0.94399 0.85320 0.78725 0.77738 0.78493 1.19886 1.21058 1.17961 1.21555 0.94144 0.90939 1.51214 0.90385 1.18947 0.93960 0.92083 0.95369 1.20458 0.96688 0.81872 1.05887 1.28738 0.97462 0.97544 0.79067 1.74326 1.13975 1.02462 1.26619 1.74213 1.17394 1.14180 1.10755 1.28913 0.95622 0.88891 0.91765 1.20602 0.98578 0.88149 0.98468 1.21623 0.97221 0.94544 1.00974 1.21103 0.95957 0.94202 0.98308 1.21696 0.97745 0.98025 0.98377 1.21532 0.97770 0.96397 0.99961 1.21554 0.96412 0.97895 0.99996 1.21530 0.98021 0.97583 0.98409 1.21586 0.97477 0.96275 0.99942 1.84807 1.56999 1.30797 1.38524 0.92653 0.99018 0.98681 0.87293 0.86874 0.85800 0.86588 0.91483 0.91806 0.89890 0.91300 0.92300 0.91825 0.91653 0.92419 0.91646 0.91743 0.91710 0.92341 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.03 1.81 4.95 29.85 0.15 1.96 16 10 C -0.01 -0.43 5.78 29.85 0.17 -0.26 16 11 C 0.18 7.51 7.73 88.34 0.68 8.19 16 12 N -0.33 -14.22 12.22 -165.50 -2.02 -16.25 16 13 N -0.32 -12.38 12.22 -165.51 -2.02 -14.41 16 14 C 0.16 5.13 7.73 88.34 0.68 5.81 16 15 C -0.02 -0.39 5.60 29.85 0.17 -0.22 16 16 C -0.11 -1.75 4.66 30.59 0.14 -1.61 16 17 C -0.08 -0.97 2.19 -10.79 -0.02 -1.00 16 18 C -0.12 -1.49 4.96 30.59 0.15 -1.34 16 19 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 20 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 21 C -0.12 -1.26 5.92 30.61 0.18 -1.08 16 22 C -0.12 -1.41 5.21 30.61 0.16 -1.25 16 23 O -0.23 -8.55 10.87 -3.63 -0.04 -8.59 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 27 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 28 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 29 H 0.12 2.10 6.56 -2.39 -0.02 2.08 16 30 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.81 6.56 -2.39 -0.02 0.80 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.44 348.22 2.71 -65.72 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.97 Total: 6.86 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.52 Total: -21.96 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.76 Total: -87.14 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.04 Total: -8.59 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.44 2.71 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256816162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.912 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds