Wall clock time and date at job start Tue Mar 31 2020 00:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00003 * 336.84115 * 7 2 1 9 9 N 1.36938 * 119.99758 * 156.84153 * 7 2 1 10 10 C 1.46499 * 119.99840 * 320.87508 * 9 7 2 11 11 C 1.52996 * 109.47284 * 270.00238 * 10 9 7 12 12 C 1.53004 * 109.47158 * 180.02562 * 11 10 9 13 13 N 1.46490 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00316 * 179.97438 * 13 12 11 15 15 O 1.21614 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.47101 * 120.00448 * 179.97438 * 14 13 12 17 17 C 1.32993 * 120.00309 * 179.97438 * 16 14 13 18 18 C 1.51402 * 136.31736 * 359.64393 * 17 16 14 19 19 C 1.53371 * 87.52168 * 206.04695 * 18 17 16 20 20 C 1.51406 * 136.31880 * 179.97438 * 17 16 14 21 21 C 1.46499 * 119.99668 * 140.87600 * 9 7 2 22 22 C 1.52991 * 117.50075 * 4.00808 * 21 9 7 23 23 C 1.52993 * 117.50067 * 295.38288 * 21 9 7 24 24 H 0.97007 * 119.99580 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47109 * 30.00922 * 10 9 7 26 26 H 1.09000 * 109.46963 * 149.99846 * 10 9 7 27 27 H 1.08996 * 109.47035 * 300.00044 * 11 10 9 28 28 H 1.08991 * 109.47405 * 60.00127 * 11 10 9 29 29 H 1.08996 * 109.46898 * 299.99778 * 12 11 10 30 30 H 1.09000 * 109.47312 * 59.99471 * 12 11 10 31 31 H 0.97000 * 120.00044 * 0.02562 * 13 12 11 32 32 H 1.08003 * 120.00076 * 0.02562 * 16 14 13 33 33 H 1.09002 * 113.55784 * 320.63368 * 18 17 16 34 34 H 1.09003 * 113.56741 * 91.36038 * 18 17 16 35 35 H 1.08996 * 113.97203 * 220.28974 * 19 18 17 36 36 H 1.09004 * 113.59782 * 88.78820 * 19 18 17 37 37 H 1.08997 * 113.56531 * 268.64236 * 20 17 16 38 38 H 1.09002 * 113.55478 * 39.37773 * 20 17 16 39 39 H 1.09003 * 115.54322 * 149.71498 * 21 9 7 40 40 H 1.09002 * 117.50191 * 359.97438 * 22 21 9 41 41 H 1.09005 * 117.50085 * 145.01704 * 22 21 9 42 42 H 1.08999 * 117.49801 * 214.98303 * 23 21 9 43 43 H 1.08996 * 117.50002 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5355 -2.0996 0.3688 9 7 3.2969 -1.2502 -0.4658 10 6 3.6781 -0.4693 -1.6453 11 6 3.4613 -1.3096 -2.9053 12 6 3.8600 -0.4942 -4.1370 13 7 3.6531 -1.2991 -5.3434 14 6 3.9383 -0.7827 -6.5552 15 8 4.3679 0.3513 -6.6471 16 6 3.7311 -1.5911 -7.7665 17 6 4.0120 -1.0813 -8.9623 18 6 4.5349 0.2356 -9.4958 19 6 3.8050 -0.0819 -10.8068 20 6 3.9461 -1.5568 -10.3983 21 6 4.2921 -2.0825 0.2147 22 6 3.8112 -2.9462 1.3824 23 6 4.6659 -1.7057 1.6496 24 1 -0.4850 0.8401 -0.0004 25 1 3.0653 0.4306 -1.6988 26 1 4.7289 -0.1893 -1.5715 27 1 4.0741 -2.2094 -2.8517 28 1 2.4106 -1.5896 -2.9790 29 1 3.2475 0.4057 -4.1907 30 1 4.9110 -0.2146 -4.0630 31 1 3.3101 -2.2034 -5.2701 32 1 3.3499 -2.5983 -7.6850 33 1 4.1348 1.1060 -8.9758 34 1 5.6199 0.2648 -9.5972 35 1 4.3675 0.1827 -11.7021 36 1 2.7743 0.2724 -10.8292 37 1 4.8695 -2.0190 -10.7471 38 1 3.0629 -2.1563 -10.6185 39 1 5.0795 -2.4878 -0.4208 40 1 2.7544 -2.8949 1.6446 41 1 4.2822 -3.9202 1.5154 42 1 5.6993 -1.8635 1.9583 43 1 4.1718 -0.8383 2.0872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266131918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:41 Heat of formation + Delta-G solvation = 48.698028 kcal Electronic energy + Delta-G solvation = -21063.973993 eV Core-core repulsion = 17918.874540 eV Total energy + Delta-G solvation = -3145.099453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79602 -38.43741 -37.36977 -35.31327 -33.60547 -31.95904 -31.07495 -29.56226 -26.01210 -25.51924 -23.99356 -23.01689 -21.65937 -21.18699 -20.63777 -19.62369 -18.31897 -16.93235 -16.53124 -15.89437 -15.77627 -15.62299 -15.28578 -14.97782 -14.49460 -13.88395 -13.80374 -13.58399 -12.71795 -12.70152 -12.45224 -12.22887 -12.14354 -12.06728 -11.92899 -11.24732 -11.14121 -11.04874 -10.85115 -10.72677 -10.63025 -10.36288 -9.99186 -9.75450 -9.62214 -9.46665 -9.41785 -9.37869 -8.81107 -8.51563 -6.74669 -6.06425 -3.49006 1.27762 3.28262 3.31058 3.38052 3.45391 3.51752 4.20032 4.28020 4.47733 4.51684 4.73368 4.85219 4.86440 5.05096 5.24052 5.27272 5.36434 5.44210 5.50580 5.55436 5.55644 5.77549 5.80065 5.83440 5.96083 5.98153 6.03177 6.06452 6.10256 6.22945 6.35035 6.41469 6.45560 6.49090 6.66021 6.75618 6.89921 6.93217 7.10460 7.69352 8.01023 8.35817 8.38286 8.94453 9.65192 10.05960 11.08288 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.003313 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.564357 B = 8448.673962 C = 8987.768032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.042 3.958 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.272 4.272 8 H 0.082 0.918 9 N -0.573 5.573 10 C 0.142 3.858 11 C -0.145 4.145 12 C 0.119 3.881 13 N -0.722 5.722 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.195 4.195 17 C -0.067 4.067 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.108 4.108 21 C 0.120 3.880 22 C -0.189 4.189 23 C -0.225 4.225 24 H 0.264 0.736 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.401 0.599 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 -4.773 -16.766 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.160 4.160 3 Si 0.700 3.300 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.400 4.400 8 H 0.099 0.901 9 N -0.291 5.291 10 C 0.016 3.984 11 C -0.185 4.185 12 C -0.005 4.005 13 N -0.372 5.372 14 C 0.333 3.667 15 O -0.427 6.427 16 C -0.216 4.216 17 C -0.069 4.069 18 C -0.143 4.143 19 C -0.180 4.180 20 C -0.145 4.145 21 C 0.011 3.989 22 C -0.227 4.227 23 C -0.266 4.266 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.083 -3.842 -16.797 19.478 hybrid contribution 0.098 0.433 0.278 0.524 sum 9.181 -3.409 -16.519 19.204 Atomic orbital electron populations 1.69874 1.06034 1.26910 1.50632 1.25506 0.95048 0.97776 0.97660 0.87064 0.80808 0.84665 0.77435 1.20952 1.22800 1.19112 1.18700 0.86321 0.94467 1.40532 0.90058 1.43674 1.07034 1.52081 1.26360 1.21085 0.97899 0.94103 0.85304 1.22370 1.02888 0.99304 0.93940 1.21442 1.01036 0.94781 0.83253 1.45993 1.66642 1.18429 1.06138 1.18440 0.77953 0.86631 0.83647 1.90761 1.45859 1.19012 1.87097 1.21653 1.08623 1.00459 0.90880 1.23433 0.92454 0.97505 0.93523 1.22207 1.00626 0.96489 0.94941 1.22735 1.01491 0.95882 0.97925 1.22346 1.02918 0.97571 0.91662 1.21166 0.93958 0.97215 0.86528 1.23057 1.01085 0.93431 1.05125 1.23372 0.98333 0.99582 1.05266 0.92577 0.92235 0.93877 0.92158 0.90480 0.91637 0.91914 0.76511 0.85021 0.89497 0.88548 0.90479 0.89729 0.88226 0.90433 0.89118 0.87928 0.90521 0.90849 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.97 55.49 0.78 -25.90 16 2 C 0.04 1.17 5.28 -17.43 -0.09 1.08 16 3 Si 0.87 21.95 25.32 -169.99 -4.30 17.65 16 4 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.27 -7.29 8.93 -15.06 -0.13 -7.43 16 8 H 0.08 2.36 6.86 -52.49 -0.36 2.00 16 9 N -0.57 -13.13 2.38 -165.67 -0.39 -13.52 16 10 C 0.14 2.94 4.56 -4.04 -0.02 2.93 16 11 C -0.14 -2.51 5.65 -26.73 -0.15 -2.66 16 12 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 13 N -0.72 -10.05 5.55 -61.50 -0.34 -10.39 16 14 C 0.54 8.11 7.76 -12.67 -0.10 8.01 16 15 O -0.55 -10.05 15.15 5.27 0.08 -9.97 16 16 C -0.20 -2.22 10.03 -37.81 -0.38 -2.60 16 17 C -0.07 -0.71 6.93 -100.48 -0.70 -1.41 16 18 C -0.11 -1.09 6.99 -27.57 -0.19 -1.28 16 19 C -0.14 -1.08 8.17 -26.19 -0.21 -1.30 16 20 C -0.11 -0.79 7.96 -27.40 -0.22 -1.01 16 21 C 0.12 2.37 6.57 -67.94 -0.45 1.93 16 22 C -0.19 -3.56 9.80 -26.74 -0.26 -3.83 16 23 C -0.22 -4.29 10.35 -26.74 -0.28 -4.56 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 25 H 0.06 1.38 3.45 -51.93 -0.18 1.20 16 26 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.51 8.46 -40.82 -0.35 4.16 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.09 1.08 7.49 -51.93 -0.39 0.70 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.10 2.19 6.44 -51.93 -0.33 1.85 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -31.66 350.72 -9.21 -40.88 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.11 Total: 6.22 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -3.20 Total: -10.25 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.04 Total: -49.81 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.30 Total: 17.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.66 -9.21 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266131918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.575 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds