Wall clock time and date at job start Tue Mar 31 2020 00:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48491 * 109.47404 * 270.00286 * 3 2 1 5 5 H 1.48501 * 109.46822 * 30.00635 * 3 2 1 6 6 H 1.48502 * 109.47019 * 150.00159 * 3 2 1 7 7 C 1.38812 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99882 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99898 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46731 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.88876 * 51.11905 * 11 10 9 13 13 C 1.55154 * 111.00729 * 287.19643 * 11 10 9 14 14 C 1.54327 * 102.94372 * 206.42528 * 13 11 10 15 15 N 1.47024 * 107.26851 * 22.19158 * 14 13 11 16 16 C 1.34780 * 125.64847 * 181.32598 * 15 14 13 17 17 O 1.21278 * 120.00386 * 179.69053 * 16 15 14 18 18 C 1.50707 * 119.99690 * 359.68630 * 16 15 14 19 19 C 1.53003 * 109.46952 * 179.97438 * 18 16 15 20 20 H 1.09000 * 110.34644 * 304.17399 * 19 18 16 21 21 C 1.51104 * 110.38240 * 66.45622 * 19 18 16 22 22 C 1.30530 * 111.10320 * 135.24671 * 21 19 18 23 23 C 1.51107 * 111.10236 * 359.97438 * 22 21 19 24 24 C 1.54628 * 110.38509 * 181.75644 * 19 18 16 25 25 C 1.47426 * 108.70449 * 1.05970 * 15 14 13 26 26 H 0.96999 * 120.00192 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47230 * 60.00539 * 10 9 7 29 29 H 1.09000 * 109.47013 * 299.99622 * 10 9 7 30 30 H 1.09005 * 110.72068 * 324.78745 * 13 11 10 31 31 H 1.08999 * 110.72351 * 88.06507 * 13 11 10 32 32 H 1.08997 * 109.88646 * 262.77582 * 14 13 11 33 33 H 1.09000 * 109.88486 * 141.60868 * 14 13 11 34 34 H 1.08997 * 109.47117 * 300.00376 * 18 16 15 35 35 H 1.09002 * 109.46743 * 60.00082 * 18 16 15 36 36 H 1.07994 * 124.45344 * 315.27267 * 21 19 18 37 37 H 1.07990 * 124.45222 * 180.02562 * 22 21 19 38 38 H 1.09005 * 110.38689 * 102.37280 * 23 22 21 39 39 H 1.08998 * 110.38894 * 224.63962 * 23 22 21 40 40 H 1.08997 * 111.04441 * 334.59575 * 24 19 18 41 41 H 1.09007 * 111.03714 * 98.52797 * 24 19 18 42 42 H 1.09004 * 110.36499 * 94.71384 * 25 15 14 43 43 H 1.09000 * 110.36586 * 217.02876 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0032 12 1 5.8822 -1.4920 0.7896 13 6 6.0838 -1.6679 -1.3870 14 6 7.5674 -2.0905 -1.4333 15 7 7.7338 -3.2034 -0.4870 16 6 8.8918 -3.8378 -0.2163 17 8 8.9130 -4.7433 0.5902 18 6 10.1601 -3.4221 -0.9161 19 6 11.3196 -4.2948 -0.4313 20 1 11.4073 -4.2400 0.6538 21 6 11.1205 -5.7265 -0.8716 22 6 12.2266 -6.2298 -1.3480 23 6 13.3476 -5.2174 -1.3055 24 6 12.6412 -3.8569 -1.1040 25 6 6.4257 -3.5061 0.1216 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0014 28 1 3.8485 -3.0418 -0.8925 29 1 3.8492 -3.0430 0.8875 30 1 5.5217 -2.1451 -2.1898 31 1 5.9901 -0.5832 -1.4410 32 1 8.2006 -1.2543 -1.1371 33 1 7.8285 -2.4176 -2.4397 34 1 10.0381 -3.5443 -1.9923 35 1 10.3735 -2.3772 -0.6910 36 1 10.1858 -6.2629 -0.8017 37 1 12.3273 -7.2371 -1.7240 38 1 14.0155 -5.4253 -0.4695 39 1 13.9017 -5.2247 -2.2441 40 1 12.4510 -3.3697 -2.0603 41 1 13.2197 -3.2092 -0.4451 42 1 5.9304 -4.3097 -0.4236 43 1 6.5488 -3.7778 1.1700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265955043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:33 Heat of formation + Delta-G solvation = -11.237715 kcal Electronic energy + Delta-G solvation = -21284.138022 eV Core-core repulsion = 18136.439560 eV Total energy + Delta-G solvation = -3147.698462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.36351 -38.89285 -37.48081 -34.87741 -32.50989 -31.65294 -30.50600 -29.31729 -29.13120 -26.47963 -24.81926 -22.97974 -22.03212 -20.79322 -20.26869 -19.50011 -18.70532 -17.65358 -17.07764 -16.40372 -16.12175 -15.75096 -14.93700 -14.70780 -14.42479 -13.85144 -13.63591 -13.38214 -13.08455 -12.91665 -12.55683 -12.47105 -12.21088 -12.12376 -12.08877 -11.79040 -11.61278 -11.53172 -11.40362 -11.02937 -10.99446 -10.71472 -10.63566 -10.53275 -10.14736 -9.82114 -9.61591 -9.11433 -8.92927 -8.68738 -7.26611 -5.79160 -3.15174 2.09847 2.57604 2.91174 3.34259 3.36073 3.42668 4.20076 4.34267 4.47636 4.56164 4.59089 4.61681 4.79924 4.87514 4.99322 5.11135 5.15520 5.18209 5.27094 5.34061 5.39086 5.48639 5.51798 5.53731 5.59445 5.65971 5.73490 5.80398 5.86316 5.89948 5.91030 6.00336 6.08525 6.16301 6.29696 6.38488 6.60675 6.70034 6.70411 7.46554 7.96735 8.10553 8.39649 9.18365 9.90432 10.10045 11.39233 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047368 B = 0.002879 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.977791 B = 9722.958089 C =10072.457856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.169 3.831 11 C -0.111 4.111 12 H 0.084 0.916 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.619 5.619 16 C 0.526 3.474 17 O -0.541 6.541 18 C -0.128 4.128 19 C -0.054 4.054 20 H 0.089 0.911 21 C -0.139 4.139 22 C -0.184 4.184 23 C -0.099 4.099 24 C -0.122 4.122 25 C 0.113 3.887 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.470 -6.625 -4.920 27.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.102 0.898 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.354 5.354 16 C 0.315 3.685 17 O -0.418 6.418 18 C -0.167 4.167 19 C -0.073 4.073 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.202 4.202 23 C -0.136 4.136 24 C -0.160 4.160 25 C -0.009 4.009 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 26.324 -7.229 -4.476 27.663 hybrid contribution 0.369 1.282 -0.037 1.334 sum 26.693 -5.947 -4.513 27.718 Atomic orbital electron populations 1.69701 1.05111 1.25845 1.57511 1.24684 0.95249 0.97230 1.02045 0.86535 0.79205 0.84979 0.77729 1.21052 1.21727 1.20370 1.19056 0.80564 0.94780 1.43041 0.89181 1.42662 1.04032 1.02084 1.91238 1.20529 0.86819 0.89509 0.99033 1.22626 0.96750 0.96179 0.97453 0.89803 1.22700 0.93088 1.02193 0.98279 1.22120 0.98479 0.88986 0.92775 1.48606 1.08338 1.35314 1.43111 1.20350 0.83863 0.81831 0.82440 1.90700 1.85780 1.30039 1.35328 1.21699 0.92291 1.01345 1.01414 1.20836 0.92877 0.92604 1.00974 0.89249 1.23333 0.98695 0.96118 0.97561 1.23246 0.95293 0.99550 1.02147 1.21327 0.97207 0.93330 1.01715 1.22556 0.95466 0.97101 1.00855 1.22224 0.82115 0.97464 0.99144 0.93031 0.80675 0.95071 0.95161 0.89898 0.89913 0.91530 0.91430 0.88865 0.88868 0.85646 0.86098 0.90936 0.91375 0.90878 0.90827 0.91079 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 21.69 27.73 -169.99 -4.71 16.97 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.99 16 7 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.37 5.35 -59.91 -0.32 -17.69 16 10 C 0.17 3.10 5.71 -4.04 -0.02 3.08 16 11 C -0.11 -1.59 3.05 -88.47 -0.27 -1.86 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -1.52 6.37 -24.90 -0.16 -1.68 16 14 C 0.10 0.99 6.49 -3.06 -0.02 0.97 16 15 N -0.62 -7.55 3.33 -170.51 -0.57 -8.12 16 16 C 0.53 6.63 7.61 -10.98 -0.08 6.54 16 17 O -0.54 -8.66 14.93 5.56 0.08 -8.58 16 18 C -0.13 -1.13 4.31 -27.88 -0.12 -1.25 16 19 C -0.05 -0.50 2.54 -90.72 -0.23 -0.73 16 20 H 0.09 0.95 8.01 -51.93 -0.42 0.53 16 21 C -0.14 -1.43 9.19 -35.70 -0.33 -1.76 16 22 C -0.18 -1.61 10.78 -35.70 -0.38 -1.99 16 23 C -0.10 -0.71 6.81 -26.83 -0.18 -0.89 16 24 C -0.12 -0.85 6.71 -25.02 -0.17 -1.02 16 25 C 0.11 1.52 6.38 -2.53 -0.02 1.51 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.36 8.02 5.53 -40.82 -0.23 7.80 16 28 H 0.03 0.58 7.97 -51.93 -0.41 0.16 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.13 1.49 7.31 -52.49 -0.38 1.11 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -32.77 344.53 -9.13 -41.90 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.34 Total: 4.80 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.24 Total: -6.07 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.11 Total: -54.22 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.77 -9.13 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.660 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds