Wall clock time and date at job start Tue Mar 31 2020 00:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48491 * 109.47404 * 270.00286 * 3 2 1 5 5 H 1.48501 * 109.46822 * 30.00635 * 3 2 1 6 6 H 1.48502 * 109.47019 * 150.00159 * 3 2 1 7 7 C 1.38812 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99882 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99898 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46731 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.88876 * 51.11905 * 11 10 9 13 13 C 1.55154 * 111.00729 * 287.19643 * 11 10 9 14 14 C 1.54327 * 102.94372 * 206.42528 * 13 11 10 15 15 N 1.47024 * 107.26851 * 22.19158 * 14 13 11 16 16 C 1.34780 * 125.64847 * 181.32598 * 15 14 13 17 17 O 1.21278 * 120.00386 * 179.69053 * 16 15 14 18 18 C 1.50707 * 119.99690 * 359.68630 * 16 15 14 19 19 C 1.53003 * 109.46952 * 179.97438 * 18 16 15 20 20 H 1.09000 * 110.34644 * 304.17399 * 19 18 16 21 21 C 1.51104 * 110.38240 * 66.45622 * 19 18 16 22 22 C 1.30530 * 111.10320 * 135.24671 * 21 19 18 23 23 C 1.51107 * 111.10236 * 359.97438 * 22 21 19 24 24 C 1.54628 * 110.38509 * 181.75644 * 19 18 16 25 25 C 1.47426 * 108.70449 * 1.05970 * 15 14 13 26 26 H 0.96999 * 120.00192 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47230 * 60.00539 * 10 9 7 29 29 H 1.09000 * 109.47013 * 299.99622 * 10 9 7 30 30 H 1.09005 * 110.72068 * 324.78745 * 13 11 10 31 31 H 1.08999 * 110.72351 * 88.06507 * 13 11 10 32 32 H 1.08997 * 109.88646 * 262.77582 * 14 13 11 33 33 H 1.09000 * 109.88486 * 141.60868 * 14 13 11 34 34 H 1.08997 * 109.47117 * 300.00376 * 18 16 15 35 35 H 1.09002 * 109.46743 * 60.00082 * 18 16 15 36 36 H 1.07994 * 124.45344 * 315.27267 * 21 19 18 37 37 H 1.07990 * 124.45222 * 180.02562 * 22 21 19 38 38 H 1.09005 * 110.38689 * 102.37280 * 23 22 21 39 39 H 1.08998 * 110.38894 * 224.63962 * 23 22 21 40 40 H 1.08997 * 111.04441 * 334.59575 * 24 19 18 41 41 H 1.09007 * 111.03714 * 98.52797 * 24 19 18 42 42 H 1.09004 * 110.36499 * 94.71384 * 25 15 14 43 43 H 1.09000 * 110.36586 * 217.02876 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0032 12 1 5.8822 -1.4920 0.7896 13 6 6.0838 -1.6679 -1.3870 14 6 7.5674 -2.0905 -1.4333 15 7 7.7338 -3.2034 -0.4870 16 6 8.8918 -3.8378 -0.2163 17 8 8.9130 -4.7433 0.5902 18 6 10.1601 -3.4221 -0.9161 19 6 11.3196 -4.2948 -0.4313 20 1 11.4073 -4.2400 0.6538 21 6 11.1205 -5.7265 -0.8716 22 6 12.2266 -6.2298 -1.3480 23 6 13.3476 -5.2174 -1.3055 24 6 12.6412 -3.8569 -1.1040 25 6 6.4257 -3.5061 0.1216 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0014 28 1 3.8485 -3.0418 -0.8925 29 1 3.8492 -3.0430 0.8875 30 1 5.5217 -2.1451 -2.1898 31 1 5.9901 -0.5832 -1.4410 32 1 8.2006 -1.2543 -1.1371 33 1 7.8285 -2.4176 -2.4397 34 1 10.0381 -3.5443 -1.9923 35 1 10.3735 -2.3772 -0.6910 36 1 10.1858 -6.2629 -0.8017 37 1 12.3273 -7.2371 -1.7240 38 1 14.0155 -5.4253 -0.4695 39 1 13.9017 -5.2247 -2.2441 40 1 12.4510 -3.3697 -2.0603 41 1 13.2197 -3.2092 -0.4451 42 1 5.9304 -4.3097 -0.4236 43 1 6.5488 -3.7778 1.1700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265955043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:31 Heat of formation + Delta-G solvation = -31.571095 kcal Electronic energy + Delta-G solvation = -21285.019743 eV Core-core repulsion = 18136.439560 eV Total energy + Delta-G solvation = -3148.580183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28923 -39.68957 -38.51159 -36.57128 -34.06847 -32.82611 -31.84878 -30.35251 -29.77400 -27.71385 -26.00409 -24.00277 -23.76671 -21.57264 -21.35766 -20.36640 -19.65464 -19.44922 -18.01688 -17.41493 -16.97547 -16.59138 -16.47214 -15.79467 -15.58266 -15.26198 -14.90562 -14.84664 -14.23135 -14.14336 -13.87232 -13.50189 -13.27867 -13.03787 -12.88020 -12.81221 -12.73852 -12.66299 -12.21203 -12.12992 -12.04403 -11.95820 -11.81305 -11.74126 -11.70802 -11.59945 -10.96870 -10.81752 -9.79021 -9.65596 -9.30563 -8.02250 -5.36825 1.38870 1.38951 1.43969 1.51263 1.64588 1.98728 2.49802 3.28147 3.30795 3.56796 3.63333 3.73605 3.79466 3.96360 3.98342 4.12492 4.29879 4.35547 4.39185 4.49560 4.51448 4.57742 4.62965 4.67767 4.75090 4.81109 4.82339 4.98101 4.99454 5.01510 5.07616 5.11060 5.19850 5.25460 5.31121 5.38770 5.43278 5.69629 5.75459 5.99415 6.21072 6.54735 7.08027 7.16393 7.82565 8.03786 9.19311 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047368 B = 0.002879 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.977791 B = 9722.958089 C =10072.457856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.249 1.249 7 C -0.238 4.238 8 H 0.053 0.947 9 N -0.754 5.754 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.084 0.916 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.621 5.621 16 C 0.519 3.481 17 O -0.585 6.585 18 C -0.118 4.118 19 C -0.055 4.055 20 H 0.068 0.932 21 C -0.168 4.168 22 C -0.175 4.175 23 C -0.101 4.101 24 C -0.114 4.114 25 C 0.117 3.883 26 H 0.258 0.742 27 H 0.368 0.632 28 H 0.031 0.969 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.085 -4.791 -6.298 31.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.369 4.369 8 H 0.071 0.929 9 N -0.400 5.400 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.019 4.019 15 N -0.354 5.354 16 C 0.310 3.690 17 O -0.466 6.466 18 C -0.157 4.157 19 C -0.074 4.074 20 H 0.086 0.914 21 C -0.186 4.186 22 C -0.193 4.193 23 C -0.138 4.138 24 C -0.152 4.152 25 C -0.007 4.007 26 H 0.067 0.933 27 H 0.202 0.798 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 29.993 -5.409 -5.874 31.037 hybrid contribution -0.808 0.526 0.408 1.047 sum 29.184 -4.883 -5.466 30.091 Atomic orbital electron populations 1.69901 1.07337 1.26813 1.59548 1.25596 0.96191 1.01625 1.02427 0.85332 0.78625 0.78971 0.78392 1.19763 1.22562 1.17299 1.19018 0.82778 0.93445 1.41628 0.92918 1.42596 1.02340 1.04033 1.90997 1.20627 0.89422 0.87582 0.98340 1.22402 0.93548 0.96753 0.99296 0.89763 1.22706 0.94659 1.02557 0.96209 1.22261 0.97100 0.88943 0.93547 1.48700 1.07599 1.35894 1.43254 1.21123 0.84845 0.81055 0.81945 1.90683 1.86445 1.32021 1.37412 1.21746 0.89715 1.02444 1.01833 1.20831 0.94477 0.92101 0.99966 0.91383 1.23275 0.98329 0.97296 0.99726 1.23529 0.95344 1.00170 1.00220 1.21402 0.96698 0.92890 1.02766 1.22564 0.93874 0.97141 1.01593 1.22029 0.83175 0.96918 0.98556 0.93307 0.79793 0.95146 0.96229 0.90407 0.89144 0.88969 0.88971 0.86945 0.86273 0.88322 0.85437 0.90467 0.89716 0.89305 0.89538 0.91433 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.18 13.97 21.65 0.30 -62.88 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.96 44.21 27.73 68.60 1.90 46.11 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 7 C -0.24 -13.52 10.47 84.03 0.88 -12.64 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 9 N -0.75 -34.14 5.35 -343.45 -1.84 -35.98 16 10 C 0.17 6.11 5.71 86.38 0.49 6.61 16 11 C -0.10 -2.73 3.05 -9.40 -0.03 -2.76 16 12 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.12 -2.65 6.37 31.78 0.20 -2.45 16 14 C 0.10 1.65 6.49 86.73 0.56 2.21 16 15 N -0.62 -13.92 3.33 -811.77 -2.70 -16.62 16 16 C 0.52 12.43 7.61 87.66 0.67 13.09 16 17 O -0.59 -19.09 14.93 -3.02 -0.05 -19.14 16 18 C -0.12 -1.75 4.31 29.85 0.13 -1.62 16 19 C -0.06 -0.93 2.54 -10.86 -0.03 -0.95 16 20 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 21 C -0.17 -3.40 9.19 26.26 0.24 -3.16 16 22 C -0.17 -2.81 10.78 26.26 0.28 -2.53 16 23 C -0.10 -1.16 6.81 30.53 0.21 -0.95 16 24 C -0.11 -1.21 6.71 31.70 0.21 -1.00 16 25 C 0.12 3.08 6.38 86.85 0.55 3.64 16 26 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.37 15.51 5.53 -92.71 -0.51 14.99 16 28 H 0.03 1.13 7.97 -2.39 -0.02 1.11 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.76 7.91 -2.38 -0.02 1.75 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 2.48 7.31 -2.91 -0.02 2.46 16 37 H 0.13 1.78 8.06 -2.92 -0.02 1.76 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.69 7.91 -2.39 -0.02 0.67 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 1.81 8.04 -2.38 -0.02 1.79 16 43 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -73.81 344.53 2.87 -70.95 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.40 Total: 23.54 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.84 Total: -5.98 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.24 Total: -115.48 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Total: -73.81 2.87 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265955043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.375 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds