Wall clock time and date at job start Tue Mar 31 2020 00:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48501 * 109.47069 * 270.00420 * 3 2 1 5 5 H 1.48498 * 109.46606 * 30.00049 * 3 2 1 6 6 H 1.48492 * 109.47237 * 149.99911 * 3 2 1 7 7 C 1.38816 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99267 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00151 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47037 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91907 * 308.90430 * 11 10 9 13 13 C 1.55155 * 111.00314 * 72.80740 * 11 10 9 14 14 C 1.54327 * 102.93990 * 153.57290 * 13 11 10 15 15 N 1.47015 * 107.27408 * 337.80736 * 14 13 11 16 16 C 1.34777 * 125.65042 * 178.96544 * 15 14 13 17 17 O 1.21282 * 120.00217 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99951 * 359.96819 * 16 15 14 19 19 C 1.53001 * 109.47107 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.34227 * 307.28853 * 19 18 16 21 21 C 1.51102 * 110.38647 * 69.69914 * 19 18 16 22 22 C 1.30524 * 111.10116 * 135.25180 * 21 19 18 23 23 C 1.51100 * 111.10812 * 359.97438 * 22 21 19 24 24 C 1.54629 * 110.38765 * 185.00218 * 19 18 16 25 25 C 1.47426 * 108.70225 * 358.93990 * 15 14 13 26 26 H 0.96998 * 119.99736 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00123 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46668 * 60.00028 * 10 9 7 29 29 H 1.09000 * 109.46654 * 300.00713 * 10 9 7 30 30 H 1.08996 * 110.72119 * 35.21423 * 13 11 10 31 31 H 1.09000 * 110.72301 * 271.93453 * 13 11 10 32 32 H 1.08999 * 109.87976 * 218.38614 * 14 13 11 33 33 H 1.09004 * 110.00819 * 97.29843 * 14 13 11 34 34 H 1.08998 * 109.47037 * 300.00825 * 18 16 15 35 35 H 1.09005 * 109.47015 * 60.00266 * 18 16 15 36 36 H 1.08000 * 124.44450 * 315.22490 * 21 19 18 37 37 H 1.08008 * 124.44541 * 179.97438 * 22 21 19 38 38 H 1.09000 * 110.39202 * 224.75690 * 23 22 21 39 39 H 1.08998 * 110.38571 * 102.37827 * 23 22 21 40 40 H 1.09007 * 111.03529 * 334.58963 * 24 19 18 41 41 H 1.09004 * 111.04001 * 98.52195 * 24 19 18 42 42 H 1.08998 * 110.36718 * 142.96820 * 25 15 14 43 43 H 1.09005 * 110.36600 * 265.29381 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3251 -4.7005 0.7906 13 6 0.3763 -4.9632 -1.3856 14 6 0.0007 -6.4594 -1.4314 15 7 0.8814 -7.1597 -0.4853 16 6 0.8556 -8.4806 -0.2185 17 8 1.6331 -8.9525 0.5839 18 6 -0.1393 -9.3711 -0.9170 19 6 0.0415 -10.8127 -0.4371 20 1 1.0824 -11.1191 -0.5419 21 6 -0.4081 -10.9497 0.9989 22 6 -1.1361 -12.0205 1.1632 23 6 -1.2939 -12.7758 -0.1359 24 6 -0.8829 -11.7647 -1.2310 25 6 1.7979 -6.1781 0.1228 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6853 -3.7150 0.8878 29 1 2.6840 -3.7142 -0.8921 30 1 1.0704 -4.7152 -2.1886 31 1 -0.5161 -4.3397 -1.4395 32 1 0.1530 -6.8492 -2.4378 33 1 -1.0403 -6.5917 -1.1364 34 1 -1.1508 -9.0362 -0.6872 35 1 0.0234 -9.3232 -1.9938 36 1 -0.1593 -10.2533 1.7860 37 1 -1.5689 -12.3265 2.1043 38 1 -2.3305 -13.0838 -0.2726 39 1 -0.6338 -13.6430 -0.1535 40 1 -1.7521 -11.2331 -1.6185 41 1 -0.3379 -12.2588 -2.0354 42 1 1.9719 -6.4203 1.1712 43 1 2.7412 -6.1510 -0.4228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265955042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:29 Heat of formation + Delta-G solvation = -34.658983 kcal Electronic energy + Delta-G solvation = -21211.404097 eV Core-core repulsion = 18062.690013 eV Total energy + Delta-G solvation = -3148.714084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27835 -39.67061 -38.49012 -36.43271 -33.99725 -32.66148 -31.60987 -30.25622 -29.77020 -27.56228 -26.04727 -24.24716 -23.80552 -21.46206 -21.32363 -20.36118 -19.44103 -19.13391 -18.09823 -17.49663 -16.84590 -16.58128 -16.30467 -15.98744 -15.42495 -15.31899 -14.92427 -14.78201 -14.16205 -13.96062 -13.79393 -13.51210 -13.00585 -12.96013 -12.89843 -12.77756 -12.73789 -12.65626 -12.23321 -12.13162 -12.06248 -11.98438 -11.79741 -11.71747 -11.65812 -11.60264 -10.93120 -10.82545 -9.78994 -9.65605 -8.99971 -7.95424 -5.23892 1.38742 1.48285 1.49515 1.58012 1.64192 1.99353 2.56256 3.34934 3.40120 3.64599 3.66076 3.73703 3.86844 3.96260 3.99902 4.26869 4.31041 4.36957 4.41729 4.51506 4.55431 4.59595 4.65068 4.68117 4.74131 4.80052 4.85295 4.99062 5.00019 5.02930 5.07116 5.12365 5.23994 5.26946 5.31622 5.40035 5.44089 5.50206 5.69233 5.99019 6.27098 6.54982 7.15884 7.34075 8.08576 8.33184 9.28028 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051814 B = 0.002659 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.262778 B =10528.980397 C =10647.128054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.165 3.835 11 C -0.098 4.098 12 H 0.073 0.927 13 C -0.118 4.118 14 C 0.105 3.895 15 N -0.620 5.620 16 C 0.520 3.480 17 O -0.585 6.585 18 C -0.119 4.119 19 C -0.055 4.055 20 H 0.070 0.930 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.100 4.100 24 C -0.115 4.115 25 C 0.118 3.882 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.016 0.984 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -24.446 -5.622 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.156 4.156 14 C -0.017 4.017 15 N -0.354 5.354 16 C 0.311 3.689 17 O -0.466 6.466 18 C -0.158 4.158 19 C -0.073 4.073 20 H 0.088 0.912 21 C -0.188 4.188 22 C -0.191 4.191 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.005 4.005 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.935 -24.692 -5.203 25.539 hybrid contribution 0.328 1.455 0.602 1.608 sum -3.607 -23.237 -4.601 23.961 Atomic orbital electron populations 1.69803 1.06500 1.26109 1.59426 1.25544 0.96426 1.01005 1.03656 0.85152 0.77645 0.79533 0.77501 1.21210 1.22193 1.19691 1.19617 0.91491 0.85369 1.41306 0.90804 1.42479 1.05681 1.00878 1.89409 1.20650 0.93383 0.84337 0.97851 1.22346 0.97678 0.92819 0.98868 0.90817 1.22606 1.01518 0.95151 0.96288 1.22231 0.94496 0.91324 0.93642 1.48702 1.36623 1.06776 1.43285 1.21122 0.84857 0.80985 0.81972 1.90678 1.43940 1.74482 1.37498 1.21752 0.98678 0.93287 1.02081 1.20832 1.00110 0.93717 0.92665 0.91222 1.23256 0.98952 0.98876 0.97734 1.23531 0.99308 0.96454 0.99817 1.21401 1.02567 0.98163 0.91590 1.22572 0.99264 0.96040 0.97327 1.22037 0.93202 0.86815 0.98463 0.93948 0.79176 0.96585 0.95406 0.90495 0.90100 0.88611 0.89542 0.87238 0.86102 0.88463 0.85400 0.89703 0.90327 0.89397 0.89431 0.91935 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -13.66 9.99 84.04 0.84 -12.82 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -36.99 5.55 -343.44 -1.91 -38.89 16 10 C 0.16 6.44 5.71 86.38 0.49 6.93 16 11 C -0.10 -3.02 3.05 -9.40 -0.03 -3.05 16 12 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.12 -3.02 6.37 31.78 0.20 -2.82 16 14 C 0.10 2.00 6.49 86.73 0.56 2.57 16 15 N -0.62 -15.33 3.33 -811.79 -2.70 -18.03 16 16 C 0.52 13.34 7.65 87.66 0.67 14.01 16 17 O -0.59 -19.92 15.18 -3.04 -0.05 -19.97 16 18 C -0.12 -1.95 4.29 29.85 0.13 -1.83 16 19 C -0.05 -0.98 2.52 -10.86 -0.03 -1.01 16 20 H 0.07 1.52 7.90 -2.38 -0.02 1.50 16 21 C -0.17 -3.63 9.26 26.26 0.24 -3.38 16 22 C -0.17 -2.95 10.77 26.26 0.28 -2.67 16 23 C -0.10 -1.24 6.81 30.53 0.21 -1.03 16 24 C -0.11 -1.32 6.71 31.70 0.21 -1.11 16 25 C 0.12 3.38 6.38 86.86 0.55 3.93 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.38 19.70 7.67 -92.71 -0.71 18.99 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 30 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 34 H 0.11 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.10 2.55 7.58 -2.91 -0.02 2.53 16 37 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.78 7.91 -2.38 -0.02 0.77 16 41 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.07 1.99 8.04 -2.38 -0.02 1.97 16 Total: -1.00 -69.49 348.10 2.73 -66.77 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.26 Total: 26.43 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.81 Total: -6.03 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.32 Total: -115.07 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.49 2.73 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.106 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds