Wall clock time and date at job start Tue Mar 31 2020 00:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47418 * 34.99981 * 10 9 7 12 12 C 1.52998 * 109.47369 * 154.99908 * 10 9 7 13 13 N 1.46497 * 109.46986 * 305.00002 * 12 10 9 14 14 C 1.34778 * 119.99702 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99841 * 179.97438 * 14 13 12 17 17 C 1.53002 * 119.29944 * 250.51668 * 16 14 13 18 18 C 1.52991 * 60.38097 * 248.69482 * 17 16 14 19 19 H 1.08995 * 119.30319 * 111.30511 * 18 17 16 20 20 C 1.54268 * 118.68680 * 266.65053 * 18 17 16 21 21 C 1.54896 * 104.19488 * 87.82082 * 20 18 17 22 22 C 1.54264 * 117.41537 * 46.17201 * 16 14 13 23 23 C 1.53003 * 109.47081 * 274.99888 * 10 9 7 24 24 C 1.53000 * 117.49928 * 128.61699 * 23 10 9 25 25 C 1.52998 * 60.00062 * 252.51473 * 24 23 10 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47200 * 65.00158 * 12 10 9 29 29 H 1.09006 * 109.47346 * 184.99611 * 12 10 9 30 30 H 0.97000 * 120.00441 * 359.97438 * 13 12 10 31 31 H 1.08999 * 117.46042 * 356.29304 * 17 16 14 32 32 H 1.09000 * 117.46042 * 141.09432 * 17 16 14 33 33 H 1.09001 * 110.48572 * 206.49689 * 20 18 17 34 34 H 1.08996 * 110.48832 * 329.01397 * 20 18 17 35 35 H 1.09006 * 110.75438 * 80.37324 * 21 20 18 36 36 H 1.08995 * 110.75812 * 203.55641 * 21 20 18 37 37 H 1.08997 * 110.49315 * 235.05048 * 22 16 14 38 38 H 1.09002 * 110.48506 * 357.69148 * 22 16 14 39 39 H 1.08996 * 115.55021 * 274.33448 * 23 10 9 40 40 H 1.09004 * 117.49921 * 0.02562 * 24 23 10 41 41 H 1.09004 * 117.49638 * 145.01903 * 24 23 10 42 42 H 1.09006 * 117.49591 * 252.50723 * 25 24 23 43 43 H 1.09000 * 117.49770 * 107.49748 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9709 -3.5494 0.5904 12 6 1.1831 -4.7508 0.6201 13 7 0.7416 -4.3311 1.9525 14 6 -0.0446 -5.1418 2.6882 15 8 -0.3869 -6.2184 2.2471 16 6 -0.4982 -4.7104 4.0591 17 6 0.0756 -5.4107 5.2925 18 6 -1.3959 -5.6114 4.9252 19 1 -1.7292 -6.5870 4.5716 20 6 -2.4524 -4.6910 5.5705 21 6 -2.5202 -3.4676 4.6228 22 6 -1.0404 -3.2739 4.2084 23 6 2.4162 -4.0388 -1.4329 24 6 3.8759 -4.3902 -1.7276 25 6 3.2924 -3.0661 -2.2248 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0092 28 1 0.3130 -4.9201 -0.0143 29 1 1.7583 -5.6731 0.7016 30 1 1.0157 -3.4702 2.3055 31 1 0.7540 -6.2473 5.1254 32 1 0.2967 -4.7937 6.1634 33 1 -3.4191 -5.1927 5.6155 34 1 -2.1350 -4.3863 6.5677 35 1 -3.1395 -3.6867 3.7529 36 1 -2.8946 -2.5905 5.1505 37 1 -0.4939 -2.7385 4.9847 38 1 -0.9766 -2.7415 3.2594 39 1 1.6468 -4.5831 -1.9804 40 1 4.5809 -4.3496 -0.8972 41 1 4.0669 -5.1661 -2.4690 42 1 3.0996 -2.9708 -3.2934 43 1 3.6136 -2.1541 -1.7217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266421620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:26 Heat of formation + Delta-G solvation = -1.014760 kcal Electronic energy + Delta-G solvation = -22118.650669 eV Core-core repulsion = 18971.395508 eV Total energy + Delta-G solvation = -3147.255161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -41.50248 -39.55326 -38.68910 -36.10643 -35.15026 -32.75289 -32.57484 -30.22420 -28.90509 -25.82122 -24.68545 -23.53305 -23.03423 -22.63859 -21.35953 -21.12587 -20.12511 -19.15560 -18.10374 -17.09532 -16.86756 -16.28624 -16.20123 -15.92441 -15.61512 -15.22230 -14.89375 -14.67260 -14.34476 -14.08844 -13.89605 -13.67909 -12.99668 -12.94373 -12.75662 -12.68940 -12.40324 -12.26536 -12.03905 -11.99792 -11.95463 -11.88826 -11.72763 -11.34735 -11.02851 -10.99776 -10.80572 -10.64763 -10.61541 -10.02833 -8.99371 -7.87745 -5.15475 1.48707 1.51152 1.53108 1.58656 2.22939 2.58034 2.64584 3.07277 3.47375 3.49687 3.64593 3.76656 3.78877 3.95382 3.99718 4.16650 4.27377 4.33337 4.38224 4.42209 4.48724 4.56101 4.64549 4.65472 4.75218 4.81378 4.83497 4.89324 4.98572 5.02079 5.14916 5.15420 5.16151 5.21685 5.29232 5.39529 5.45917 5.46444 5.53072 5.62287 6.31406 6.59790 7.24325 7.39795 8.09840 8.36101 9.35063 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.005505 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.530666 B = 5085.294382 C = 6587.485310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.303 1.303 6 H -0.297 1.297 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.548 3.452 15 O -0.592 6.592 16 C -0.197 4.197 17 C -0.102 4.102 18 C -0.130 4.130 19 H 0.103 0.897 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.084 4.084 23 C -0.175 4.175 24 C -0.161 4.161 25 C -0.172 4.172 26 H 0.247 0.753 27 H 0.372 0.628 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.410 0.590 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -9.377 9.983 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.231 1.231 6 H -0.224 1.224 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.089 3.911 11 H 0.076 0.924 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.336 3.664 15 O -0.474 6.474 16 C -0.200 4.200 17 C -0.139 4.139 18 C -0.148 4.148 19 H 0.121 0.879 20 C -0.123 4.123 21 C -0.160 4.160 22 C -0.122 4.122 23 C -0.197 4.197 24 C -0.199 4.199 25 C -0.209 4.209 26 H 0.056 0.944 27 H 0.204 0.796 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.247 0.753 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.436 -9.990 9.652 13.966 hybrid contribution -0.064 1.508 -0.707 1.667 sum 1.372 -8.482 8.945 12.403 Atomic orbital electron populations 1.69816 1.06361 1.25462 1.59964 1.25349 0.96063 1.00326 1.04401 0.85278 0.78439 0.81055 0.76223 1.19165 1.23050 1.22427 1.19472 0.91099 0.84528 1.39770 0.90526 1.42544 1.05233 1.00340 1.88024 1.20130 0.94017 0.84709 0.92211 0.92423 1.21479 0.97847 0.97515 0.82902 1.45914 1.50442 1.21804 1.17327 1.19898 0.77006 0.83280 0.86230 1.90617 1.58634 1.24565 1.73593 1.22384 1.10142 0.97375 0.90099 1.23195 0.94907 1.00898 0.94896 1.23456 0.91897 0.99050 1.00444 0.87875 1.21988 0.97705 0.93832 0.98802 1.22677 0.95141 0.99056 0.99120 1.21904 0.96604 0.91752 1.01935 1.22919 0.94058 1.04045 0.98629 1.23023 0.95006 0.98376 1.03489 1.22724 1.04641 0.94325 0.99248 0.94419 0.79623 0.93468 0.90430 0.75323 0.88144 0.85450 0.90017 0.88873 0.93008 0.89345 0.89087 0.93075 0.88999 0.88555 0.87530 0.89568 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.26 13.06 21.65 0.28 -55.98 16 2 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.96 44.25 29.55 68.60 2.03 46.28 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.22 -10.92 8.62 84.03 0.72 -10.19 16 8 H 0.08 3.73 6.92 -2.91 -0.02 3.71 16 9 N -0.72 -33.07 4.54 -322.94 -1.47 -34.53 16 10 C 0.20 7.28 2.70 44.99 0.12 7.40 16 11 H 0.06 2.10 7.84 -2.38 -0.02 2.08 16 12 C 0.13 4.44 5.21 86.38 0.45 4.89 16 13 N -0.71 -24.51 5.22 -463.05 -2.42 -26.93 16 14 C 0.55 19.27 7.40 87.66 0.65 19.92 16 15 O -0.59 -24.47 16.79 -3.05 -0.05 -24.52 16 16 C -0.20 -5.42 2.67 -52.20 -0.14 -5.56 16 17 C -0.10 -2.12 9.89 30.59 0.30 -1.82 16 18 C -0.13 -3.01 6.53 -10.07 -0.07 -3.08 16 19 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 20 C -0.09 -1.59 6.64 31.67 0.21 -1.38 16 21 C -0.12 -2.77 6.91 31.89 0.22 -2.55 16 22 C -0.08 -2.22 6.21 31.67 0.20 -2.03 16 23 C -0.18 -5.92 5.36 -10.79 -0.06 -5.98 16 24 C -0.16 -4.45 10.18 30.59 0.31 -4.14 16 25 C -0.17 -5.87 9.78 30.59 0.30 -5.57 16 26 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.37 19.07 7.80 -92.71 -0.72 18.35 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.41 14.48 7.72 -92.71 -0.72 13.76 16 31 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.67 7.66 -2.39 -0.02 1.65 16 39 H 0.09 3.08 8.11 -2.39 -0.02 3.07 16 40 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 41 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.08 3.18 6.23 -2.39 -0.01 3.16 16 Total: -1.00 -62.75 350.41 1.63 -61.11 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -0.43 Total: 47.89 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 3.69 Total: -13.33 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.60 Total: -117.44 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.75 1.63 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266421620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.100 kcal (2) G-P(sol) polarization free energy of solvation -62.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds