Wall clock time and date at job start Tue Mar 31 2020 00:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99752 * 2 1 4 4 H 1.48493 * 109.47268 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.46813 * 149.99970 * 3 2 1 7 7 C 1.38805 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47148 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91892 * 51.09375 * 11 10 9 13 13 C 1.55160 * 111.00107 * 287.19565 * 11 10 9 14 14 C 1.54323 * 102.94127 * 206.42505 * 13 11 10 15 15 N 1.47192 * 107.29513 * 22.28167 * 14 13 11 16 16 C 1.34771 * 125.73645 * 181.02615 * 15 14 13 17 17 O 1.21281 * 119.99819 * 179.86124 * 16 15 14 18 18 C 1.50704 * 120.00270 * 359.86941 * 16 15 14 19 19 C 1.52998 * 109.47284 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.34330 * 55.83116 * 19 18 16 21 21 C 1.51102 * 110.38832 * 293.54374 * 19 18 16 22 22 C 1.30524 * 111.10725 * 224.74969 * 21 19 18 23 23 C 1.51106 * 111.10308 * 0.02562 * 22 21 19 24 24 C 1.54634 * 110.38420 * 178.24184 * 19 18 16 25 25 C 1.47425 * 108.61291 * 0.91225 * 15 14 13 26 26 H 0.96994 * 119.99900 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47156 * 59.99817 * 10 9 7 29 29 H 1.09000 * 109.47405 * 299.99834 * 10 9 7 30 30 H 1.09004 * 110.71965 * 324.78457 * 13 11 10 31 31 H 1.09001 * 110.72402 * 88.06163 * 13 11 10 32 32 H 1.08999 * 109.88854 * 141.60703 * 14 13 11 33 33 H 1.09001 * 109.88086 * 262.62061 * 14 13 11 34 34 H 1.08997 * 109.46865 * 300.00069 * 18 16 15 35 35 H 1.09004 * 109.46846 * 59.99569 * 18 16 15 36 36 H 1.08003 * 124.44298 * 44.72966 * 21 19 18 37 37 H 1.07994 * 124.45047 * 179.97438 * 22 21 19 38 38 H 1.08989 * 110.38855 * 135.24347 * 23 22 21 39 39 H 1.09001 * 110.38159 * 257.50652 * 23 22 21 40 40 H 1.09002 * 111.03550 * 261.47285 * 24 19 18 41 41 H 1.08999 * 111.03977 * 25.41469 * 24 19 18 42 42 H 1.09002 * 110.36696 * 217.11260 * 25 15 14 43 43 H 1.08995 * 110.36608 * 94.90096 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3253 -4.6998 -0.7948 13 6 0.3765 -4.9644 1.3812 14 6 0.0009 -6.4606 1.4257 15 7 0.8840 -7.1618 0.4796 16 6 0.8600 -8.4823 0.2113 17 8 1.6373 -8.9519 -0.5925 18 6 -0.1328 -9.3753 0.9100 19 6 0.0498 -10.8159 0.4282 20 1 1.0792 -11.1395 0.5825 21 6 -0.3263 -10.9349 -1.0304 22 6 -1.0618 -11.9924 -1.2414 23 6 -1.2993 -12.7547 0.0415 24 6 -0.9299 -11.7585 1.1649 25 6 1.7982 -6.1779 -0.1283 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 -0.0016 28 1 2.6841 -3.7149 0.8888 29 1 2.6855 -3.7141 -0.8911 30 1 1.0706 -4.7170 2.1845 31 1 -0.5159 -4.3410 1.4356 32 1 0.1533 -6.8514 2.4318 33 1 -1.0407 -6.5902 1.1317 34 1 0.0311 -9.3283 1.9865 35 1 -1.1451 -9.0417 0.6816 36 1 -0.0262 -10.2364 -1.7975 37 1 -1.4503 -12.2837 -2.2060 38 1 -2.3463 -13.0465 0.1214 39 1 -0.6564 -13.6338 0.0852 40 1 -0.4356 -12.2675 1.9924 41 1 -1.8095 -11.2157 1.5109 42 1 1.9722 -6.4191 -1.1770 43 1 2.7423 -6.1506 0.4156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265955041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:27 Heat of formation + Delta-G solvation = -15.630553 kcal Electronic energy + Delta-G solvation = -21219.604878 eV Core-core repulsion = 18071.715928 eV Total energy + Delta-G solvation = -3147.888950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27720 -38.81081 -37.37642 -34.68150 -32.46393 -31.56797 -30.16568 -29.18541 -28.97452 -26.28675 -24.70530 -22.90331 -22.35494 -20.74604 -20.06565 -19.43797 -18.59941 -17.23615 -16.98184 -16.36392 -16.06857 -15.37362 -15.18783 -14.61936 -14.31385 -13.72153 -13.53135 -13.15689 -13.10341 -12.76386 -12.55573 -12.40922 -12.12372 -12.06919 -12.03057 -11.64680 -11.48947 -11.36671 -11.17129 -10.97847 -10.87432 -10.66927 -10.49839 -10.39796 -10.06531 -9.78031 -9.68419 -9.06484 -8.89481 -8.60097 -6.94654 -5.78852 -3.07542 2.14969 2.64699 2.99580 3.42740 3.48030 3.49433 4.26900 4.39107 4.52385 4.59880 4.66447 4.75142 4.91817 4.97330 5.10672 5.17375 5.22149 5.30842 5.32383 5.41150 5.48417 5.55151 5.56129 5.62295 5.66482 5.71195 5.89939 5.94789 6.01468 6.03335 6.05146 6.11583 6.21898 6.37416 6.40850 6.45106 6.71272 6.75427 6.82900 7.55287 7.68551 8.17866 8.40175 9.51530 10.08446 10.43351 11.44095 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051575 B = 0.002665 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.765388 B =10505.755755 C =10626.551741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.099 3.901 15 N -0.619 5.619 16 C 0.526 3.474 17 O -0.543 6.543 18 C -0.128 4.128 19 C -0.054 4.054 20 H 0.089 0.911 21 C -0.139 4.139 22 C -0.185 4.185 23 C -0.099 4.099 24 C -0.122 4.122 25 C 0.112 3.888 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -23.106 3.960 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.353 5.353 16 C 0.315 3.685 17 O -0.421 6.421 18 C -0.168 4.168 19 C -0.073 4.073 20 H 0.107 0.893 21 C -0.157 4.157 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.160 4.160 25 C -0.010 4.010 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.316 -23.327 3.542 23.827 hybrid contribution 0.102 1.108 -0.048 1.114 sum -3.214 -22.219 3.493 22.720 Atomic orbital electron populations 1.69657 1.05110 1.25676 1.57842 1.24740 0.95543 0.97715 1.03017 0.86178 0.78641 0.83767 0.77541 1.21712 1.21774 1.20756 1.19229 0.91067 0.84115 1.42617 0.91156 1.42312 1.05848 0.99839 1.89538 1.20551 0.92767 0.84887 0.98157 1.22570 0.98615 0.93756 0.97563 0.89725 1.22663 1.02135 0.93044 0.98086 1.22166 0.94030 0.93629 0.92563 1.48647 1.36668 1.06790 1.43169 1.20337 0.84769 0.80911 0.82484 1.90694 1.42015 1.73880 1.35498 1.21696 0.99426 0.94521 1.01116 1.20834 1.00410 0.92960 0.93066 0.89285 1.23338 0.97060 0.98148 0.97105 1.23241 1.01040 0.97455 0.98568 1.21325 1.01366 0.98171 0.92697 1.22559 0.99043 0.96857 0.97519 1.22234 0.92824 0.87033 0.98948 0.93511 0.78253 0.95966 0.96025 0.90270 0.89487 0.91600 0.91474 0.88881 0.88843 0.85639 0.86109 0.91397 0.90961 0.90853 0.90851 0.90548 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.05 5.55 -59.91 -0.33 -18.38 16 10 C 0.16 3.20 5.71 -4.04 -0.02 3.17 16 11 C -0.11 -1.64 3.05 -88.47 -0.27 -1.91 16 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.12 -1.64 6.37 -24.89 -0.16 -1.80 16 14 C 0.10 1.08 6.50 -2.97 -0.02 1.06 16 15 N -0.62 -8.05 3.33 -170.39 -0.57 -8.62 16 16 C 0.53 6.97 7.61 -10.99 -0.08 6.89 16 17 O -0.54 -9.01 14.94 5.56 0.08 -8.93 16 18 C -0.13 -1.20 4.32 -27.88 -0.12 -1.32 16 19 C -0.05 -0.52 2.54 -90.72 -0.23 -0.75 16 20 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 21 C -0.14 -1.50 9.19 -35.70 -0.33 -1.83 16 22 C -0.19 -1.71 10.78 -35.69 -0.38 -2.09 16 23 C -0.10 -0.75 6.81 -26.83 -0.18 -0.93 16 24 C -0.12 -0.90 6.71 -25.02 -0.17 -1.06 16 25 C 0.11 1.61 6.37 -2.53 -0.02 1.59 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.38 9.88 7.67 -40.82 -0.31 9.56 16 28 H 0.02 0.44 7.97 -51.93 -0.41 0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.58 7.31 -52.48 -0.38 1.19 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 42 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 43 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -31.78 347.67 -9.49 -41.27 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.38 Total: 5.62 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.23 Total: -6.26 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.18 Total: -54.18 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.78 -9.49 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.640 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds