Wall clock time and date at job start Tue Mar 31 2020 00:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48499 * 109.47279 * 270.00471 * 3 2 1 5 5 H 1.48504 * 109.46575 * 30.00308 * 3 2 1 6 6 H 1.48497 * 109.47432 * 149.99814 * 3 2 1 7 7 C 1.38815 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00831 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99664 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99667 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85207 * 336.19105 * 10 9 7 12 12 C 1.53782 * 113.61081 * 107.50697 * 10 9 7 13 13 C 1.53775 * 87.08646 * 89.11232 * 12 10 9 14 14 H 1.09006 * 113.68804 * 270.87303 * 13 12 10 15 15 C 1.52998 * 113.61811 * 139.97852 * 13 12 10 16 16 N 1.46500 * 109.46878 * 87.49989 * 15 13 12 17 17 C 1.34781 * 119.99519 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00374 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99729 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46883 * 180.02562 * 19 17 16 21 21 H 1.08996 * 110.43367 * 55.89653 * 20 19 17 22 22 C 1.51104 * 110.38687 * 293.54672 * 20 19 17 23 23 C 1.30527 * 111.10523 * 224.99781 * 22 20 19 24 24 C 1.51104 * 111.10149 * 359.61668 * 23 22 20 25 25 C 1.54635 * 104.67244 * 16.80267 * 24 23 22 26 26 C 1.53782 * 87.08017 * 25.42918 * 13 12 10 27 27 H 0.97004 * 120.00418 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99374 * 359.97438 * 9 7 2 29 29 H 1.08998 * 113.61643 * 334.55503 * 12 10 9 30 30 H 1.09002 * 113.61110 * 203.66018 * 12 10 9 31 31 H 1.09001 * 109.46898 * 327.50237 * 15 13 12 32 32 H 1.09000 * 109.47332 * 207.50269 * 15 13 12 33 33 H 0.96998 * 120.00198 * 0.02562 * 16 15 13 34 34 H 1.09001 * 109.47066 * 60.00628 * 19 17 16 35 35 H 1.09000 * 109.47246 * 300.00610 * 19 17 16 36 36 H 1.08002 * 124.44506 * 44.72791 * 22 20 19 37 37 H 1.07991 * 124.44863 * 179.73328 * 23 22 20 38 38 H 1.09003 * 110.57549 * 257.92824 * 24 23 22 39 39 H 1.08997 * 110.34841 * 135.56355 * 24 23 22 40 40 H 1.09000 * 111.04132 * 217.14124 * 25 24 23 41 41 H 1.08999 * 111.07124 * 93.22308 * 25 24 23 42 42 H 1.09001 * 113.61448 * 89.12195 * 26 13 12 43 43 H 1.09004 * 113.61775 * 219.93755 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0659 -3.5636 -0.4062 12 6 1.9980 -4.4027 1.3418 13 6 0.7198 -5.0795 0.8194 14 1 -0.1919 -4.5255 1.0433 15 6 0.6187 -6.5622 1.1832 16 7 -0.0141 -6.7004 2.4972 17 6 -0.2093 -7.9249 3.0257 18 8 0.1394 -8.9121 2.4136 19 6 -0.8608 -8.0672 4.3771 20 6 -0.9618 -9.5499 4.7409 21 1 0.0217 -10.0184 4.7051 22 6 -1.9162 -10.2572 3.8071 23 6 -2.7239 -11.0422 4.4667 24 6 -2.4367 -10.9963 5.9495 25 6 -1.5880 -9.7186 6.1447 26 6 1.2606 -4.8285 -0.5982 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.8276 -3.7489 2.1971 30 1 2.8267 -5.0941 1.4948 31 1 1.6174 -6.9978 1.2133 32 1 0.0188 -7.0799 0.4347 33 1 -0.2934 -5.9108 2.9866 34 1 -1.8594 -7.6313 4.3467 35 1 -0.2611 -7.5496 5.1259 36 1 -1.9311 -10.1268 2.7351 37 1 -3.4949 -11.6466 4.0122 38 1 -1.8735 -11.8771 6.2580 39 1 -3.3666 -10.9244 6.5136 40 1 -0.8180 -9.8719 6.9008 41 1 -2.2171 -8.8651 6.3977 42 1 1.8877 -5.6363 -0.9756 43 1 0.4945 -4.5198 -1.3095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263853929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:39 Heat of formation + Delta-G solvation = -21.062991 kcal Electronic energy + Delta-G solvation = -20866.363486 eV Core-core repulsion = 17718.238968 eV Total energy + Delta-G solvation = -3148.124518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08251 -40.07267 -39.01996 -35.96173 -34.91694 -32.68035 -31.93773 -29.79306 -28.84365 -26.44296 -26.27810 -25.40635 -23.06503 -21.64959 -21.22632 -19.92157 -19.54359 -19.30005 -17.89168 -17.21232 -16.83749 -16.67799 -16.36232 -16.03326 -15.67688 -15.48082 -14.84759 -14.67243 -14.54348 -13.89827 -13.55753 -13.28406 -12.95432 -12.90900 -12.87798 -12.75817 -12.66840 -12.63224 -12.15724 -12.09250 -12.04963 -11.99092 -11.68830 -11.52345 -11.47698 -11.00484 -10.87518 -10.63122 -10.00782 -9.77867 -9.00311 -7.95673 -5.23963 1.40123 1.48219 1.49353 1.57787 1.71764 2.29940 2.55688 3.37002 3.63700 3.71927 3.74983 3.79752 3.85387 4.00366 4.08242 4.16882 4.32345 4.38139 4.41177 4.53777 4.59311 4.68740 4.72898 4.78703 4.79755 4.92249 4.98825 4.99480 5.01880 5.11122 5.12685 5.30314 5.30736 5.35988 5.43758 5.50424 5.57223 5.66168 5.70961 6.00639 6.28104 6.61976 7.31465 7.33113 8.10121 8.32563 9.27643 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035128 B = 0.002588 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.886569 B =10815.922368 C =11192.914406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.059 0.941 12 C -0.152 4.152 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.141 3.859 16 N -0.722 5.722 17 C 0.506 3.494 18 O -0.583 6.583 19 C -0.127 4.127 20 C -0.054 4.054 21 H 0.070 0.930 22 C -0.166 4.166 23 C -0.177 4.177 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -19.849 12.230 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.077 0.923 12 C -0.192 4.192 13 C -0.120 4.120 14 H 0.100 0.900 15 C 0.017 3.983 16 N -0.374 5.374 17 C 0.294 3.706 18 O -0.464 6.464 19 C -0.167 4.167 20 C -0.072 4.072 21 H 0.089 0.911 22 C -0.185 4.185 23 C -0.194 4.194 24 C -0.137 4.137 25 C -0.154 4.154 26 C -0.175 4.175 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.002 -20.394 11.789 23.746 hybrid contribution -0.179 1.427 -0.343 1.478 sum -3.181 -18.967 11.446 22.380 Atomic orbital electron populations 1.69803 1.06563 1.26092 1.59513 1.25549 0.96390 1.01054 1.03762 0.85151 0.77741 0.79561 0.77376 1.21539 1.22224 1.19428 1.19673 0.91524 0.85183 1.41042 0.90575 1.42301 1.05320 1.00541 1.87632 1.21383 0.95017 0.84907 0.95324 0.92272 1.23693 0.97256 0.99157 0.99114 1.22485 0.98321 0.93780 0.97452 0.90020 1.21232 0.97601 0.95306 0.84187 1.46101 1.61853 1.08788 1.20667 1.21314 0.78107 0.82415 0.88757 1.90670 1.52949 1.38740 1.64018 1.21774 1.03137 0.98628 0.93144 1.20806 0.98663 0.93326 0.94448 0.91144 1.23290 0.97032 0.99350 0.98785 1.23523 0.99415 0.99639 0.96862 1.21398 1.00605 0.98452 0.93286 1.22583 0.99460 0.98400 0.94973 1.23356 0.99975 0.98675 0.95543 0.93997 0.79353 0.93197 0.89158 0.91769 0.92402 0.75251 0.87207 0.86355 0.88094 0.85400 0.90328 0.89908 0.89562 0.89626 0.87830 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.25 9.97 84.03 0.84 -12.41 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.39 5.31 -320.44 -1.70 -37.09 16 10 C 0.14 5.45 4.56 45.52 0.21 5.66 16 11 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 12 C -0.15 -4.77 7.43 31.12 0.23 -4.53 16 13 C -0.10 -2.88 3.63 -10.27 -0.04 -2.92 16 14 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 15 C 0.14 3.55 5.51 86.38 0.48 4.03 16 16 N -0.72 -16.12 5.56 -463.05 -2.57 -18.69 16 17 C 0.51 12.02 7.59 87.66 0.67 12.68 16 18 O -0.58 -18.47 14.68 -3.03 -0.04 -18.52 16 19 C -0.13 -2.03 5.12 29.85 0.15 -1.88 16 20 C -0.05 -0.95 2.54 -10.85 -0.03 -0.98 16 21 H 0.07 1.49 8.01 -2.39 -0.02 1.47 16 22 C -0.17 -3.47 9.19 26.26 0.24 -3.23 16 23 C -0.18 -2.99 10.77 26.26 0.28 -2.71 16 24 C -0.10 -1.28 6.81 30.53 0.21 -1.07 16 25 C -0.12 -1.41 6.71 31.71 0.21 -1.20 16 26 C -0.14 -4.18 7.39 31.12 0.23 -3.95 16 27 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.37 19.70 7.90 -92.71 -0.73 18.96 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 31 H 0.06 1.67 7.84 -2.39 -0.02 1.65 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 7.64 8.47 -92.71 -0.79 6.86 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 2.56 7.31 -2.91 -0.02 2.54 16 37 H 0.13 1.88 8.06 -2.92 -0.02 1.86 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.84 7.91 -2.39 -0.02 0.83 16 42 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 43 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -67.53 351.23 1.62 -65.91 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.52 Total: 35.26 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.15 Total: -16.29 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -3.99 Total: -113.89 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.04 Total: -18.52 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.53 1.62 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263853929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.852 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds