Wall clock time and date at job start Tue Mar 31 2020 00:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.46866 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.88213 * 302.56996 * 11 10 9 13 13 C 1.55151 * 111.00316 * 66.45046 * 11 10 9 14 14 C 1.54327 * 102.94293 * 153.57571 * 13 11 10 15 15 N 1.47018 * 107.26764 * 337.80773 * 14 13 11 16 16 C 1.34783 * 125.64869 * 178.96079 * 15 14 13 17 17 O 1.21286 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99766 * 359.97438 * 16 15 14 19 19 C 1.52999 * 109.47142 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.34509 * 55.83183 * 19 18 16 21 21 C 1.51097 * 110.38548 * 293.54694 * 19 18 16 22 22 C 1.30533 * 111.10199 * 224.74932 * 21 19 18 23 23 C 1.51097 * 111.10233 * 0.02562 * 22 21 19 24 24 C 1.54632 * 110.38778 * 178.23908 * 19 18 16 25 25 C 1.47423 * 108.70928 * 358.93856 * 15 14 13 26 26 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.47375 * 299.99261 * 10 9 7 29 29 H 1.08995 * 109.47778 * 59.99907 * 10 9 7 30 30 H 1.09000 * 110.72117 * 271.94312 * 13 11 10 31 31 H 1.09000 * 110.72049 * 35.03664 * 13 11 10 32 32 H 1.09001 * 109.88327 * 97.22216 * 14 13 11 33 33 H 1.08992 * 109.88616 * 218.23602 * 14 13 11 34 34 H 1.09000 * 109.47015 * 299.99971 * 18 16 15 35 35 H 1.09001 * 109.47160 * 59.99986 * 18 16 15 36 36 H 1.07996 * 124.45338 * 44.77050 * 21 19 18 37 37 H 1.08002 * 124.44364 * 179.97438 * 22 21 19 38 38 H 1.09007 * 110.38495 * 135.25288 * 23 22 21 39 39 H 1.09008 * 110.38291 * 257.61967 * 23 22 21 40 40 H 1.08998 * 111.04243 * 261.47764 * 24 19 18 41 41 H 1.09006 * 111.03577 * 25.41964 * 24 19 18 42 42 H 1.09001 * 110.36862 * 265.29594 * 25 15 14 43 43 H 1.09003 * 110.37120 * 142.96286 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.3943 -4.7590 0.8557 13 6 0.2631 -4.8661 -1.3304 14 6 -0.1195 -6.3562 -1.4515 15 7 0.8351 -7.1197 -0.6346 16 6 0.8278 -8.4563 -0.4616 17 8 1.6681 -8.9820 0.2374 18 6 -0.2245 -9.2977 -1.1367 19 6 -0.0085 -10.7693 -0.7778 20 1 -0.0051 -10.8988 0.3045 21 6 1.2869 -11.2713 -1.3720 22 6 1.1273 -12.4428 -1.9252 23 6 -0.3013 -12.9169 -1.7927 24 6 -1.1043 -11.6479 -1.4245 25 6 1.8020 -6.1813 -0.0364 26 1 -0.4851 -0.8401 0.0004 27 1 0.3556 -2.3881 -0.0016 28 1 2.6853 -3.7141 -0.8911 29 1 2.6841 -3.7149 0.8888 30 1 -0.6289 -4.2429 -1.2649 31 1 0.8876 -4.5561 -2.1682 32 1 -1.1323 -6.5104 -1.0793 33 1 -0.0554 -6.6720 -2.4927 34 1 -1.2123 -8.9832 -0.7999 35 1 -0.1519 -9.1724 -2.2170 36 1 2.2221 -10.7320 -1.3425 37 1 1.9130 -12.9995 -2.4142 38 1 -0.6538 -13.3290 -2.7382 39 1 -0.3825 -13.6604 -0.9996 40 1 -1.8940 -11.8781 -0.7094 41 1 -1.5125 -11.1714 -2.3159 42 1 2.6965 -6.1123 -0.6554 43 1 2.0620 -6.4972 0.9739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265955040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:23 Heat of formation + Delta-G solvation = -35.215203 kcal Electronic energy + Delta-G solvation = -21263.020856 eV Core-core repulsion = 18114.282652 eV Total energy + Delta-G solvation = -3148.738204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33731 -39.72747 -38.55528 -36.74336 -34.12975 -32.65368 -31.53067 -30.28629 -29.78096 -27.42165 -25.95581 -24.47474 -23.93290 -21.50343 -21.35896 -20.41488 -19.49345 -19.38144 -18.08342 -17.59211 -17.00827 -16.65440 -16.31530 -15.88370 -15.61551 -15.55856 -15.09917 -14.90342 -14.22406 -13.97701 -13.88100 -13.50062 -13.10662 -12.91829 -12.79778 -12.76840 -12.68031 -12.61249 -12.25413 -12.07489 -12.00976 -11.89841 -11.85928 -11.75697 -11.67523 -11.28276 -10.95442 -10.85286 -9.80629 -9.71257 -9.12444 -8.41077 -5.35044 1.37390 1.58911 1.59997 1.69909 1.82058 1.93323 2.69938 3.27450 3.38930 3.56716 3.57774 3.71622 3.76682 3.92799 3.96236 4.12890 4.22571 4.29272 4.35022 4.44868 4.46999 4.54918 4.56258 4.65849 4.70308 4.75786 4.76417 4.90826 4.96993 4.98861 4.99686 5.08580 5.12950 5.19351 5.28797 5.31091 5.41568 5.57837 5.67905 5.97994 6.49447 6.50097 7.08266 7.11435 7.98557 8.09326 9.11531 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.058325 B = 0.002662 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.949912 B =10515.719425 C =10770.499876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.132 2.868 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.752 5.752 10 C 0.170 3.830 11 C -0.098 4.098 12 H 0.077 0.923 13 C -0.118 4.118 14 C 0.106 3.894 15 N -0.620 5.620 16 C 0.520 3.480 17 O -0.584 6.584 18 C -0.119 4.119 19 C -0.055 4.055 20 H 0.068 0.932 21 C -0.169 4.169 22 C -0.174 4.174 23 C -0.100 4.100 24 C -0.115 4.115 25 C 0.119 3.881 26 H 0.246 0.754 27 H 0.364 0.636 28 H 0.024 0.976 29 H 0.015 0.985 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 -24.305 -6.463 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.957 3.043 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.397 5.397 10 C 0.043 3.957 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.156 4.156 14 C -0.016 4.016 15 N -0.354 5.354 16 C 0.311 3.689 17 O -0.464 6.464 18 C -0.158 4.158 19 C -0.074 4.074 20 H 0.087 0.913 21 C -0.187 4.187 22 C -0.191 4.191 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.004 4.004 26 H 0.057 0.943 27 H 0.196 0.804 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.444 -23.057 -6.098 24.097 hybrid contribution 0.361 -1.276 0.367 1.376 sum -3.083 -24.332 -5.730 25.187 Atomic orbital electron populations 1.70930 1.07051 1.28063 1.56153 1.27180 0.97183 1.04554 1.00437 0.82554 0.73625 0.71504 0.76624 1.19926 1.21780 1.21513 1.20423 0.92328 0.87135 1.46852 0.91837 1.42471 1.04913 1.01647 1.90702 1.20566 0.93345 0.84099 0.97682 1.22359 0.97349 0.92832 0.99209 0.90469 1.22583 1.00744 0.95587 0.96713 1.22206 0.93144 0.90012 0.96227 1.48695 1.31489 1.05855 1.49360 1.21135 0.86363 0.80636 0.80741 1.90680 1.41821 1.72133 1.41761 1.21753 0.98005 0.93604 1.02432 1.20832 0.93569 0.93045 0.99920 0.91348 1.23267 0.98365 0.97833 0.99225 1.23534 0.98997 0.96649 0.99961 1.21403 0.91725 0.98104 1.02494 1.22569 0.96498 0.94793 1.01359 1.22013 0.92271 0.87518 0.98640 0.94308 0.80372 0.95797 0.96692 0.90078 0.90968 0.89085 0.88870 0.86380 0.86943 0.88310 0.85332 0.89668 0.90376 0.89529 0.89366 0.91396 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.70 21.65 0.30 -59.87 16 2 C -0.10 -5.90 5.50 84.86 0.47 -5.44 16 3 Si 1.13 51.95 29.92 68.60 2.05 54.00 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.34 -18.98 9.99 84.03 0.84 -18.14 16 8 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.75 -37.58 5.45 -343.44 -1.87 -39.45 16 10 C 0.17 6.77 5.71 86.38 0.49 7.27 16 11 C -0.10 -3.03 3.10 -9.40 -0.03 -3.05 16 12 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.12 -3.08 6.13 31.78 0.19 -2.88 16 14 C 0.11 2.03 6.49 86.73 0.56 2.59 16 15 N -0.62 -15.28 3.33 -811.78 -2.70 -17.98 16 16 C 0.52 13.26 7.61 87.66 0.67 13.93 16 17 O -0.58 -19.68 14.94 -3.05 -0.05 -19.73 16 18 C -0.12 -1.94 4.31 29.85 0.13 -1.81 16 19 C -0.05 -0.98 2.54 -10.86 -0.03 -1.01 16 20 H 0.07 1.48 8.01 -2.39 -0.02 1.46 16 21 C -0.17 -3.53 9.19 26.25 0.24 -3.29 16 22 C -0.17 -2.88 10.78 26.25 0.28 -2.60 16 23 C -0.10 -1.22 6.81 30.52 0.21 -1.01 16 24 C -0.11 -1.32 6.71 31.70 0.21 -1.11 16 25 C 0.12 3.41 6.38 86.86 0.55 3.96 16 26 H 0.25 15.02 6.78 -92.70 -0.63 14.39 16 27 H 0.36 18.43 6.37 -92.71 -0.59 17.84 16 28 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 2.55 7.31 -2.91 -0.02 2.53 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.78 7.91 -2.38 -0.02 0.76 16 42 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -71.87 345.76 3.05 -68.82 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.53 Total: 26.80 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.79 Total: -12.59 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.28 Total: -117.31 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.05 Total: 54.00 kcal Total: -71.87 3.05 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.609 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds