Wall clock time and date at job start Tue Mar 31 2020 00:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99752 * 2 1 4 4 H 1.48493 * 109.47268 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.46813 * 149.99970 * 3 2 1 7 7 C 1.38805 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47148 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91892 * 51.09375 * 11 10 9 13 13 C 1.55160 * 111.00107 * 287.19565 * 11 10 9 14 14 C 1.54323 * 102.94127 * 206.42505 * 13 11 10 15 15 N 1.47192 * 107.29513 * 22.28167 * 14 13 11 16 16 C 1.34771 * 125.73645 * 181.02615 * 15 14 13 17 17 O 1.21281 * 119.99819 * 179.86124 * 16 15 14 18 18 C 1.50704 * 120.00270 * 359.86941 * 16 15 14 19 19 C 1.52998 * 109.47284 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.34330 * 55.83116 * 19 18 16 21 21 C 1.51102 * 110.38832 * 293.54374 * 19 18 16 22 22 C 1.30524 * 111.10725 * 224.74969 * 21 19 18 23 23 C 1.51106 * 111.10308 * 0.02562 * 22 21 19 24 24 C 1.54634 * 110.38420 * 178.24184 * 19 18 16 25 25 C 1.47425 * 108.61291 * 0.91225 * 15 14 13 26 26 H 0.96994 * 119.99900 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47156 * 59.99817 * 10 9 7 29 29 H 1.09000 * 109.47405 * 299.99834 * 10 9 7 30 30 H 1.09004 * 110.71965 * 324.78457 * 13 11 10 31 31 H 1.09001 * 110.72402 * 88.06163 * 13 11 10 32 32 H 1.08999 * 109.88854 * 141.60703 * 14 13 11 33 33 H 1.09001 * 109.88086 * 262.62061 * 14 13 11 34 34 H 1.08997 * 109.46865 * 300.00069 * 18 16 15 35 35 H 1.09004 * 109.46846 * 59.99569 * 18 16 15 36 36 H 1.08003 * 124.44298 * 44.72966 * 21 19 18 37 37 H 1.07994 * 124.45047 * 179.97438 * 22 21 19 38 38 H 1.08989 * 110.38855 * 135.24347 * 23 22 21 39 39 H 1.09001 * 110.38159 * 257.50652 * 23 22 21 40 40 H 1.09002 * 111.03550 * 261.47285 * 24 19 18 41 41 H 1.08999 * 111.03977 * 25.41469 * 24 19 18 42 42 H 1.09002 * 110.36696 * 217.11260 * 25 15 14 43 43 H 1.08995 * 110.36608 * 94.90096 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3253 -4.6998 -0.7948 13 6 0.3765 -4.9644 1.3812 14 6 0.0009 -6.4606 1.4257 15 7 0.8840 -7.1618 0.4796 16 6 0.8600 -8.4823 0.2113 17 8 1.6373 -8.9519 -0.5925 18 6 -0.1328 -9.3753 0.9100 19 6 0.0498 -10.8159 0.4282 20 1 1.0792 -11.1395 0.5825 21 6 -0.3263 -10.9349 -1.0304 22 6 -1.0618 -11.9924 -1.2414 23 6 -1.2993 -12.7547 0.0415 24 6 -0.9299 -11.7585 1.1649 25 6 1.7982 -6.1779 -0.1283 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 -0.0016 28 1 2.6841 -3.7149 0.8888 29 1 2.6855 -3.7141 -0.8911 30 1 1.0706 -4.7170 2.1845 31 1 -0.5159 -4.3410 1.4356 32 1 0.1533 -6.8514 2.4318 33 1 -1.0407 -6.5902 1.1317 34 1 0.0311 -9.3283 1.9865 35 1 -1.1451 -9.0417 0.6816 36 1 -0.0262 -10.2364 -1.7975 37 1 -1.4503 -12.2837 -2.2060 38 1 -2.3463 -13.0465 0.1214 39 1 -0.6564 -13.6338 0.0852 40 1 -0.4356 -12.2675 1.9924 41 1 -1.8095 -11.2157 1.5109 42 1 1.9722 -6.4191 -1.1770 43 1 2.7423 -6.1506 0.4156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265955041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:26 Heat of formation + Delta-G solvation = -34.395047 kcal Electronic energy + Delta-G solvation = -21220.418567 eV Core-core repulsion = 18071.715928 eV Total energy + Delta-G solvation = -3148.702639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27427 -39.66740 -38.47824 -36.42911 -33.99357 -32.66071 -31.60990 -30.25566 -29.76358 -27.56112 -26.04606 -24.24664 -23.80260 -21.46247 -21.32113 -20.36942 -19.44335 -19.13147 -18.07530 -17.49650 -16.85803 -16.58349 -16.27239 -15.99522 -15.43078 -15.31723 -14.92199 -14.78212 -14.16340 -13.95829 -13.78504 -13.51932 -13.01181 -12.94784 -12.87960 -12.78353 -12.74001 -12.65703 -12.23131 -12.11925 -12.05995 -11.99491 -11.80461 -11.71281 -11.65312 -11.60018 -10.93273 -10.81367 -9.78709 -9.65433 -8.99965 -7.95412 -5.23965 1.39151 1.48210 1.49587 1.57969 1.64610 1.99177 2.56245 3.34847 3.39976 3.64653 3.66215 3.74002 3.86909 3.96779 3.99804 4.27093 4.31136 4.37643 4.41711 4.51126 4.55653 4.59714 4.65100 4.68109 4.74816 4.80186 4.85438 4.98919 5.00070 5.02963 5.07344 5.12695 5.24007 5.26930 5.31795 5.39975 5.43979 5.50223 5.70031 5.99399 6.27147 6.55197 7.16288 7.34082 8.08565 8.33121 9.28030 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051575 B = 0.002665 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.765388 B =10505.755755 C =10626.551741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.165 3.835 11 C -0.097 4.097 12 H 0.073 0.927 13 C -0.118 4.118 14 C 0.105 3.895 15 N -0.621 5.621 16 C 0.520 3.480 17 O -0.585 6.585 18 C -0.119 4.119 19 C -0.054 4.054 20 H 0.070 0.930 21 C -0.169 4.169 22 C -0.175 4.175 23 C -0.100 4.100 24 C -0.114 4.114 25 C 0.118 3.882 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.028 0.972 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -24.430 5.605 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.156 4.156 14 C -0.017 4.017 15 N -0.354 5.354 16 C 0.311 3.689 17 O -0.465 6.465 18 C -0.158 4.158 19 C -0.073 4.073 20 H 0.088 0.912 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.005 4.005 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.943 -24.676 5.203 25.525 hybrid contribution 0.343 1.456 -0.631 1.623 sum -3.600 -23.220 4.572 23.938 Atomic orbital electron populations 1.69802 1.06498 1.26113 1.59429 1.25541 0.96428 1.01004 1.03654 0.85153 0.77759 0.79562 0.77365 1.21601 1.22022 1.19473 1.19616 0.91494 0.85368 1.41298 0.90800 1.42479 1.05683 1.00878 1.89408 1.20650 0.93382 0.84339 0.97846 1.22346 0.97676 0.92812 0.98870 0.90820 1.22609 1.01521 0.95158 0.96286 1.22257 0.94481 0.91304 0.93636 1.48740 1.36615 1.06746 1.43313 1.21117 0.84839 0.80985 0.81983 1.90677 1.43885 1.74579 1.37401 1.21750 0.98714 0.93257 1.02076 1.20831 1.00119 0.93761 0.92582 0.91165 1.23280 0.98936 0.98891 0.97624 1.23532 0.99308 0.96598 0.99845 1.21400 1.02533 0.98181 0.91590 1.22568 0.98896 0.96208 0.97485 1.22026 0.93233 0.86804 0.98457 0.93945 0.79174 0.95420 0.96583 0.90501 0.90091 0.88605 0.89510 0.86108 0.87233 0.88476 0.85488 0.89758 0.90310 0.89359 0.89422 0.91968 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -36.99 5.55 -343.45 -1.91 -38.89 16 10 C 0.16 6.44 5.71 86.38 0.49 6.93 16 11 C -0.10 -3.02 3.05 -9.40 -0.03 -3.05 16 12 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.12 -3.02 6.37 31.78 0.20 -2.82 16 14 C 0.10 2.00 6.50 86.70 0.56 2.57 16 15 N -0.62 -15.32 3.33 -811.37 -2.70 -18.02 16 16 C 0.52 13.32 7.61 87.66 0.67 13.98 16 17 O -0.58 -19.84 14.94 -3.03 -0.05 -19.89 16 18 C -0.12 -1.95 4.32 29.85 0.13 -1.82 16 19 C -0.05 -0.97 2.54 -10.86 -0.03 -1.00 16 20 H 0.07 1.50 8.01 -2.39 -0.02 1.48 16 21 C -0.17 -3.66 9.19 26.26 0.24 -3.42 16 22 C -0.17 -3.03 10.78 26.27 0.28 -2.75 16 23 C -0.10 -1.25 6.81 30.53 0.21 -1.04 16 24 C -0.11 -1.31 6.71 31.70 0.21 -1.10 16 25 C 0.12 3.38 6.37 86.85 0.55 3.93 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.38 19.70 7.67 -92.71 -0.71 18.98 16 28 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 2.61 7.31 -2.91 -0.02 2.59 16 37 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.79 7.91 -2.39 -0.02 0.77 16 42 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 43 H 0.07 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -69.47 347.67 2.72 -66.75 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.26 Total: 26.47 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.80 Total: -6.13 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.33 Total: -115.06 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -69.47 2.72 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.353 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds