Wall clock time and date at job start Tue Mar 31 2020 00:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48501 * 109.47069 * 270.00420 * 3 2 1 5 5 H 1.48498 * 109.46606 * 30.00049 * 3 2 1 6 6 H 1.48492 * 109.47237 * 149.99911 * 3 2 1 7 7 C 1.38816 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99267 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00151 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47037 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91907 * 308.90430 * 11 10 9 13 13 C 1.55155 * 111.00314 * 72.80740 * 11 10 9 14 14 C 1.54327 * 102.93990 * 153.57290 * 13 11 10 15 15 N 1.47015 * 107.27408 * 337.80736 * 14 13 11 16 16 C 1.34777 * 125.65042 * 178.96544 * 15 14 13 17 17 O 1.21282 * 120.00217 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99951 * 359.96819 * 16 15 14 19 19 C 1.53001 * 109.47107 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.34227 * 307.28853 * 19 18 16 21 21 C 1.51102 * 110.38647 * 69.69914 * 19 18 16 22 22 C 1.30524 * 111.10116 * 135.25180 * 21 19 18 23 23 C 1.51100 * 111.10812 * 359.97438 * 22 21 19 24 24 C 1.54629 * 110.38765 * 185.00218 * 19 18 16 25 25 C 1.47426 * 108.70225 * 358.93990 * 15 14 13 26 26 H 0.96998 * 119.99736 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00123 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46668 * 60.00028 * 10 9 7 29 29 H 1.09000 * 109.46654 * 300.00713 * 10 9 7 30 30 H 1.08996 * 110.72119 * 35.21423 * 13 11 10 31 31 H 1.09000 * 110.72301 * 271.93453 * 13 11 10 32 32 H 1.08999 * 109.87976 * 218.38614 * 14 13 11 33 33 H 1.09004 * 110.00819 * 97.29843 * 14 13 11 34 34 H 1.08998 * 109.47037 * 300.00825 * 18 16 15 35 35 H 1.09005 * 109.47015 * 60.00266 * 18 16 15 36 36 H 1.08000 * 124.44450 * 315.22490 * 21 19 18 37 37 H 1.08008 * 124.44541 * 179.97438 * 22 21 19 38 38 H 1.09000 * 110.39202 * 224.75690 * 23 22 21 39 39 H 1.08998 * 110.38571 * 102.37827 * 23 22 21 40 40 H 1.09007 * 111.03529 * 334.58963 * 24 19 18 41 41 H 1.09004 * 111.04001 * 98.52195 * 24 19 18 42 42 H 1.08998 * 110.36718 * 142.96820 * 25 15 14 43 43 H 1.09005 * 110.36600 * 265.29381 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3251 -4.7005 0.7906 13 6 0.3763 -4.9632 -1.3856 14 6 0.0007 -6.4594 -1.4314 15 7 0.8814 -7.1597 -0.4853 16 6 0.8556 -8.4806 -0.2185 17 8 1.6331 -8.9525 0.5839 18 6 -0.1393 -9.3711 -0.9170 19 6 0.0415 -10.8127 -0.4371 20 1 1.0824 -11.1191 -0.5419 21 6 -0.4081 -10.9497 0.9989 22 6 -1.1361 -12.0205 1.1632 23 6 -1.2939 -12.7758 -0.1359 24 6 -0.8829 -11.7647 -1.2310 25 6 1.7979 -6.1781 0.1228 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6853 -3.7150 0.8878 29 1 2.6840 -3.7142 -0.8921 30 1 1.0704 -4.7152 -2.1886 31 1 -0.5161 -4.3397 -1.4395 32 1 0.1530 -6.8492 -2.4378 33 1 -1.0403 -6.5917 -1.1364 34 1 -1.1508 -9.0362 -0.6872 35 1 0.0234 -9.3232 -1.9938 36 1 -0.1593 -10.2533 1.7860 37 1 -1.5689 -12.3265 2.1043 38 1 -2.3305 -13.0838 -0.2726 39 1 -0.6338 -13.6430 -0.1535 40 1 -1.7521 -11.2331 -1.6185 41 1 -0.3379 -12.2588 -2.0354 42 1 1.9719 -6.4203 1.1712 43 1 2.7412 -6.1510 -0.4228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265955042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:29 Heat of formation + Delta-G solvation = -15.876374 kcal Electronic energy + Delta-G solvation = -21210.589622 eV Core-core repulsion = 18062.690013 eV Total energy + Delta-G solvation = -3147.899609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27790 -38.82006 -37.38564 -34.68452 -32.46590 -31.56909 -30.16327 -29.19177 -28.98069 -26.28810 -24.70713 -22.90306 -22.35620 -20.74700 -20.06700 -19.42892 -18.60802 -17.25111 -16.98932 -16.35929 -16.05778 -15.39913 -15.18527 -14.61802 -14.31296 -13.72189 -13.52934 -13.15536 -13.10132 -12.77575 -12.55171 -12.40359 -12.14474 -12.07344 -12.03659 -11.64797 -11.49199 -11.35809 -11.17000 -10.98831 -10.87590 -10.66441 -10.50844 -10.39509 -10.06408 -9.78499 -9.68589 -9.07407 -8.89507 -8.60079 -6.94664 -5.78841 -3.07453 2.13696 2.64606 2.99976 3.42614 3.48019 3.49627 4.26976 4.38640 4.52157 4.59775 4.66464 4.75126 4.91804 4.96599 5.10485 5.17120 5.22544 5.30687 5.32313 5.40366 5.48234 5.55120 5.55957 5.62082 5.66455 5.70844 5.89856 5.93714 6.01555 6.03387 6.05406 6.11594 6.21991 6.37435 6.40125 6.44358 6.71378 6.74051 6.82883 7.55304 7.68548 8.17763 8.40151 9.51540 10.08466 10.43424 11.44116 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051814 B = 0.002659 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.262778 B =10528.980397 C =10647.128054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.099 3.901 15 N -0.618 5.618 16 C 0.526 3.474 17 O -0.543 6.543 18 C -0.128 4.128 19 C -0.054 4.054 20 H 0.090 0.910 21 C -0.139 4.139 22 C -0.184 4.184 23 C -0.099 4.099 24 C -0.123 4.123 25 C 0.112 3.888 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -23.134 -3.992 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.353 5.353 16 C 0.315 3.685 17 O -0.421 6.421 18 C -0.168 4.168 19 C -0.073 4.073 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.202 4.202 23 C -0.136 4.136 24 C -0.160 4.160 25 C -0.010 4.010 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.327 -23.355 -3.556 23.857 hybrid contribution 0.094 1.111 0.029 1.115 sum -3.233 -22.244 -3.527 22.753 Atomic orbital electron populations 1.69657 1.05112 1.25673 1.57837 1.24743 0.95542 0.97714 1.03020 0.86178 0.78669 0.83773 0.77511 1.21717 1.21772 1.20751 1.19231 0.91066 0.84116 1.42619 0.91156 1.42312 1.05847 0.99838 1.89537 1.20551 0.92769 0.84889 0.98159 1.22569 0.98616 0.93762 0.97566 0.89722 1.22660 1.02131 0.93045 0.98081 1.22139 0.94047 0.93644 0.92567 1.48610 1.36685 1.06819 1.43143 1.20345 0.84792 0.80916 0.82481 1.90695 1.42055 1.73776 1.35573 1.21698 0.99409 0.94536 1.01122 1.20839 1.00631 0.92902 0.92920 0.89191 1.23307 0.97012 0.98098 0.97320 1.23240 1.01051 0.97320 0.98565 1.21325 1.01378 0.98158 0.92704 1.22563 0.99273 0.96721 0.97446 1.22243 0.92786 0.87054 0.98945 0.93513 0.78254 0.96018 0.95968 0.90270 0.89492 0.91609 0.91499 0.88830 0.88870 0.85774 0.86093 0.91370 0.90939 0.90858 0.90847 0.90525 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.05 5.55 -59.91 -0.33 -18.39 16 10 C 0.16 3.20 5.71 -4.04 -0.02 3.17 16 11 C -0.11 -1.64 3.05 -88.47 -0.27 -1.91 16 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.12 -1.64 6.37 -24.90 -0.16 -1.80 16 14 C 0.10 1.08 6.49 -3.07 -0.02 1.06 16 15 N -0.62 -8.06 3.33 -170.52 -0.57 -8.62 16 16 C 0.53 6.98 7.65 -10.99 -0.08 6.89 16 17 O -0.54 -9.05 15.18 5.56 0.08 -8.96 16 18 C -0.13 -1.21 4.29 -27.88 -0.12 -1.33 16 19 C -0.05 -0.53 2.52 -90.72 -0.23 -0.76 16 20 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 21 C -0.14 -1.50 9.26 -35.70 -0.33 -1.83 16 22 C -0.18 -1.68 10.77 -35.70 -0.38 -2.06 16 23 C -0.10 -0.74 6.81 -26.84 -0.18 -0.92 16 24 C -0.12 -0.90 6.71 -25.02 -0.17 -1.06 16 25 C 0.11 1.61 6.38 -2.53 -0.02 1.60 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 27 H 0.38 9.88 7.67 -40.82 -0.31 9.56 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 30 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.12 1.53 7.58 -52.49 -0.40 1.13 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 43 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -31.82 348.10 -9.49 -41.31 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.39 Total: 5.57 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.23 Total: -6.22 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.17 Total: -54.19 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.82 -9.49 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.430 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds