Wall clock time and date at job start Tue Mar 31 2020 00:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00003 * 336.84115 * 7 2 1 9 9 N 1.36938 * 119.99758 * 156.84153 * 7 2 1 10 10 C 1.46499 * 119.99840 * 320.87508 * 9 7 2 11 11 C 1.52996 * 109.47284 * 270.00238 * 10 9 7 12 12 C 1.53004 * 109.47158 * 180.02562 * 11 10 9 13 13 N 1.46490 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00316 * 179.97438 * 13 12 11 15 15 O 1.21614 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.47101 * 120.00448 * 179.97438 * 14 13 12 17 17 C 1.32993 * 120.00309 * 179.97438 * 16 14 13 18 18 C 1.51402 * 136.31736 * 359.64393 * 17 16 14 19 19 C 1.53371 * 87.52168 * 206.04695 * 18 17 16 20 20 C 1.51406 * 136.31880 * 179.97438 * 17 16 14 21 21 C 1.46499 * 119.99668 * 140.87600 * 9 7 2 22 22 C 1.52991 * 117.50075 * 4.00808 * 21 9 7 23 23 C 1.52993 * 117.50067 * 295.38288 * 21 9 7 24 24 H 0.97007 * 119.99580 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47109 * 30.00922 * 10 9 7 26 26 H 1.09000 * 109.46963 * 149.99846 * 10 9 7 27 27 H 1.08996 * 109.47035 * 300.00044 * 11 10 9 28 28 H 1.08991 * 109.47405 * 60.00127 * 11 10 9 29 29 H 1.08996 * 109.46898 * 299.99778 * 12 11 10 30 30 H 1.09000 * 109.47312 * 59.99471 * 12 11 10 31 31 H 0.97000 * 120.00044 * 0.02562 * 13 12 11 32 32 H 1.08003 * 120.00076 * 0.02562 * 16 14 13 33 33 H 1.09002 * 113.55784 * 320.63368 * 18 17 16 34 34 H 1.09003 * 113.56741 * 91.36038 * 18 17 16 35 35 H 1.08996 * 113.97203 * 220.28974 * 19 18 17 36 36 H 1.09004 * 113.59782 * 88.78820 * 19 18 17 37 37 H 1.08997 * 113.56531 * 268.64236 * 20 17 16 38 38 H 1.09002 * 113.55478 * 39.37773 * 20 17 16 39 39 H 1.09003 * 115.54322 * 149.71498 * 21 9 7 40 40 H 1.09002 * 117.50191 * 359.97438 * 22 21 9 41 41 H 1.09005 * 117.50085 * 145.01704 * 22 21 9 42 42 H 1.08999 * 117.49801 * 214.98303 * 23 21 9 43 43 H 1.08996 * 117.50002 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5355 -2.0996 0.3688 9 7 3.2969 -1.2502 -0.4658 10 6 3.6781 -0.4693 -1.6453 11 6 3.4613 -1.3096 -2.9053 12 6 3.8600 -0.4942 -4.1370 13 7 3.6531 -1.2991 -5.3434 14 6 3.9383 -0.7827 -6.5552 15 8 4.3679 0.3513 -6.6471 16 6 3.7311 -1.5911 -7.7665 17 6 4.0120 -1.0813 -8.9623 18 6 4.5349 0.2356 -9.4958 19 6 3.8050 -0.0819 -10.8068 20 6 3.9461 -1.5568 -10.3983 21 6 4.2921 -2.0825 0.2147 22 6 3.8112 -2.9462 1.3824 23 6 4.6659 -1.7057 1.6496 24 1 -0.4850 0.8401 -0.0004 25 1 3.0653 0.4306 -1.6988 26 1 4.7289 -0.1893 -1.5715 27 1 4.0741 -2.2094 -2.8517 28 1 2.4106 -1.5896 -2.9790 29 1 3.2475 0.4057 -4.1907 30 1 4.9110 -0.2146 -4.0630 31 1 3.3101 -2.2034 -5.2701 32 1 3.3499 -2.5983 -7.6850 33 1 4.1348 1.1060 -8.9758 34 1 5.6199 0.2648 -9.5972 35 1 4.3675 0.1827 -11.7021 36 1 2.7743 0.2724 -10.8292 37 1 4.8695 -2.0190 -10.7471 38 1 3.0629 -2.1563 -10.6185 39 1 5.0795 -2.4878 -0.4208 40 1 2.7544 -2.8949 1.6446 41 1 4.2822 -3.9202 1.5154 42 1 5.6993 -1.8635 1.9583 43 1 4.1718 -0.8383 2.0872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266131918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:40 Heat of formation + Delta-G solvation = 29.045516 kcal Electronic energy + Delta-G solvation = -21064.826190 eV Core-core repulsion = 17918.874540 eV Total energy + Delta-G solvation = -3145.951650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85811 -39.33539 -38.98721 -36.68513 -35.24516 -33.77942 -32.24392 -30.98138 -27.19297 -26.66695 -25.63549 -24.04018 -23.12618 -22.63594 -21.70924 -21.38108 -19.22159 -18.47072 -17.89710 -17.40412 -17.21370 -16.72547 -16.58465 -16.25739 -15.53442 -15.41663 -15.12621 -14.97183 -14.54499 -14.13872 -13.94813 -13.75939 -13.33548 -12.94562 -12.78030 -12.69798 -12.61850 -12.53472 -12.41185 -12.07254 -11.91476 -11.79297 -11.51806 -11.48318 -11.26247 -10.96841 -10.71871 -10.60263 -10.33071 -9.92962 -8.62472 -8.23826 -5.61131 0.37701 1.26557 1.37323 1.47433 2.20286 2.30884 2.37940 2.97388 3.19114 3.35329 3.42309 3.58775 3.82995 4.05452 4.10287 4.22866 4.26998 4.30007 4.36490 4.41624 4.50273 4.56636 4.61069 4.73084 4.74395 4.81892 4.86441 4.94223 4.95409 5.03576 5.03917 5.23028 5.25412 5.31596 5.35841 5.38044 5.47076 5.55018 5.66913 5.93855 6.20278 6.61717 6.99012 7.26881 7.62284 8.03517 8.95218 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.003313 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.564357 B = 8448.673962 C = 8987.768032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.012 4.012 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.310 1.310 6 H -0.260 1.260 7 C -0.248 4.248 8 H 0.049 0.951 9 N -0.587 5.587 10 C 0.135 3.865 11 C -0.125 4.125 12 C 0.129 3.871 13 N -0.714 5.714 14 C 0.538 3.462 15 O -0.591 6.591 16 C -0.211 4.211 17 C -0.072 4.072 18 C -0.121 4.121 19 C -0.135 4.135 20 C -0.093 4.093 21 C 0.106 3.894 22 C -0.185 4.185 23 C -0.218 4.218 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.415 0.585 32 H 0.163 0.837 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.467 -6.436 -18.607 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.209 4.209 3 Si 0.756 3.244 4 H -0.201 1.201 5 H -0.239 1.239 6 H -0.185 1.185 7 C -0.378 4.378 8 H 0.067 0.933 9 N -0.306 5.306 10 C 0.009 3.991 11 C -0.165 4.165 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.328 3.672 15 O -0.474 6.474 16 C -0.231 4.231 17 C -0.074 4.074 18 C -0.158 4.158 19 C -0.172 4.172 20 C -0.130 4.130 21 C -0.001 4.001 22 C -0.223 4.223 23 C -0.258 4.258 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.180 0.820 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.611 -5.546 -18.643 22.652 hybrid contribution -0.624 0.891 0.845 1.377 sum 10.987 -4.655 -17.798 21.428 Atomic orbital electron populations 1.69982 1.07493 1.27278 1.53879 1.26012 0.95489 1.00577 0.98784 0.86147 0.79516 0.81183 0.77558 1.20141 1.23906 1.18468 1.18551 0.87938 0.93012 1.38288 0.93294 1.43788 1.06398 1.52800 1.27629 1.21164 0.98661 0.93389 0.85837 1.22080 1.01857 0.99647 0.92884 1.21169 1.00748 0.93945 0.83754 1.45861 1.66414 1.18859 1.05365 1.19097 0.76963 0.86419 0.84684 1.90739 1.47976 1.21010 1.87701 1.21696 1.10445 1.01483 0.89470 1.23951 0.90604 0.97788 0.95009 1.22348 1.01283 0.95445 0.96681 1.22727 1.01220 0.96101 0.97122 1.22390 1.04645 0.97489 0.88443 1.21545 0.94218 0.97098 0.87278 1.23041 0.99513 0.95294 1.04497 1.23356 0.99970 0.98365 1.04155 0.92904 0.94972 0.91339 0.89653 0.92846 0.94181 0.91315 0.74810 0.81988 0.92650 0.87933 0.88387 0.89958 0.86096 0.88800 0.85331 0.91406 0.86788 0.87138 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.97 21.65 0.30 -58.21 16 2 C -0.01 -0.67 5.28 84.86 0.45 -0.22 16 3 Si 0.93 46.58 25.32 68.60 1.74 48.31 16 4 H -0.27 -13.29 6.52 99.48 0.65 -12.64 16 5 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 6 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -13.59 8.93 84.03 0.75 -12.84 16 8 H 0.05 2.97 6.86 -2.91 -0.02 2.95 16 9 N -0.59 -26.32 2.38 -678.07 -1.61 -27.93 16 10 C 0.13 5.40 4.56 86.38 0.39 5.80 16 11 C -0.12 -4.16 5.65 30.59 0.17 -3.99 16 12 C 0.13 4.06 5.67 86.38 0.49 4.55 16 13 N -0.71 -19.14 5.55 -466.73 -2.59 -21.73 16 14 C 0.54 15.74 7.76 86.57 0.67 16.41 16 15 O -0.59 -22.09 15.15 -4.07 -0.06 -22.16 16 16 C -0.21 -4.44 10.03 23.43 0.23 -4.21 16 17 C -0.07 -1.38 6.93 -17.17 -0.12 -1.50 16 18 C -0.12 -2.40 6.99 30.05 0.21 -2.19 16 19 C -0.13 -1.72 8.17 30.95 0.25 -1.47 16 20 C -0.09 -1.05 7.96 30.16 0.24 -0.81 16 21 C 0.11 3.90 6.57 44.99 0.30 4.19 16 22 C -0.19 -6.63 9.80 30.59 0.30 -6.33 16 23 C -0.22 -7.77 10.35 30.59 0.32 -7.45 16 24 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 25 H 0.03 1.48 3.45 -2.39 -0.01 1.47 16 26 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.42 8.61 8.46 -92.71 -0.78 7.83 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.05 1.45 7.49 -2.39 -0.02 1.43 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.07 2.92 6.44 -2.39 -0.02 2.91 16 41 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 42 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -72.21 350.72 2.58 -69.63 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.15 Total: 22.14 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.66 Total: -10.06 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -3.90 Total: -107.87 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.16 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.74 Total: 48.31 kcal Total: -72.21 2.58 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266131918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.675 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds