Wall clock time and date at job start Tue Mar 31 2020 00:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47418 * 34.99981 * 10 9 7 12 12 C 1.52998 * 109.47369 * 154.99908 * 10 9 7 13 13 N 1.46497 * 109.46986 * 305.00002 * 12 10 9 14 14 C 1.34778 * 119.99702 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99841 * 179.97438 * 14 13 12 17 17 C 1.53002 * 119.29944 * 250.51668 * 16 14 13 18 18 C 1.52991 * 60.38097 * 248.69482 * 17 16 14 19 19 H 1.08995 * 119.30319 * 111.30511 * 18 17 16 20 20 C 1.54268 * 118.68680 * 266.65053 * 18 17 16 21 21 C 1.54896 * 104.19488 * 87.82082 * 20 18 17 22 22 C 1.54264 * 117.41537 * 46.17201 * 16 14 13 23 23 C 1.53003 * 109.47081 * 274.99888 * 10 9 7 24 24 C 1.53000 * 117.49928 * 128.61699 * 23 10 9 25 25 C 1.52998 * 60.00062 * 252.51473 * 24 23 10 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47200 * 65.00158 * 12 10 9 29 29 H 1.09006 * 109.47346 * 184.99611 * 12 10 9 30 30 H 0.97000 * 120.00441 * 359.97438 * 13 12 10 31 31 H 1.08999 * 117.46042 * 356.29304 * 17 16 14 32 32 H 1.09000 * 117.46042 * 141.09432 * 17 16 14 33 33 H 1.09001 * 110.48572 * 206.49689 * 20 18 17 34 34 H 1.08996 * 110.48832 * 329.01397 * 20 18 17 35 35 H 1.09006 * 110.75438 * 80.37324 * 21 20 18 36 36 H 1.08995 * 110.75812 * 203.55641 * 21 20 18 37 37 H 1.08997 * 110.49315 * 235.05048 * 22 16 14 38 38 H 1.09002 * 110.48506 * 357.69148 * 22 16 14 39 39 H 1.08996 * 115.55021 * 274.33448 * 23 10 9 40 40 H 1.09004 * 117.49921 * 0.02562 * 24 23 10 41 41 H 1.09004 * 117.49638 * 145.01903 * 24 23 10 42 42 H 1.09006 * 117.49591 * 252.50723 * 25 24 23 43 43 H 1.09000 * 117.49770 * 107.49748 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9709 -3.5494 0.5904 12 6 1.1831 -4.7508 0.6201 13 7 0.7416 -4.3311 1.9525 14 6 -0.0446 -5.1418 2.6882 15 8 -0.3869 -6.2184 2.2471 16 6 -0.4982 -4.7104 4.0591 17 6 0.0756 -5.4107 5.2925 18 6 -1.3959 -5.6114 4.9252 19 1 -1.7292 -6.5870 4.5716 20 6 -2.4524 -4.6910 5.5705 21 6 -2.5202 -3.4676 4.6228 22 6 -1.0404 -3.2739 4.2084 23 6 2.4162 -4.0388 -1.4329 24 6 3.8759 -4.3902 -1.7276 25 6 3.2924 -3.0661 -2.2248 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0092 28 1 0.3130 -4.9201 -0.0143 29 1 1.7583 -5.6731 0.7016 30 1 1.0157 -3.4702 2.3055 31 1 0.7540 -6.2473 5.1254 32 1 0.2967 -4.7937 6.1634 33 1 -3.4191 -5.1927 5.6155 34 1 -2.1350 -4.3863 6.5677 35 1 -3.1395 -3.6867 3.7529 36 1 -2.8946 -2.5905 5.1505 37 1 -0.4939 -2.7385 4.9847 38 1 -0.9766 -2.7415 3.2594 39 1 1.6468 -4.5831 -1.9804 40 1 4.5809 -4.3496 -0.8972 41 1 4.0669 -5.1661 -2.4690 42 1 3.0996 -2.9708 -3.2934 43 1 3.6136 -2.1541 -1.7217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266421620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:27 Heat of formation + Delta-G solvation = 15.406471 kcal Electronic energy + Delta-G solvation = -22117.938591 eV Core-core repulsion = 18971.395508 eV Total energy + Delta-G solvation = -3146.543083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -40.31610 -38.21905 -37.28538 -34.62019 -33.37006 -31.62364 -30.98180 -28.81976 -27.59991 -24.18970 -23.16150 -22.38594 -21.71972 -21.34760 -20.23659 -19.81490 -18.77082 -17.39431 -16.81641 -15.68359 -15.26710 -15.01189 -14.74742 -14.63190 -14.08841 -13.77304 -13.34272 -13.20586 -13.12776 -12.99878 -12.83495 -12.08957 -11.66962 -11.38831 -11.16793 -11.08019 -11.06004 -10.90013 -10.89368 -10.87237 -10.71694 -10.33823 -10.11268 -9.94879 -9.70413 -9.58468 -9.37064 -9.26179 -9.00179 -8.57827 -7.06327 -5.83605 -3.12920 2.83760 3.37364 3.43879 3.45965 3.52788 3.71953 4.40121 4.45356 4.57991 4.65965 4.83359 5.09623 5.22524 5.23129 5.38952 5.44016 5.46884 5.51314 5.57354 5.59520 5.66242 5.72194 5.76237 5.86941 5.88859 5.94467 6.03486 6.07082 6.12495 6.17292 6.22376 6.25553 6.38719 6.41660 6.54045 6.60367 6.77004 6.93938 6.98118 7.63747 8.00951 8.33152 8.64072 9.45586 9.99744 10.36146 11.38186 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.005505 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.530666 B = 5085.294382 C = 6587.485310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.706 5.706 14 C 0.553 3.447 15 O -0.557 6.557 16 C -0.173 4.173 17 C -0.124 4.124 18 C -0.132 4.132 19 H 0.116 0.884 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.254 0.746 27 H 0.385 0.615 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.411 0.589 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -8.652 8.559 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.357 5.357 14 C 0.339 3.661 15 O -0.436 6.436 16 C -0.176 4.176 17 C -0.161 4.161 18 C -0.150 4.150 19 H 0.134 0.866 20 C -0.133 4.133 21 C -0.159 4.159 22 C -0.126 4.126 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 H 0.064 0.936 27 H 0.219 0.781 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.061 -9.239 8.228 12.372 hybrid contribution 0.303 1.387 -0.221 1.437 sum 0.365 -7.852 8.007 11.221 Atomic orbital electron populations 1.69670 1.05016 1.25528 1.57359 1.24710 0.95435 0.97521 1.02902 0.86200 0.78827 0.84447 0.77189 1.20610 1.21945 1.21935 1.19198 0.90839 0.83827 1.42839 0.91113 1.42449 1.05815 0.99385 1.88048 1.20053 0.94359 0.86149 0.91187 0.92729 1.21593 0.98579 0.97457 0.82937 1.45893 1.50444 1.21902 1.17471 1.19288 0.77814 0.83914 0.85092 1.90646 1.57390 1.23082 1.72515 1.22380 1.07624 0.96542 0.91067 1.23057 0.95659 1.01478 0.95912 1.23321 0.90797 0.99692 1.01234 0.86599 1.21989 0.97705 0.95165 0.98416 1.22666 0.96575 0.97488 0.99182 1.21945 0.95176 0.92367 1.03084 1.23029 0.92199 1.03079 0.99793 1.22950 0.97238 0.99848 1.03372 1.22769 1.03376 0.94083 0.99052 0.93559 0.78057 0.91890 0.91789 0.75217 0.88153 0.88213 0.91160 0.91277 0.91141 0.91044 0.90795 0.89743 0.89159 0.89559 0.90103 0.90232 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.24 -5.93 8.62 -15.06 -0.13 -6.06 16 8 H 0.07 1.75 6.92 -52.49 -0.36 1.39 16 9 N -0.72 -16.19 4.54 -53.43 -0.24 -16.44 16 10 C 0.19 3.59 2.70 -67.93 -0.18 3.40 16 11 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 12 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 13 N -0.71 -12.10 5.22 -60.29 -0.31 -12.41 16 14 C 0.55 9.61 7.40 -10.98 -0.08 9.53 16 15 O -0.56 -11.31 16.79 5.55 0.09 -11.22 16 16 C -0.17 -2.44 2.67 -154.54 -0.41 -2.85 16 17 C -0.12 -1.43 9.89 -26.73 -0.26 -1.70 16 18 C -0.13 -1.63 6.53 -89.50 -0.58 -2.22 16 19 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 20 C -0.10 -1.00 6.64 -25.07 -0.17 -1.16 16 21 C -0.12 -1.44 6.91 -24.74 -0.17 -1.61 16 22 C -0.09 -1.18 6.21 -25.07 -0.16 -1.34 16 23 C -0.16 -2.78 5.36 -90.62 -0.49 -3.27 16 24 C -0.20 -2.99 10.18 -26.73 -0.27 -3.26 16 25 C -0.16 -2.75 9.78 -26.73 -0.26 -3.02 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.39 9.58 7.80 -40.82 -0.32 9.26 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.41 7.13 7.72 -40.82 -0.32 6.81 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.33 7.66 -51.93 -0.40 0.93 16 39 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 40 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -28.77 350.41 -9.94 -38.71 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -7.17 Total: 17.28 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.28 Total: -11.85 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.17 Total: -54.48 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.77 -9.94 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266421620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.112 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds