Wall clock time and date at job start Tue Mar 31 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48499 * 109.47279 * 270.00471 * 3 2 1 5 5 H 1.48504 * 109.46575 * 30.00308 * 3 2 1 6 6 H 1.48497 * 109.47432 * 149.99814 * 3 2 1 7 7 C 1.38815 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00831 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99664 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99667 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85207 * 336.19105 * 10 9 7 12 12 C 1.53782 * 113.61081 * 107.50697 * 10 9 7 13 13 C 1.53775 * 87.08646 * 89.11232 * 12 10 9 14 14 H 1.09006 * 113.68804 * 270.87303 * 13 12 10 15 15 C 1.52998 * 113.61811 * 139.97852 * 13 12 10 16 16 N 1.46500 * 109.46878 * 87.49989 * 15 13 12 17 17 C 1.34781 * 119.99519 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00374 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99729 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46883 * 180.02562 * 19 17 16 21 21 H 1.08996 * 110.43367 * 55.89653 * 20 19 17 22 22 C 1.51104 * 110.38687 * 293.54672 * 20 19 17 23 23 C 1.30527 * 111.10523 * 224.99781 * 22 20 19 24 24 C 1.51104 * 111.10149 * 359.61668 * 23 22 20 25 25 C 1.54635 * 104.67244 * 16.80267 * 24 23 22 26 26 C 1.53782 * 87.08017 * 25.42918 * 13 12 10 27 27 H 0.97004 * 120.00418 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99374 * 359.97438 * 9 7 2 29 29 H 1.08998 * 113.61643 * 334.55503 * 12 10 9 30 30 H 1.09002 * 113.61110 * 203.66018 * 12 10 9 31 31 H 1.09001 * 109.46898 * 327.50237 * 15 13 12 32 32 H 1.09000 * 109.47332 * 207.50269 * 15 13 12 33 33 H 0.96998 * 120.00198 * 0.02562 * 16 15 13 34 34 H 1.09001 * 109.47066 * 60.00628 * 19 17 16 35 35 H 1.09000 * 109.47246 * 300.00610 * 19 17 16 36 36 H 1.08002 * 124.44506 * 44.72791 * 22 20 19 37 37 H 1.07991 * 124.44863 * 179.73328 * 23 22 20 38 38 H 1.09003 * 110.57549 * 257.92824 * 24 23 22 39 39 H 1.08997 * 110.34841 * 135.56355 * 24 23 22 40 40 H 1.09000 * 111.04132 * 217.14124 * 25 24 23 41 41 H 1.08999 * 111.07124 * 93.22308 * 25 24 23 42 42 H 1.09001 * 113.61448 * 89.12195 * 26 13 12 43 43 H 1.09004 * 113.61775 * 219.93755 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0659 -3.5636 -0.4062 12 6 1.9980 -4.4027 1.3418 13 6 0.7198 -5.0795 0.8194 14 1 -0.1919 -4.5255 1.0433 15 6 0.6187 -6.5622 1.1832 16 7 -0.0141 -6.7004 2.4972 17 6 -0.2093 -7.9249 3.0257 18 8 0.1394 -8.9121 2.4136 19 6 -0.8608 -8.0672 4.3771 20 6 -0.9618 -9.5499 4.7409 21 1 0.0217 -10.0184 4.7051 22 6 -1.9162 -10.2572 3.8071 23 6 -2.7239 -11.0422 4.4667 24 6 -2.4367 -10.9963 5.9495 25 6 -1.5880 -9.7186 6.1447 26 6 1.2606 -4.8285 -0.5982 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.8276 -3.7489 2.1971 30 1 2.8267 -5.0941 1.4948 31 1 1.6174 -6.9978 1.2133 32 1 0.0188 -7.0799 0.4347 33 1 -0.2934 -5.9108 2.9866 34 1 -1.8594 -7.6313 4.3467 35 1 -0.2611 -7.5496 5.1259 36 1 -1.9311 -10.1268 2.7351 37 1 -3.4949 -11.6466 4.0122 38 1 -1.8735 -11.8771 6.2580 39 1 -3.3666 -10.9244 6.5136 40 1 -0.8180 -9.8719 6.9008 41 1 -2.2171 -8.8651 6.3977 42 1 1.8877 -5.6363 -0.9756 43 1 0.4945 -4.5198 -1.3095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263853929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:40 Heat of formation + Delta-G solvation = -2.094059 kcal Electronic energy + Delta-G solvation = -20865.540932 eV Core-core repulsion = 17718.238968 eV Total energy + Delta-G solvation = -3147.301963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12147 -38.86200 -38.09005 -34.60792 -33.21585 -31.82520 -30.15070 -29.14303 -27.61785 -25.27916 -25.04869 -23.62887 -21.72210 -20.84280 -20.41339 -18.92247 -18.34518 -17.39336 -16.90739 -16.18765 -16.05408 -15.39117 -15.19758 -14.81239 -14.21886 -14.09084 -13.57970 -13.48644 -12.90859 -12.81488 -12.31926 -12.15620 -12.07203 -12.04995 -11.92478 -11.49559 -11.39497 -11.35342 -11.05521 -10.96805 -10.86272 -10.49434 -10.19307 -10.08781 -9.72792 -9.71069 -9.44103 -9.07475 -8.96542 -8.89317 -7.02486 -5.83141 -3.12181 2.14047 2.67281 3.24344 3.40203 3.45616 3.47059 4.36324 4.39430 4.53695 4.63475 4.80405 5.00418 5.06195 5.07490 5.17614 5.21468 5.28821 5.32239 5.43052 5.43432 5.56415 5.62228 5.63708 5.69248 5.72774 5.86306 5.93782 5.96900 6.05284 6.10576 6.20230 6.35934 6.39249 6.47363 6.58909 6.72886 6.74624 6.89268 7.02753 7.55601 7.66865 8.26205 8.36120 9.46789 10.04373 10.38564 11.39333 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035128 B = 0.002588 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.886569 B =10815.922368 C =11192.914406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.120 4.120 14 H 0.092 0.908 15 C 0.131 3.869 16 N -0.726 5.726 17 C 0.509 3.491 18 O -0.545 6.545 19 C -0.134 4.134 20 C -0.053 4.053 21 H 0.089 0.911 22 C -0.138 4.138 23 C -0.185 4.185 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.148 4.148 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -19.099 10.699 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.378 5.378 17 C 0.295 3.705 18 O -0.423 6.423 19 C -0.174 4.174 20 C -0.072 4.072 21 H 0.107 0.893 22 C -0.156 4.156 23 C -0.203 4.203 24 C -0.136 4.136 25 C -0.161 4.161 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.409 -19.616 10.243 22.390 hybrid contribution -0.087 1.307 0.171 1.321 sum -3.496 -18.309 10.414 21.352 Atomic orbital electron populations 1.69655 1.05148 1.25804 1.57490 1.24764 0.95545 0.97805 1.02788 0.86168 0.78659 0.83659 0.77569 1.21646 1.21752 1.20701 1.19296 0.91128 0.83970 1.42940 0.90986 1.42173 1.05677 0.99441 1.87153 1.21057 0.95096 0.85589 0.92767 0.91980 1.23880 0.95687 0.99605 1.01723 1.22708 0.99517 0.93031 0.98576 0.88936 1.21452 0.97517 0.96883 0.83384 1.46137 1.62190 1.08271 1.21165 1.20687 0.78811 0.83124 0.87840 1.90684 1.51282 1.37539 1.62769 1.21732 1.02333 0.98446 0.94925 1.20811 0.99711 0.93380 0.93285 0.89306 1.23336 0.95324 0.97370 0.99595 1.23241 1.00308 1.01042 0.95742 1.21327 0.99718 0.98002 0.94529 1.22573 0.99147 0.98082 0.96264 1.23446 1.00491 0.99690 0.95170 0.93427 0.78123 0.91534 0.91445 0.91717 0.92000 0.76389 0.88775 0.88728 0.85658 0.86145 0.90953 0.91425 0.90859 0.90832 0.90502 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.61 9.97 -15.05 -0.15 -6.76 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.23 5.31 -52.64 -0.28 -17.51 16 10 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.76 7.43 -25.92 -0.19 -2.95 16 13 C -0.12 -1.77 3.63 -89.81 -0.33 -2.09 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.13 1.75 5.51 -4.04 -0.02 1.72 16 16 N -0.73 -8.60 5.56 -60.29 -0.33 -8.94 16 17 C 0.51 6.29 7.59 -10.98 -0.08 6.20 16 18 O -0.55 -8.62 14.68 5.56 0.08 -8.54 16 19 C -0.13 -1.20 5.12 -27.88 -0.14 -1.34 16 20 C -0.05 -0.50 2.54 -90.71 -0.23 -0.73 16 21 H 0.09 0.95 8.01 -51.93 -0.42 0.54 16 22 C -0.14 -1.46 9.19 -35.70 -0.33 -1.79 16 23 C -0.19 -1.68 10.77 -35.70 -0.38 -2.06 16 24 C -0.10 -0.74 6.81 -26.83 -0.18 -0.93 16 25 C -0.12 -0.90 6.71 -25.01 -0.17 -1.07 16 26 C -0.15 -2.36 7.39 -25.92 -0.19 -2.56 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.93 7.90 -40.82 -0.32 9.60 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 31 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.51 7.31 -52.49 -0.38 1.13 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.49 7.91 -51.93 -0.41 0.07 16 42 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -31.07 351.23 -9.65 -40.72 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.31 Total: 10.77 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.80 Total: -11.88 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.11 Total: -53.37 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.07 -9.65 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263853929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.628 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds